 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CCDC121,CBX3,LSM5,MORN2,DYNC2LI1,MFF,STMP1,FAM167A,IMMP2L,C17orf75,KIAA0895,COA5,FAM104B,B4GAT1,MTURN,IFT22 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000225792 | ENST00000451264 | exon_skip_111863 | chr14:23565815-23565892 | -20.17 | -0.2841 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000225792 | ENSG00000122565 | CBX3 | CHOL,GBM,LAML,LGG,UCEC | GBM | | | ENSG00000225792 | ENSG00000128581 | IFT22 | CHOL,GBM,KICH,KIRP,PAAD | | KICH | | ENSG00000225792 | ENSG00000138036 | DYNC2LI1 | CHOL,KICH,KIRP,LAML,PAAD | | KICH | | ENSG00000225792 | ENSG00000154319 | FAM167A | CHOL,KICH,KIRC,KIRP,PAAD | | KICH,KIRC | | ENSG00000225792 | ENSG00000164542 | KIAA0895 | CHOL,KICH,KIRC,KIRP,OV,PAAD | | KICH | | ENSG00000225792 | ENSG00000180354 | MTURN | CHOL,KICH,KIRC,KIRP,PAAD | | KICH,KIRC | | ENSG00000225792 | ENSG00000188010 | MORN2 | CHOL,KICH,KIRP,LAML,PAAD | | KICH | | ENSG00000225792 | ENSG00000182518 | FAM104B | KICH,KIRC,LAML,PAAD,SARC | | KICH |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000225792.1 | ENST00000451368.1 | 79 | 385 | 624 | | ENSG00000225792.1 | ENST00000451264.1 | 70 | 78 | 290 |
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