 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | GART,CPLANE1,TOMM20,DNAJC27,WDFY1,ZRANB1,IFT52,LIG3,TWNK,TTC31,DCP1A,CCDC88A,NCAPD2,UBQLN4,TXNDC16,NSD3,UNKL,POLR3D,HLTF,RAB11FIP5,SENP1,GPATCH11,HSDL1,UBE4A,GDAP1,WDCP,GNAZ,METTL5,ZFP14,RHOT1,MMADHC,KAT6A,KLHL28,KDM5B,RSF1,SMARCC2,MYO9A,ALDH5A1,PELI3,USP30,KPNB1,PNO1,ATXN7L3,IBTK,SETD2,XXYLT1,UBA2,KLHL42,POGLUT2,CREB1,GPRASP2,CAPN7,HSPA13,XPO7,TMEM198,ZFP1,OGFOD1,GZF1,MYEF2,BRSK1,FAM219B,ARID4B,BLZF1,ASH1L,CNST,FBXO5,CASC3,SNPH,AP3M2,TUT4,FAN1,RIC8B,TOP2B,FANCE,MOCS3,TRIM37,AGBL5,C3orf18,PRC1,ATP9A,RFX7,MSH6,DYNC2H1,FBXO17,ADD2,SLC4A1AP,MBD5,CBX1,NCOA6,TTC21B,LMAN2L,GET1,PNMA8A,UTP23,GON4L,CERS6,ALKBH2,RACGAP1,CHIC1,CHD9,ZNF45,PIGN,C12orf73,NKAPD1,TMEM185B,ORC2,FGD1,POGLUT3,RASL10B,INTS2,UBE2O,CHST10,UBXN2A,TNKS,NR2C2,PNMA1,WASF1,FUT10,TASOR,R3HDM1,MOAP1,SCRN3,CHEK1,BRD2,SLC30A6,XPO1,PFKM,CDK17,IPO9,EIF3L,FITM2,DCLRE1A,ECD,SP3,DCUN1D5,B3GALNT1,TNPO2,SDE2,WDR35,DENR,ARHGEF11,TMEM14A,PAFAH1B1,LYSMD1,KAT14,ACACA,EIF2AK2,STXBP5,SELENOI,CUL3,PEG10,LTN1,RNF214,ARHGEF9,ZNF30,KBTBD6,AMMECR1L,SLC26A11,FLVCR1,USP27X,ILF3,CKAP2L,PRR3,CEP57,MIB1,CEP68,HOOK3,FAM168B,FEM1B,ARMCX4,AZI2,NDRG3,TRMT6,NDUFS1,RTL6,CLASP1,FAHD2B,ZNF70,ICE2,FAM171B,C20orf96,PGAP1,GRIK5,IMMT,ATL1,GID8,EXD2,FAM136A,GCFC2,ZNF25,UBR1,PHF12,KHK,LANCL1,UNG,SLC4A3,OSBPL8,AP2B1,SMG1,MPP2,OCRL,PHC1,FAM189B,ATP7A,MFSD9,DCTN1,GGNBP2,EP400,AGPAT1,TSN,RTF1,CABLES2,NEMF,REV3L,WDR47,SV2A,MTA3,RPRD1B,PRKD3,ZC3H8,TMEM182,SART3,AKT3,MAU2,ATE1,WDR82,RAB2B,MBLAC2,PGBD1,ZNF48,SGTB,SYNRG,NAP1L1,BHLHB9,DENND5B,CENPO,AURKA,DNAJC18,UCHL5,MTIF2,RPE,SLC39A10,NCKAP1,MIER3,HERC1,ZFR,ATRN,POMGNT2,ROCK2,KIF1A,POLR1A,C2orf68,WAC,MRE11,ARHGAP32,NDUFAF7,NOL4L,MANSC1,TTBK2,AKTIP,TP53BP1,CCDC82,ARID4A,FXR2,FAM171A2,VPS54,CCDC142,AASDHPPT,KIF18B,KIF3A,GGT7,SCAMP1,FAM168A,SYNGAP1,RBBP9,FAM104A,HECTD4,BBS7,EXOC7,DIXDC1,NADK2,PCGF6,SEPTIN8,XPO5,SMARCA1,DNAJC9,NUCKS1,GALC,PCYOX1,MACIR,FAM126B,ATAT1,PREPL,PLCG1,PRKAB2,PBX2,KLF12,PPP2R5D,ZBTB4,TMEM17,CDC42BPA,B3GALNT2,TGFBRAP1,RAB4A,SMARCAL1,VPS13B,NEK4,WDR12,MKS1,TTI1,SPIN3,HEATR1,WDR3,SUV39H2,GTF3C3,PPP1R12A,TET3,DHFR2,INCA1,UBXN7,KANSL3,USP11,DHX57,TCEAL1,AADAT,CNRIP1,PTCD3,ZNF91,CHD6,ZFP91,RAD1,CTPS2,BRWD1,OPHN1,DFFA,FAM83D,MLLT11,RO60,SEPTIN2,BBS10,ZFP30,MLH3,CADM1,SPRTN,SMARCC1,KANSL1L,POLI,AGFG1,PRIM1,CDK4,LNPEP,PGAP2,TRAM1L1,DLC1,SERTAD2,WDFY3,DCAF17,HEATR5B,E2F6,KIFAP3,ZC3H13,MAP4K5,HEATR6,UBR3,FBXL20,CIAO1,TUBGCP4,POLR2D,GMCL1,C10orf88,C2orf49,POLK,RAD51C,MTHFD2,WIZ,PLEKHA3,SLC9B2,SOGA1,CCDC121,RBL1,PYGO1,VEZT,PMS1,KIF7,METTL6,AAK1,TIA1,PRUNE1,MOSMO,BAG4,HCN3,KANSL1,FAM161B,ZMYM3,DNMT3A,CDK5R1,SYNJ1,BMPR2,SNRNP200,CDK2,DMWD,PARP1,ERCC3,CDS2,NAP1L3,FAM161A,FASTKD2,HELZ,DYM,SRRD,CRAMP1,WDR6,PNN,TMEM25,NIF3L1,METTL8,TMEM131,RETREG2,POLR3F,KMT2A,REV1,NCAM1,IP6K1,APPL1,SOS1,MED24,RUFY2,WBP1,TDRKH,RAD17,MED1,BUB1,TMEM237,SEC22C,CEBPZ,DSTYK,TMEM97,METAP2,USP34,MPHOSPH10,BOLA3,RBM39,TAF9B,GPATCH8,MDC1,STAG1,CKAP5,ZNF2,ESF1,PRTFDC1,NSRP1,LNPK,YWHAQ,REEP2,USP39,ATRX,GEMIN5,FOXRED2,RPRD1A,NOL10,TRIB2,TUB,TOR1AIP1,CSE1L,NKIRAS1,PRKRA,B4GAT1,CEP350,PIGM,RRP1B,KMT2E,CLASP2,CWC22,C2orf42,DCAF16,KIF3C,SUPT7L,MORC3,EXTL2,DLG4,ARL6,OSGEPL1,JPH4,SEMA4F,RBM4,TRIM3,OLA1,KAT6B,URI1,FBXW8,FAM217B,POGZ,RBMX,RBM4B,SYT11,KCTD9,ADNP,WDSUB1,TANC2,ORC4,TMEM241,C12orf43,PIP4K2B,NF1,ERC1,KLF11,TCF20,C2orf69,SPIN4,TIRAP,CPT1C,SCAPER,LRP6,NBAS,KIDINS220,FBH1,POLR3A,PUS7,BRF2,INTS13,MCM6,RAB39B,ZDHHC2,DHX33,DYRK1A,C8orf88,STRN,MARF1,GNPDA2,NEK1,MCM8,MCUR1,IFT46,SMC6,EXOC6B,COIL,FAM216A,HTRA2,SLC25A23,DLG1,ALS2,CRYZL1,LRP12,FBXO11,ATP6V1E2,SALL2,PATL1,SAP130,STMN3,RAB3D,CSNK2A1,NPTN,RMND5A,DIDO1,TEX10,KANK2,ALG9,C1orf109,CPSF3,AFF3,PSMC3IP,PIKFYVE,CHML,CARM1,CLIP3,PUM2,RAB3GAP1,CCT4,L1CAM,ZFP28,RAD18,FARP2,TRMT61B,C3orf33,RNF169,LDB1,CCP110,BICRAL,COPS8,PEX5,PTPRA,NUDT17,C17orf80,B4GALT6,CRIPT,JMJD1C,ASXL1,ARHGAP21,TMEM185A,NAE1,PDCD7,TTC33,CCDC112,PRPF4B,CFAP97,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CD74,DTX2,VAMP8,VAMP5,PUSL1,TYROBP,ZDHHC12,NCF4,AIF1,ARPC1B,STXBP2,GMFG,AKR1A1,LRRC25,AURKAIP1,BLOC1S1,SPI1,CYBA,LST1,CIB1,COPE,AGTRAP,CAPZB,PTPN6,MRPS15,PRR13,MVP,ATP6V0B,SLC8B1,LGALS9,SQOR,NPC2,MGST2,EVI2B,ABI3,HCST,TYMP | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000225439 | hsa-mir-7702 | ENST00000529783 | chr2:74148254-74148318 | 169.00 | -56.52 | 58 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000529783 | chr2:74148558-74148613 | 144.00 | -58.73 | 57 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000529783 | chr2:74148134-74148197 | 142.00 | -68.20 | 61 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000529783 | chr2:74148424-74148492 | 142.00 | -73.96 | 60 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74149495-74149558 | 177.00 | -66.82 | 60 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74148254-74148318 | 169.00 | -56.52 | 58 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74148436-74148501 | 163.00 | -64.61 | 60 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74148635-74148688 | 147.00 | -60.46 | 57 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74149192-74149254 | 146.00 | -65.28 | 62 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74148754-74148809 | 144.00 | -58.73 | 57 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74149079-74149135 | 143.00 | -68.79 | 50 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000423477 | chr2:74148134-74148197 | 142.00 | -68.20 | 61 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74149369-74149432 | 177.00 | -66.82 | 60 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74148310-74148375 | 163.00 | -64.61 | 60 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74148509-74148562 | 147.00 | -60.46 | 57 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74149066-74149128 | 146.00 | -65.28 | 62 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74148628-74148683 | 144.00 | -58.73 | 57 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74148953-74149009 | 143.00 | -68.79 | 50 | NA | | ENSG00000225439 | hsa-mir-7702 | ENST00000533563 | chr2:74148134-74148197 | 142.00 | -68.20 | 61 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000225439 | ENSG00000101298 | SNPH | ACC,GBM,PCPG,SARC,UCS | PCPG | | | ENSG00000225439 | ENSG00000103540 | CCP110 | ACC,KICH,PCPG,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000113441 | LNPEP | ACC,KICH,KIRP,PCPG,UCS | PCPG | | | ENSG00000225439 | ENSG00000130294 | KIF1A | ACC,LUAD,LUSC,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000131067 | GGT7 | ACC,GBM,KIRC,LUSC,PCPG,SARC,TGCT,THCA | PCPG | | | ENSG00000225439 | ENSG00000135622 | SEMA4F | ACC,BLCA,BRCA,GBM,KICH,KIRC,KIRP,LUSC,OV,PCPG,SARC,SKCM,TGCT,UCEC,UVM | PCPG | | | ENSG00000225439 | ENSG00000138078 | PREPL | ACC,GBM,KICH,KIRP,LAML,LGG,LUSC,PCPG,SARC,TGCT,THCA | PCPG | | | ENSG00000225439 | ENSG00000144369 | FAM171B | ACC,GBM,LGG,LUSC,MESO,PCPG,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000160767 | FAM189B | ACC,KICH,PCPG,TGCT,UCEC | PCPG | | | ENSG00000225439 | ENSG00000161800 | RACGAP1 | ACC,KIRP,LUAD,PCPG,UCEC,UCS | PCPG | | | ENSG00000225439 | ENSG00000162769 | FLVCR1 | ACC,LUSC,MESO,PCPG,SARC | PCPG | | | ENSG00000225439 | ENSG00000176749 | CDK5R1 | ACC,GBM,LGG,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000182985 | CADM1 | ACC,KIRP,PCPG,SARC,TGCT | PCPG | | | ENSG00000225439 | ENSG00000186364 | NUDT17 | ACC,BLCA,KICH,LUSC,PCPG,SARC,SKCM,TGCT,UVM | PCPG | | | ENSG00000225439 | ENSG00000197183 | NOL4L | ACC,KICH,LAML,PCPG,TGCT,UVM | PCPG | | | ENSG00000225439 | ENSG00000198901 | PRC1 | ACC,KIRP,LUAD,PCPG,UCS | PCPG | | | ENSG00000225439 | ENSG00000204843 | DCTN1 | ACC,BLCA,GBM,KICH,KIRC,LAML,LGG,PCPG,SARC,UCS | PCPG | | | ENSG00000225439 | ENSG00000084731 | KIF3C | BLCA,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PCPG,TGCT,THCA,UCEC | PCPG | | | ENSG00000225439 | ENSG00000101290 | CDS2 | BLCA,GBM,KICH,PCPG,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000108852 | MPP2 | BLCA,LUSC,PCPG,SARC,UCS | PCPG | | | ENSG00000225439 | ENSG00000158301 | GPRASP2 | BLCA,GBM,LGG,PCPG,SARC,TGCT,THCA,UCS,UVM | PCPG | | | ENSG00000225439 | ENSG00000164221 | CCDC112 | BLCA,KICH,KIRP,LUSC,MESO,PCPG,THCA | PCPG | | | ENSG00000225439 | ENSG00000176903 | PNMA1 | BLCA,KICH,LUAD,PCPG,UCEC | PCPG | | | ENSG00000225439 | ENSG00000198908 | BHLHB9 | BLCA,GBM,KIRP,LGG,LUSC,OV,PCPG,SARC,THCA,UCEC,UCS,UVM | PCPG | | | ENSG00000225439 | ENSG00000269190 | FBXO17 | BRCA,KICH,LUSC,MESO,OV,PCPG,SARC,TGCT,UCS,UVM | PCPG | | | ENSG00000225439 | ENSG00000054793 | ATP9A | GBM,PCPG,SARC,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000067369 | TP53BP1 | GBM,LGG,PCPG,SARC,TGCT,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000075340 | ADD2 | GBM,LAML,LGG,PCPG,UCS | PCPG | | | ENSG00000225439 | ENSG00000075945 | KIFAP3 | GBM,LAML,LGG,PCPG,TGCT,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000092051 | JPH4 | GBM,LGG,PCPG,SARC,TGCT | PCPG | | | ENSG00000225439 | ENSG00000102226 | USP11 | GBM,KIRP,LGG,LUSC,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000105270 | CLIP3 | GBM,KICH,PCPG,SARC,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000128881 | TTBK2 | GBM,KICH,LGG,PCPG,SARC,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000132670 | PTPRA | GBM,KIRP,LAML,PCPG,TGCT,THCA,UCEC | PCPG | | | ENSG00000225439 | ENSG00000132718 | SYT11 | GBM,LUAD,PCPG,TGCT,UCEC | PCPG | | | ENSG00000225439 | ENSG00000135631 | RAB11FIP5 | GBM,KICH,PCPG,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000140386 | SCAPER | GBM,LGG,PCPG,SARC,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000149294 | NCAM1 | GBM,LGG,PCPG,SARC,TGCT | PCPG | | | ENSG00000225439 | ENSG00000161682 | FAM171A2 | GBM,KIRP,LUSC,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000163539 | CLASP2 | GBM,LGG,PCPG,SARC,TGCT | PCPG | | | ENSG00000225439 | ENSG00000164038 | SLC9B2 | GBM,LAML,LGG,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000169169 | CPT1C | GBM,OV,PCPG,TGCT,UCEC,UCS | PCPG | | | ENSG00000225439 | ENSG00000173064 | HECTD4 | GBM,LAML,LGG,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000186310 | NAP1L3 | GBM,KIRP,LGG,PCPG,TGCT,THCA | PCPG | | | ENSG00000225439 | ENSG00000196227 | FAM217B | GBM,KICH,LGG,PCPG,SARC,TGCT,THCA,UCEC,UCS | PCPG | | | ENSG00000225439 | ENSG00000198910 | L1CAM | GBM,KICH,KIRP,LGG,PCPG | PCPG | | | ENSG00000225439 | ENSG00000105514 | RAB3D | KICH,KIRP,PCPG,SARC,TGCT | PCPG | | | ENSG00000225439 | ENSG00000109576 | AADAT | KICH,LUSC,OV,PCPG,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000111752 | PHC1 | KICH,LUAD,LUSC,PCPG,SARC,THCA,UVM | PCPG | | | ENSG00000225439 | ENSG00000117020 | AKT3 | KICH,KIRC,KIRP,LGG,PCPG,SARC,TGCT,UVM | PCPG | | | ENSG00000225439 | ENSG00000119865 | CNRIP1 | KICH,LAML,LGG,MESO,PCPG,TGCT,UVM | PCPG | | | ENSG00000225439 | ENSG00000134313 | KIDINS220 | KICH,KIRC,KIRP,LAML,LGG,PCPG,SARC,TGCT | PCPG | | | ENSG00000225439 | ENSG00000144320 | LNPK | KICH,KIRP,LGG,MESO,PCPG,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000163029 | SMC6 | KICH,KIRP,PCPG,UCEC,UVM | PCPG | | | ENSG00000225439 | ENSG00000165572 | KBTBD6 | KICH,LAML,LGG,PCPG,SARC | PCPG | | | ENSG00000225439 | ENSG00000170417 | TMEM182 | KICH,KIRC,KIRP,PCPG,THCA | PCPG | | | ENSG00000225439 | ENSG00000170921 | TANC2 | KICH,KIRP,LGG,PCPG,TGCT | PCPG | | | ENSG00000225439 | ENSG00000186889 | TMEM17 | KICH,KIRP,PCPG,SARC,TGCT,UVM | PCPG | | | ENSG00000225439 | ENSG00000197860 | SGTB | KICH,KIRP,LGG,MESO,PCPG,UCS | PCPG | | | ENSG00000225439 | ENSG00000134490 | TMEM241 | KIRC,LGG,MESO,PCPG,UVM | PCPG | | | ENSG00000225439 | ENSG00000198513 | ATL1 | KIRC,LGG,PCPG,THCA,UVM | PCPG | | | ENSG00000225439 | ENSG00000111261 | MANSC1 | KIRP,MESO,PCPG,THCA,UVM | PCPG | | | ENSG00000225439 | ENSG00000165240 | ATP7A | KIRP,LAML,PCPG,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000170264 | FAM161A | KIRP,LUSC,OV,PCPG,SARC,TGCT,THCA,UCEC,UCS,UVM | PCPG | | | ENSG00000225439 | ENSG00000187325 | TAF9B | KIRP,PCPG,SARC,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000273820 | USP27X | KIRP,LGG,PCPG,SARC,UVM | PCPG | | | ENSG00000225439 | ENSG00000143630 | HCN3 | LAML,LUSC,PCPG,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000186767 | SPIN4 | LAML,PCPG,TGCT,THCA,UCS | PCPG | | | ENSG00000225439 | ENSG00000131089 | ARHGEF9 | LGG,PCPG,SARC,TGCT,UCS | PCPG | | | ENSG00000225439 | ENSG00000174599 | TRAM1L1 | PCPG,SARC,TGCT,THCA,UVM | PCPG | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000225439 | ENST00000529783 | CIB1 | ENSG00000185043 | ENST00000328649 | -0.1006 | 1 | - | PCPG | | ENSG00000225439 | ENST00000529783 | CIB1 | ENSG00000185043 | ENST00000612800 | -0.1747 | 1 | - | PCPG | | ENSG00000225439 | ENST00000423477 | CIB1 | ENSG00000185043 | ENST00000612800 | -0.1393 | 269 | - | PCPG | | ENSG00000225439 | ENST00000423477 | LRRC25 | ENSG00000175489 | ENST00000339007 | -0.2428 | 1499 | - | PCPG | | ENSG00000225439 | ENST00000423477 | LRRC25 | ENSG00000175489 | ENST00000595840 | -0.2428 | 1504 | - | PCPG | | ENSG00000225439 | ENST00000423477 | SLC8B1 | ENSG00000089060 | ENST00000552613 | -0.1130 | 261 | - | PCPG | | ENSG00000225439 | ENST00000533563 | CIB1 | ENSG00000185043 | ENST00000612800 | -0.1324 | 137 | - | PCPG | | ENSG00000225439 | ENST00000533563 | LRRC25 | ENSG00000175489 | ENST00000339007 | -0.3019 | 1367 | - | PCPG | | ENSG00000225439 | ENST00000533563 | LRRC25 | ENSG00000175489 | ENST00000595840 | -0.3019 | 1372 | - | PCPG | | ENSG00000225439 | ENST00000533563 | SLC8B1 | ENSG00000089060 | ENST00000549069 | -0.1115 | 1 | - | PCPG | | ENSG00000225439 | ENST00000533563 | SLC8B1 | ENSG00000089060 | ENST00000552613 | -0.1149 | 1 | - | PCPG |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000225439.2 | ENST00000529783.1 | 85 | 216 | 473 | | ENSG00000225439.2 | ENST00000423477.2 | 87 | 51 | 314 | | ENSG00000225439.2 | ENST00000533563.1 | 132 | 390 | 788 |
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