 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | GOLGA8A,RFX7,PUS10,AGAP6,LCOR,RBM6,XRN1,KDM7A,TRMT13,PDK1,TRIM66,MFSD8,S100PBP,NPAT,CCNT2,RBM5,RC3H1,NKTR,CBLB,ZFC3H1,SETX,ZFP62,MYSM1,VCPIP1,MKLN1,FNBP4,SMG1,ARHGEF7,PHF11,N4BP2L2,PPWD1,DMTF1,PIGL,OGT,CHD1,CHD2,RBM25,INO80D,ORC2,DNAJB14,FBXW7,VPS13A,TPP2,REV1,MAP3K2,PTAR1,FRYL,KHDC4,MLH3,JMJD1C,SF3B1,TIA1,PPP4R3A,PNISR,UBN2,PRPF39,USP45,RESF1,ATXN7,OGA,LRIG2,ANKRD10,TP53INP1,VPS13C,RBM33,PAN3,DDX17,HERC4,NEMF,OFD1,ATAD2B | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | PRPF38B,SMG1,RBM6,LCOR,DDX17,MDM4,PAN3,CASP10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLC25A11 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000225205 | ENSG00000152256 | PDK1 | COAD,KIRC,LAML,STAD,TGCT | KIRC | | | ENSG00000225205 | ENSG00000175265 | GOLGA8A | COAD,ESCA,KIRC,STAD,TGCT | KIRC | | | ENSG00000225205 | ENSG00000204149 | AGAP6 | COAD,ESCA,KIRC,STAD,TGCT | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000225205.4 | ENST00000442417.4 | 100 | 428 | 126 | | ENSG00000225205.4 | ENST00000450443.1 | 142 | 468 | 40 | | ENSG00000225205.4 | ENST00000416080.1 | 142 | 535 | 107 | | ENSG00000225205.4 | ENST00000444919.1 | 77 | 537 | 304 | | ENSG00000225205.4 | ENST00000436922.1 | 86 | 154 | 411 |
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