 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | AP2S1,ATP5PB,MRPL37,FTL,NOP10,PSMD8,SLC25A3,GLRX3,ATP5MC3,SDHB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000225032 | ENST00000425991 | exon_skip_370518 | chr22:50247691-50247776 | -14.05 | -0.2989 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_382458 | chr3:38131595-38131638 | -14.42 | -0.4972 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_4796 | chr1:41007448-41007545 | -12.68 | -0.2438 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_41841 | chr10:68756272-68756483 | -21.04 | -0.1012 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_290158 | chr17:42953723-42953778 | -8.43 | -0.1833 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_300663 | chr19:1425877-1425960 | -10.52 | -0.2843 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_302168 | chr19:10680345-10680443 | -13.28 | -0.1492 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_327748 | chr2:95410863-95411026 | -20.83 | -0.1398 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000225032 | ENST00000425991 | exon_skip_470226 | chr7:103307595-103307708 | -11.77 | -0.1509 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127817866-127818005 | 247.00 | -122.79 | 148 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127816443-127816608 | 237.00 | -134.35 | 168 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127817427-127817572 | 235.00 | -146.86 | 150 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127816206-127816350 | 231.00 | -134.41 | 148 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127816067-127816197 | 227.00 | -107.62 | 125 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127817698-127817850 | 221.00 | -129.72 | 156 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127816634-127816773 | 220.00 | -140.46 | 148 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127817145-127817303 | 214.00 | -140.39 | 162 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127817567-127817710 | 201.00 | -123.89 | 145 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127816766-127816914 | 192.00 | -147.50 | 149 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000439298 | chr9:127816929-127817082 | 173.00 | -142.78 | 152 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000425991 | chr9:127818291-127818436 | 232.00 | -144.47 | 138 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000425991 | chr9:127818451-127818619 | 229.00 | -147.80 | 159 | NA | | ENSG00000225032 | hsa-mir-1307 | ENST00000425991 | chr9:127818120-127818274 | 209.00 | -146.26 | 156 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000225032 | ENST00000439298 | AP2S1 | ENSG00000042753 | ENST00000352203 | -0.1356 | 545 | UCEC | - | | ENSG00000225032 | ENST00000439298 | AP2S1 | ENSG00000042753 | ENST00000601498 | -0.1260 | 883 | UCEC | - | | ENSG00000225032 | ENST00000439298 | AP2S1 | ENSG00000042753 | ENST00000599990 | -0.1260 | 883 | UCEC | - | | ENSG00000225032 | ENST00000439298 | AP2S1 | ENSG00000042753 | ENST00000593442 | -0.1260 | 883 | UCEC | - | | ENSG00000225032 | ENST00000439298 | AP2S1 | ENSG00000042753 | ENST00000263270 | -0.1411 | 621 | UCEC | - | | ENSG00000225032 | ENST00000439298 | AP2S1 | ENSG00000042753 | ENST00000597020 | -0.1411 | 626 | UCEC | - | | ENSG00000225032 | ENST00000439298 | NOP10 | ENSG00000182117 | ENST00000328848 | -0.1124 | 582 | UCEC | - | | ENSG00000225032 | ENST00000439298 | NOP10 | ENSG00000182117 | ENST00000557912 | -0.1128 | 588 | UCEC | - | | ENSG00000225032 | ENST00000425991 | AP2S1 | ENSG00000042753 | ENST00000352203 | -0.1494 | 15 | UCEC | - | | ENSG00000225032 | ENST00000425991 | AP2S1 | ENSG00000042753 | ENST00000601498 | -0.1533 | 37 | UCEC | - | | ENSG00000225032 | ENST00000425991 | AP2S1 | ENSG00000042753 | ENST00000599990 | -0.1533 | 37 | UCEC | - | | ENSG00000225032 | ENST00000425991 | AP2S1 | ENSG00000042753 | ENST00000593442 | -0.1533 | 37 | UCEC | - | | ENSG00000225032 | ENST00000425991 | AP2S1 | ENSG00000042753 | ENST00000263270 | -0.1495 | 46 | UCEC | - | | ENSG00000225032 | ENST00000425991 | AP2S1 | ENSG00000042753 | ENST00000597020 | -0.1439 | 51 | UCEC | - | | ENSG00000225032 | ENST00000425991 | NOP10 | ENSG00000182117 | ENST00000328848 | -0.1009 | 147 | UCEC | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000225032.4 | ENST00000439298.4 | 117 | 351 | 1 | | ENSG00000225032.4 | ENST00000425991.1 | 195 | 513 | 1100 |
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