 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLC35C1,UBE2I,GAPDH,DPP9,AKT1,MGAT4B,CAPN15,ATXN2L,QSOX1,MAN2B1,KCTD5,ZYX,LIMK1,ANXA2,PML,LDHA,EEF2,PLOD3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000224616 | ENST00000421185 | exon_skip_111863 | chr14:23565815-23565892 | -19.97 | -0.3170 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000224616 | ENST00000421185 | exon_skip_140232 | chr16:634888-634956 | -9.98 | -0.2935 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000224616 | ENST00000421185 | exon_skip_149052 | chr17:8289502-8289588 | -14.35 | -0.5979 | RANGRF | ENST00000226105 | Frame-shift | | ENSG00000224616 | ENST00000421185 | exon_skip_320483 | chr19:48813455-48813552 | -13.43 | -0.1865 | HSD17B14 | ENST00000263278 | Frame-shift | | ENSG00000224616 | ENST00000421185 | exon_skip_494079 | chr8:144099080-144099205 | -20.42 | -0.1983 | SHARPIN | ENST00000398712 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000224616 | ENST00000421185 | ANXA2 | ENSG00000182718 | ENST00000332680 | -0.1443 | 1 | KIRP | - | | ENSG00000224616 | ENST00000421185 | ANXA2 | ENSG00000182718 | ENST00000558503 | -0.1184 | 1 | KIRP | - | | ENSG00000224616 | ENST00000421185 | CAPN15 | ENSG00000103326 | ENST00000566977 | -0.1602 | 42 | KIRC,KICH | - | | ENSG00000224616 | ENST00000421185 | DPP9 | ENSG00000142002 | ENST00000601720 | -0.1877 | 5 | KIRC,KICH | - | | ENSG00000224616 | ENST00000421185 | DPP9 | ENSG00000142002 | ENST00000597849 | -0.1264 | 1 | KIRC,KICH | - | | ENSG00000224616 | ENST00000421185 | AKT1 | ENSG00000142208 | ENST00000555458 | -0.1263 | 16 | KICH | - | | ENSG00000224616 | ENST00000421185 | AKT1 | ENSG00000142208 | ENST00000554192 | -0.1079 | 1 | KICH | - | | ENSG00000224616 | ENST00000421185 | AKT1 | ENSG00000142208 | ENST00000544168 | -0.1169 | 44 | KICH | - | | ENSG00000224616 | ENST00000421185 | EEF2 | ENSG00000167658 | ENST00000600794 | -0.1560 | 1 | KICH | - | | ENSG00000224616 | ENST00000421185 | EEF2 | ENSG00000167658 | ENST00000309311 | -0.1582 | 1 | KICH | - | | ENSG00000224616 | ENST00000421185 | ATXN2L | ENSG00000168488 | ENST00000564304 | -0.1298 | 1 | KICH | - | | ENSG00000224616 | ENST00000421185 | ATXN2L | ENSG00000168488 | ENST00000565971 | -0.1214 | 1 | KICH | - | | ENSG00000224616 | ENST00000421185 | ATXN2L | ENSG00000168488 | ENST00000566007 | -0.2419 | 20 | KICH | - | | ENSG00000224616 | ENST00000421185 | PLOD3 | ENSG00000106397 | ENST00000454310 | -0.1284 | 1 | KIRC,KIRP | - | | ENSG00000224616 | ENST00000421185 | PLOD3 | ENSG00000106397 | ENST00000223127 | -0.1284 | 1 | KIRC,KIRP | - | | ENSG00000224616 | ENST00000421185 | PLOD3 | ENSG00000106397 | ENST00000424135 | -0.1153 | 1 | KIRC,KIRP | - | | ENSG00000224616 | ENST00000421185 | QSOX1 | ENSG00000116260 | ENST00000392029 | -0.2180 | 1 | KICH | - | | ENSG00000224616 | ENST00000421185 | ZYX | ENSG00000159840 | ENST00000322764 | -0.1105 | 1 | KIRP | - | | ENSG00000224616 | ENST00000421185 | ZYX | ENSG00000159840 | ENST00000354434 | -0.1051 | 1 | KIRP | - | | ENSG00000224616 | ENST00000421185 | ZYX | ENSG00000159840 | ENST00000392910 | -0.1051 | 1 | KIRP | - | | ENSG00000224616 | ENST00000421185 | ZYX | ENSG00000159840 | ENST00000436448 | -0.1115 | 14 | KIRP | - | | ENSG00000224616 | ENST00000421185 | LIMK1 | ENSG00000106683 | ENST00000418310 | -0.1042 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | LIMK1 | ENSG00000106683 | ENST00000336180 | -0.1042 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | LIMK1 | ENSG00000106683 | ENST00000538333 | -0.1309 | 38 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | GAPDH | ENSG00000111640 | ENST00000229239 | -0.1663 | 1 | KIRC,KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | GAPDH | ENSG00000111640 | ENST00000396856 | -0.1663 | 1 | KIRC,KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | GAPDH | ENSG00000111640 | ENST00000396861 | -0.1663 | 1 | KIRC,KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | GAPDH | ENSG00000111640 | ENST00000396859 | -0.1530 | 1 | KIRC,KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | GAPDH | ENSG00000111640 | ENST00000396858 | -0.2597 | 1 | KIRC,KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | GAPDH | ENSG00000111640 | ENST00000619601 | -0.1663 | 1 | KIRC,KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000518778 | -0.1451 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000337755 | -0.1451 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000292591 | -0.1451 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000519836 | -0.1576 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000520969 | -0.1451 | 1 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000518980 | -0.2937 | 14 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | MGAT4B | ENSG00000161013 | ENST00000523329 | -0.1753 | 15 | KICH,KIRP | - | | ENSG00000224616 | ENST00000421185 | LDHA | ENSG00000134333 | ENST00000536528 | -0.1446 | 1 | KIRC | - | | ENSG00000224616 | ENST00000421185 | PML | ENSG00000140464 | ENST00000395135 | -0.2287 | 1 | KIRC | - | | ENSG00000224616 | ENST00000421185 | PML | ENSG00000140464 | ENST00000567543 | -0.2902 | 162 | KIRC | - | | ENSG00000224616 | ENST00000421185 | PML | ENSG00000140464 | ENST00000436891 | -0.1477 | 1 | KIRC | - | | ENSG00000224616 | ENST00000421185 | PML | ENSG00000140464 | ENST00000564428 | -0.2287 | 1 | KIRC | - | | ENSG00000224616 | ENST00000421185 | PML | ENSG00000140464 | ENST00000565239 | -0.1982 | 80 | KIRC | - | | ENSG00000224616 | ENST00000421185 | PML | ENSG00000140464 | ENST00000567606 | -0.1477 | 1 | KIRC | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000224616.1 | ENST00000421185.1 | 38 | 371 | 255 |
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