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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000223797

Summary for ENTPD3-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000223797

Gene symbol

ENTPD3-AS1

Gene nameENTPD3 antisense RNA 1
HGNC

26710

Entrez ID

285266

Gene typeantisense
Synonyms03p22.1|ENTPD3-AS1
UniProtAcc

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Structure and expression level for ENTPD3-AS1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002237971.999548e+02-1.108445e+009.550482e-02-1.160617e+013.830000e-314.130000e-30DOWNKIRC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000223797-4.742855e-012.662895e-06KICH6.644872e-06
ENSG00000223797-3.544239e-011.958354e-19KIRC1.376968e-18
ENSG00000223797-3.008586e-011.597551e-07KIRP1.018443e-06

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lncRNA-Protein interaction for ENTPD3-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for ENTPD3-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
ARL16,UXT,TCEA2,TUBGCP2,THAP4,CTF1,BLVRB,TMEM234,POLD2,CIRBP,NUDT18,PSMB7,PET100,DYNC2LI1,CMC2,ATP5MG,WDR83OS,C1orf56,DYNC2I2,SIRT3,HMCES,CACFD1,BCS1L,RPS27A,DPP7,MRPL46,TIMM17B,MIEF2,B3GAT3,PNKD,PIGP,METTL5,STK16,TMEM203,SNRPA,SMUG1,WDR54,APTX,TRAPPC2L,CCNQ,LZTFL1,KBTBD3,FAAP20,COMMD7,COA3,SURF2,EIF3G,PMM1,TPRN,EBNA1BP2,NDUFA3,PPIH,INPP5K,CDK2AP2,SVBP,GKAP1,SUGP1,NAA80,SIGIRR,FAM104B,GTF2H5,SNX11,USE1,CYB5D2,SDF2,POLDIP2,RAB4B,ERAL1,UQCC2,VKORC1,LYRM4,CISD3,MPLKIP,LYPLAL1,MST1,RING1,PSENEN,SSU72,CHKB,UROD,CBY1,ABHD14B,WDR83,USF1,TIMMDC1,C3orf18,ANKRD39,DHPS,MPST,WASHC3,BABAM1,MRPL14,MON1A,PIH1D1,ELMO3,TSSC4,DDX49,PFDN6,ATP5MK,C3orf62,CSNK2B,YJU2,FUOM,CCDC28A,TMEM101,RUVBL1,MEA1,COPZ2,RPL35,NDUFA2,BORCS6,MIIP,TMEM160,PARL,RPP38,ATP5PD,FDX2,HDHD3,C22orf39,MTLN,FBXW4,MRPS2,GCAT,TSEN54,FAM229B,ZNF593,MRPL57,KIF9,PFDN5,LRTOMT,FBXW9,HMGN3,CCDC167,NDUFB1,APEH,CZIB,ACOT8,SPCS1,PDRG1,HDDC2,ELOF1,RPA3,COMMD8,HEXD,COA6,SDHAF2,EEFSEC,RPL23A,ANAPC11,CCDC24,MRPS25,RRP7A,CCDC12,EIF3K,ILVBL,PTRHD1,FDXR,DECR2,ALKBH3,THOC7,ERCC5,DDT,MCRIP1,SDF2L1,PHYHD1,CYB561D2,SLC9A3R2,PCYT2,ISCA2,TRIR,JMJD4,SCNM1,OARD1,PRADC1,MMAB,SLC27A5,NDUFB3,ADI1,MRPL55,EMG1,HMGCL,MED7,SLC25A20,SSR4,COX6B1,FAM98C,NICN1,IP6K2,PPOX,SWI5,IFTAP,RPL23,FAHD2B,C19orf53,INO80C,NDUFAF3,MRPL20,COX16,GUK1,EIF2B4,MRPL28,PHF7,HSCB,ADPRM,UCHL3,MIX23,HPF1,ACYP2,RPL37A,LSM3,SURF1,NUBP2,NUTF2,C6orf52,COMMD9,TMEM220,CLN5,FIS1,GMDS,GTPBP6,IMP4,MRPL24,SPACA9,STYXL1,MAN1B1,SMPD2,UBL7,BAP1,ANAPC13,TCTA,TMEM251,CCDC106,FBXO44,NELFE,METTL23,GLT8D1,TMEM120A,C17orf75,P4HTM,PCED1A,STX8,TUSC2,MVB12A,ELP5,BRMS1,YIPF1,THOC6,RAB17,UBOX5,MPND,DNAJC19,PQBP1,LENG1,TMEM186,MRPS23,PEX11G,CCHCR1,PRMT7,ZFYVE19,TOMM22,IFI27L2,REXO4,SGF29,NEK8,NXT1,POLR2L,SERF2,RPS10,QARS1,COMMD1,TRPT1,EBP,TATDN2,MRPS18B,VPS4A,NIT1,DAD1,MRPS9,HEMK1,ROGDI,POMGNT2,CD2BP2,TMEM218,SMIM12,TMEM199,PTOV1,DMAC1,PYURF,SLC41A3,FRG1,TMEM134,POP5,ORAI3,NTHL1,MYL5,UBXN6,SOD1,CUEDC2,MKKS,UBAC1,SCAND1,TKFC,DSTN,UBXN11,HSPBP1,PTCD1,CCDC71,NDUFAF2,B9D1,PPCDC,FARS2,NCAPH2,ATPAF2,AKR7A2,AMT,JOSD2,CCDC51,TMEM187,NOSIP,MVD,ENKD1,IDH3G,SUMF1,C11orf1,MORN2,NUDT1,PEF1,ZBTB8OS,NUDC,MRPL34,PSMA2,DALRD3,JPT1,CDPF1,MRPL47,UBE2J2,NAT14,MYL12B,DNPH1,C1orf35,MTIF3,NPRL2,ZCWPW1,MRPL2,SNX17,VAMP8,SMIM22,HDAC11,ZMYND12,HHLA3,MIEN1,LSM5,H2AJ,SGSM3,UQCRH,WDR45,COPS9,DHRS12,ZMAT5,STX10,ACBD4,PMF1-BGLAP,SNU13,LRRC23,CREB3,TMEM223,SNRPD3,NDUFB5,UQCRC1,RPL36AL,VAMP5,SLC25A10,ENDOV,DPY30,FAM207A,MRPL11,ITPA,RAMP2,FAM162A,ELP6,COX7B,ALKBH7,TMEM258,RTN2,GEMIN7,GEMIN6,C9orf116,MZT2B,PHF1,CETN2,HDAC10,CHADL,KLC4,SCRN2,ATRAID,ANKS3,NOXA1,GON7,SMDT1,SEC61G,PIGQ,LAMTOR1,TAF10,RNF25,COX4I1,TMEM60,ECSIT,SAC3D1,DYRK4,CENPS,OGG1,MESP1,MZT2A,PSMG4,METTL6,EIF2B3,RETREG3,ARFRP1,CIAO2B,MAGIX,IFI27L1,AAMDC,MRPL27,TRAPPC3,MYL6B,WDR46,C19orf25,ARPC4,MYG1,ABHD10,PSMB1,CKS1B,RFT1,NDUFA5,ABHD14A,LSM2,COA5,ACY1,ECSCR,SUCLG1,C14orf93,CKLF,ATP5PF,RPS13,FUNDC2,MRPL43,TOMM7,DHRS4,XPA,RUVBL2,BDH2,SMIM19,NDUFAF8,HSD17B10,RPS17,TPRA1,CHCHD4,SDSL,ATP5PB,PSMD6,UBA52,CFDP1,C15orf61,RPS29,DNAJC30,TATDN3,TMEM115,PDHB,MRPS26,HDDC3,GPANK1,SMIM1,FHIT,NDUFA13,CHCHD5,C7orf50,C1orf122,DCTN3,C16orf86,NDUFAB1,RRNAD1,GADD45GIP1,SNRPD2,ZSWIM7,SNF8,EIF6,SLC25A11,HRAS,HSBP1,NAGLU,HSD17B8,OSCP1,NDUFA4,BANF1,BCL7C,SEC13,SLC25A1,TMEM9,RPL27,NKIRAS1,TCEA3,CINP,GSTZ1,IFT27,RECQL5,ZNHIT1,PHKG2,NARF,PMF1,HACL1,TIMM10,EMC3,POLR2J,PPP1R16A,LRRC75B,SS18L2,SENP3,PTPMT1,RFXANK,ARL3,NT5C3B,UBE2D4,MED31,CFAP410,VAMP2,MRTO4,NUDT2,CTSF,IQCD,C1orf50,DNAJB2,TMEM99,APOM,SERPINB6,LDHD,STOML2,COX17,ATP5MJ,RABAC1,GET3,UBL5,RPS8,RPS11,GAMT,AK8,TTLL1,STX5,OCIAD2,PARD6A,GPATCH3,ING4,NDUFB7,RRP8,UBXN1,MRPS33,THYN1,ETFB,IFT46,ERP29,LRRC29,FAM228B,WASHC1,RWDD2B,CDC26,RPL36A,NDUFC1,COA8,THAP3,MTFR1L,MOSPD3,PCP2,LYRM1,OAZ1,MOB2,SPATA2L,COMMD6,COASY,RPS24,NDUFB6,TMA7,ITGAE,EMC9,YBEY,TPRKB,SPATA24,TPRG1L,KLHDC3,NEDD8,DUSP28,BOLA1,PXMP2,TSR3,RPS19BP1,SMIM4,YPEL3,SAP30BP,BCDIN3D,TMEM11,C3orf33,PRPSAP1,PIN1,GALK1,TMEM238,RNF5,NDUFV3,DGCR6L,PMPCA,MRPS14,SH3GLB2,HSD11B1L,FASTK,TMEM125,ZNRD2,TMEM54,HSPB11,HINT1
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
C14orf93,APITD1,NUDC,PEX11G,COX16,PHF7,C4orf27,CCDC167,METTL5,PQBP1,CUEDC2,HEMK1,GPATCH3,SH3GLB2,ARL3,EIF3G,LYRM4,FKBPL,PIH1D1,MZT2B,TATDN2,COX6A1,TOMM22,OSCP1,TUSC2,IDNK,MIIP,TMEM134,VAMP2,C3orf62,HSD17B8,NDUFB5,MYL5,BAP1,TIMM22,C14orf2,MANBAL,PPCDC,NT5C,EBNA1BP2,RPL35,UQCC2,POLR2J,PTCD1,THOC7,HCFC1R1,NIT2,SLC25A11,SLC25A38,GADD45GIP1,C16orf91,ZFAND2A,NDUFA2,C22orf39,ECSCR,ROGDI,DHPS,METTL6,TMEM99,NDUFS4,C3orf18,HDHD3,UBXN1,COX7C,RPL23,POLDIP2,TMEM9,NOSIP,THAP4,GALM,PSMB6,UBXN6,AIP,DYRK4,GPANK1,TATDN3,BDH2,LDHD,ICT1,NDUFB1,COX7B,PSMD4,NDUFB7,LSM2,DAD1,UBALD2,QTRT1,C17orf75,NDUFAB1,C6orf52,ZSWIM7,INO80C,SAT2,C19orf25,IFI27L1,THOC6,SCNM1,COA6,COMMD3,VPS25,GTF2H5,WDR13,C12orf45,BABAM1,KRT10,POP5,MZT2A,SGF29,SLC25A10,COPS6,KCTD2,MRPL14,TTLL1,C20orf196,APEH,ECSIT,PSMD6,ILVBL,PPP1R35,VAMP5,DYNLRB1,DNAJC19,SNRPC,STOML2,ATRAID,ITPA,TIMM17B,THAP3,FBXW9,LAMTOR4,COX17,OCEL1,C6orf203,BANF1,GRHPR,NUDT7,RBKS,HSCB,COX8A,SURF1,SUMF1,HDDC2,TMEM199,ELAC1,C14orf142,FAM195B,MRPL33,RWDD2B,ABHD14B,APOM,ARIH2OS,LHPP,RBP7,RPS27,NUDT1,UBA52,UXT,ANKRD39,SGSM3,VPS4A,ZNHIT3,GUK1,PXMP2,MIEF2,OXLD1,GSTP1,SPATA24,ELOF1,C1orf56,CCDC53,NICN1,PSMB1,ING4,C7orf50,CKS1B,FHIT,USF1,TPRA1,MPLKIP,TMEM160,MRPL24,INPP5K,RPSA,NDUFA3,CCDC94,PSMA2,CMC1,CCDC106,NDUFA5,NDUFS5,RTN2,RPL23A,RRP7A,DYNC2LI1,RUVBL1,TIMMDC1,MRPL47,TRMT112,USMG5,CIRBP
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ENTPD3-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
CNOT1,GRAMD1A,KPNB1,TUBA1B,SLC35E1,MNT,SLC36A1,AEBP2,MEGF8,MYH9,PRKACA,RNF4,NAF1,RALGAPB,SH3PXD2A,MARK4,FCHSD2,TCF20,NARS1,TAF4,SIPA1L1,KHNYN,UBR1,INPPL1,PCDHGC3,GNL3L,DNM2,CHD8,EDC4,MED14,TRIP11,WIZ,PTPN11,STAU2,MCM3AP,ACTN1,TTYH3,ST3GAL1,GYS1,SMG1,CREBBP,HTT,POLR2A,SLAIN2,PPP6R1,DNAJC14,NDEL1,MAN2A2,SCFD2,SEC24B,ANKRD11,FLII,KATNAL1,ATP2A2,DIAPH2,CELF2,MACF1,KMT2D,SON,LIMK1,NUMB,SPRED2,PDPK1,M6PR,AP3D1,TAF1,TMEM127,ATXN2L,RNF111,TP53BP1,PCNX1,PTPRE,TTC3,NOMO2,AP2A1,SEC24D,USP32,OTUD4,CHPF2,KIDINS220,CDC27,IREB2,SEPTIN11,ELK1,POFUT1,RNF31,CLIP1,SART3,CORO1C,DOP1B,KLF7,DDX6,DNMT1,SEC23A,RAI1,NCOA2,TWF1,AFF4,CLCC1,PRKDC,CBFB,CLEC16A,PRR14L,KLF13,UBR5,SMAD1,WDR81,ABHD2,SAMD4A,TBC1D2B,TM9SF1,BAZ2A,LPCAT3,HELZ2,USP9X,NIPA2,MYOF,NUP62,CDK17,DYNC1LI2,KDM5C,POM121,MAP3K3,MIDEAS,MTMR1,NOTCH3,RASA1,UBA2,GNPTAB,TGFBRAP1,PTPN9,WNK1,STAT6,SSH1,TMEM131,ERO1A,MED13L,SF3B3,TICAM1,LTN1,NUP98,MAP4K4,KDM2A,ACTR2,PLEKHG2,U2AF2,DOCK9,SYNJ1,EEF2,GPATCH8,ABL2,CHD2,TM9SF4,ERC1,ICAM1,KIF2A,GTF2I,REST,MGRN1,EIF4G2,SOS2,CSNK1A1,CLASP1,NIN,DYNC1H1,CS,HUWE1,XPO6,RANBP2,ACTN4,MIS18BP1,TEP1,SEC31A,TBC1D9B,BACH1,IL6ST,DYRK1A,TRAF3,AFF1,UGGT1,CARM1,ANO6,TAF2,TMEM184C,NACC1,CAST,AKT1,BDP1,SH3PXD2B,SCAF4,TAOK2,F2R,TECPR2,ARFGEF1,EIF2AK4,AMBRA1,MORC2,FNDC3B,SAMD4B,UBFD1,NEMF,INPP4A,SRCAP,ZDHHC7,SPOPL,BAZ1A,POLG,TAF5L,NRDC
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000223797ENST00000420850exon_skip_289780chr17:41896619-41896649-9.46-3.1533ACLYENST00000352035,ENST00000590151In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for ENTPD3-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000223797ENSG00000102981PARD6ABLCA,DLBC,GBM,KICH,KIRC,KIRP,LGG,THCA,THYMKIRC
ENSG00000223797ENSG00000144647POMGNT2BLCA,KICH,KIRC,THCA,UVMKIRC
ENSG00000223797ENSG00000248487ABHD14ABLCA,BRCA,DLBC,GBM,KICH,KIRC,KIRP,LGG,LIHC,LUAD,OV,PRAD,THCA,THYMKIRC
ENSG00000223797ENSG00000010256UQCRC1BRCA,DLBC,GBM,KIRC,KIRP,LGG,LIHC,OV,PRAD,THCA,THYMKIRC
ENSG00000223797ENSG00000145029NICN1BRCA,DLBC,KICH,KIRC,KIRP,LIHC,LUAD,OV,PRAD,SKCM,THCA,UVMKIRC
ENSG00000223797ENSG00000157326DHRS4BRCA,DLBC,KIRC,PRAD,THCA,THYMKIRC
ENSG00000223797ENSG00000164062APEHBRCA,DLBC,KIRC,KIRP,LGG,LIHC,THYM,UVMKIRC
ENSG00000223797ENSG00000165698SPACA9BRCA,DLBC,GBM,KICH,KIRC,KIRP,THCA,UVMKIRC
ENSG00000223797ENSG00000175287PHYHD1BRCA,DLBC,KICH,KIRC,KIRP,UVMKIRC
ENSG00000223797ENSG00000267795SMIM22BRCA,KIRC,LUAD,OV,PRAD,THYMKIRC
ENSG00000223797ENSG00000100116GCATDLBC,KICH,KIRC,LGG,PRAD,THCA,THYMKIRC
ENSG00000223797ENSG00000112699GMDSDLBC,KICH,KIRC,KIRP,UVMKIRC
ENSG00000223797ENSG00000144199FAHD2BDLBC,GBM,KIRC,LUAD,SKCM,THYM,UVMKIRC
ENSG00000223797ENSG00000150281CTF1DLBC,KICH,KIRC,KIRP,UVMKIRC
ENSG00000223797ENSG00000163517HDAC11DLBC,KIRC,KIRP,LGG,SKCM,THCA,UVMKIRC
ENSG00000223797ENSG00000163541SUCLG1DLBC,GBM,KICH,KIRC,LGG,LUAD,THCAKIRC
ENSG00000223797ENSG00000168291PDHBDLBC,GBM,KICH,KIRC,KIRP,LUAD,SKCM,UVMKIRC
ENSG00000223797ENSG00000189043NDUFA4DLBC,GBM,KIRC,KIRP,LIHC,THCA,THYMKIRC
ENSG00000223797ENSG00000066185ZMYND12GBM,KICH,KIRC,KIRP,LUAD,SKCM,THCAKIRC
ENSG00000223797ENSG00000145020AMTKICH,KIRC,KIRP,LIHC,PRAD,UVMKIRC
ENSG00000223797ENSG00000149476TKFCKICH,KIRC,LGG,THCA,THYMKIRC
ENSG00000223797ENSG00000166816LDHDKIRC,KIRP,PRAD,THCA,UVMKIRC

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000223797ENST00000439293MAP4K4ENSG00000071054ENST00000347699-0.1307140KIRC-
ENSG00000223797ENST00000439293CORO1CENSG00000110880ENST00000546705-0.2182109KIRC-
ENSG00000223797ENST00000439293CORO1CENSG00000110880ENST00000421578-0.8543508KIRC-
ENSG00000223797ENST00000425156MAP4K4ENSG00000071054ENST00000347699-0.1621328KIRC-
ENSG00000223797ENST00000425156CORO1CENSG00000110880ENST00000546705-0.2141474KIRC-
ENSG00000223797ENST00000425156CORO1CENSG00000110880ENST00000421578-0.42401774KIRC-
ENSG00000223797ENST00000452768MAP4K4ENSG00000071054ENST00000347699-0.1621203KIRC-
ENSG00000223797ENST00000452768CORO1CENSG00000110880ENST00000546705-0.1993349KIRC-
ENSG00000223797ENST00000452768CORO1CENSG00000110880ENST00000421578-0.6863164KIRC-
ENSG00000223797ENST00000420850MAP4K4ENSG00000071054ENST00000347699-0.1260459KIRC-
ENSG00000223797ENST00000420850CORO1CENSG00000110880ENST00000546705-0.1611252KIRC-
ENSG00000223797ENST00000420850CORO1CENSG00000110880ENST00000421578-2.385025KIRC-
ENSG00000223797ENST00000439293PTPREENSG00000132334ENST00000471218-0.7050146KIRC-
ENSG00000223797ENST00000439293PTPREENSG00000132334ENST00000467366-0.7050145KIRC-
ENSG00000223797ENST00000425156TUBA1BENSG00000123416ENST00000336023-0.10291049KIRC-
ENSG00000223797ENST00000425156PTPREENSG00000132334ENST00000471218-2.7250810KIRC-
ENSG00000223797ENST00000425156PTPREENSG00000132334ENST00000467366-0.67631159KIRC-
ENSG00000223797ENST00000452768PTPREENSG00000132334ENST00000471218-0.7220305KIRC-
ENSG00000223797ENST00000452768PTPREENSG00000132334ENST00000467366-0.7220304KIRC-
ENSG00000223797ENST00000420850PTPREENSG00000132334ENST00000471218-2.555011KIRC-
ENSG00000223797ENST00000420850PTPREENSG00000132334ENST00000467366-2.555010KIRC-
ENSG00000223797ENST00000439293DIAPH2ENSG00000147202ENST00000355827-0.1290367KIRC-
ENSG00000223797ENST00000439293DIAPH2ENSG00000147202ENST00000373049-0.1290370KIRC-
ENSG00000223797ENST00000439293DIAPH2ENSG00000147202ENST00000373054-0.4608440KIRC-
ENSG00000223797ENST00000425156TTYH3ENSG00000136295ENST00000429448-0.1171268KIRC-
ENSG00000223797ENST00000425156DIAPH2ENSG00000147202ENST00000355827-0.1296457KIRC-
ENSG00000223797ENST00000425156DIAPH2ENSG00000147202ENST00000373049-0.1458457KIRC-
ENSG00000223797ENST00000425156DIAPH2ENSG00000147202ENST00000373054-0.66271748KIRC-
ENSG00000223797ENST00000452768TTYH3ENSG00000136295ENST00000429448-0.1171143KIRC-
ENSG00000223797ENST00000452768DIAPH2ENSG00000147202ENST00000373049-0.3200332KIRC-
ENSG00000223797ENST00000452768DIAPH2ENSG00000147202ENST00000373054-0.7529332KIRC-
ENSG00000223797ENST00000420850DIAPH2ENSG00000147202ENST00000355827-0.1231479KIRC-
ENSG00000223797ENST00000420850DIAPH2ENSG00000147202ENST00000373049-0.1231479KIRC-
ENSG00000223797ENST00000420850DIAPH2ENSG00000147202ENST00000373054-0.7236682KIRC-
ENSG00000223797ENST00000425156ERO1AENSG00000197930ENST00000556223-0.1218860KIRC-
ENSG00000223797ENST00000452768ERO1AENSG00000197930ENST00000556223-0.1218447KIRC-
ENSG00000223797ENST00000439293PCDHGC3ENSG00000240184ENST00000611950-0.2440305KIRC-
ENSG00000223797ENST00000439293PCDHGC3ENSG00000240184ENST00000617222-0.381710KIRC-
ENSG00000223797ENST00000425156PCDHGC3ENSG00000240184ENST00000611950-0.1832394KIRC-
ENSG00000223797ENST00000425156PCDHGC3ENSG00000240184ENST00000617222-0.33881474KIRC-
ENSG00000223797ENST00000452768PCDHGC3ENSG00000240184ENST00000611950-0.1832269KIRC-
ENSG00000223797ENST00000452768PCDHGC3ENSG00000240184ENST00000617222-0.2461193KIRC-
ENSG00000223797ENST00000420850PCDHGC3ENSG00000240184ENST00000611950-0.217115KIRC-
ENSG00000223797ENST00000420850PCDHGC3ENSG00000240184ENST00000617222-0.21349KIRC-
ENSG00000223797ENST00000439293NOTCH3ENSG00000074181ENST00000597756-0.2386111KIRC-
ENSG00000223797ENST00000439293GRAMD1AENSG00000089351ENST00000424536-0.1666445KIRC-
ENSG00000223797ENST00000439293PLEKHG2ENSG00000090924ENST00000458508-0.23841KIRC-
ENSG00000223797ENST00000439293PLEKHG2ENSG00000090924ENST00000598238-0.143515KIRC-
ENSG00000223797ENST00000439293PLEKHG2ENSG00000090924ENST00000596339-0.143534KIRC-
ENSG00000223797ENST00000439293PLEKHG2ENSG00000090924ENST00000594124-0.1073102KIRC-
ENSG00000223797ENST00000425156NOTCH3ENSG00000074181ENST00000595514-0.11801KIRC-
ENSG00000223797ENST00000425156NOTCH3ENSG00000074181ENST00000597756-0.4709994KIRC-
ENSG00000223797ENST00000425156GRAMD1AENSG00000089351ENST00000424536-0.11651856KIRC-
ENSG00000223797ENST00000425156ICAM1ENSG00000090339ENST00000264832-0.28571770KIRC-
ENSG00000223797ENST00000425156PLEKHG2ENSG00000090924ENST00000458508-0.27171335KIRC-
ENSG00000223797ENST00000425156PLEKHG2ENSG00000090924ENST00000596443-0.11621700KIRC-
ENSG00000223797ENST00000425156PLEKHG2ENSG00000090924ENST00000598238-0.1209647KIRC-
ENSG00000223797ENST00000425156PLEKHG2ENSG00000090924ENST00000596339-0.1421666KIRC-
ENSG00000223797ENST00000425156PLEKHG2ENSG00000090924ENST00000594124-0.11841290KIRC-
ENSG00000223797ENST00000452768NOTCH3ENSG00000074181ENST00000595514-0.1515133KIRC-
ENSG00000223797ENST00000452768NOTCH3ENSG00000074181ENST00000597756-0.4709581KIRC-
ENSG00000223797ENST00000452768PLEKHG2ENSG00000090924ENST00000458508-0.2061348KIRC-
ENSG00000223797ENST00000452768PLEKHG2ENSG00000090924ENST00000598238-0.1613271KIRC-
ENSG00000223797ENST00000452768PLEKHG2ENSG00000090924ENST00000596339-0.1595128KIRC-
ENSG00000223797ENST00000420850NOTCH3ENSG00000074181ENST00000595514-0.10161KIRC-
ENSG00000223797ENST00000420850NOTCH3ENSG00000074181ENST00000597756-0.2386254KIRC-
ENSG00000223797ENST00000420850GRAMD1AENSG00000089351ENST00000424536-0.1160431KIRC-
ENSG00000223797ENST00000420850PLEKHG2ENSG00000090924ENST00000458508-0.18751KIRC-
ENSG00000223797ENST00000420850PLEKHG2ENSG00000090924ENST00000596443-0.111643KIRC-
ENSG00000223797ENST00000420850PLEKHG2ENSG00000090924ENST00000598238-0.10732KIRC-
ENSG00000223797ENST00000420850PLEKHG2ENSG00000090924ENST00000596339-0.1147352KIRC-

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000223797.4ENST00000439293.43913132
ENSG00000223797.4ENST00000425156.46727230
ENSG00000223797.4ENST00000452768.41331156755
ENSG00000223797.4ENST00000420850.1100252554