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lncRNA: ENSG00000223552

Summary for CCR5AS

Gene summary

Gene information	Ensembl ID	ENSG00000223552
	Gene symbol	CCR5AS
	Gene name	CCR5 antisense RNA
	HGNC	54398
	Entrez ID
	Gene type	antisense
	Synonyms	03p21.31\|RP11-24F11.2\|CCR5AS
	UniProtAcc

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Structure and expression level for CCR5AS

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000223552	5.301987e+01	1.792107e+00	5.512695e-01	3.250873e+00	1.150513e-03	4.265866e-03	UP	GBM
ENSG00000223552	3.997428e+01	2.184435e+00	1.445357e-01	1.511346e+01	1.320000e-51	3.410000e-50	UP	KIRC
ENSG00000223552	9.446925e+01	3.965470e+00	4.295316e-01	9.232081e+00	2.650000e-20	4.450000e-19	UP	KICH
ENSG00000223552	4.691052e+01	1.171971e+00	3.661498e-01	3.200796e+00	1.370485e-03	7.339360e-03	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000223552	4.952196e-01	8.069319e-07	KICH	2.322811e-06
ENSG00000223552	3.673044e-01	7.416773e-21	KIRC	6.675095e-20

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lncRNA-Protein interaction for CCR5AS

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for CCR5AS

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CCR1,SAMHD1,FCER1G,SMCO4,CEBPA,SH3BGRL3,MYO1F,NAGK,ITGB2,CCR5,RAB20,ZMYND15,NPC2,APOBR,SELPLG,LILRB4,CD4,LILRB2,CD300C,FUCA1,TNFRSF1B,C1QB,SPI1,LRRC25,SNX20,HEXB,C1QC,ARHGAP27,ADA2,HCK,RENBP,PTAFR,SIGLEC7,FGR,BCL2A1,SIGLEC9,RBM47,CTSH,NAGA,TRPM2,TYROBP,FCGR3A,SLC7A7,PIK3R5,UNC93B1,SLC9A9,EFHD2,LAPTM5,CCRL2,ITGAL,PHF11,NFAM1,CXCL16,PPM1M,CLEC12A,CTSZ,EPSTI1,MVP,CLEC7A,C1QA,TLR1,B2M,ARRB2,FYB1,FPR1,RAP2B,CASP1,C3AR1,LAIR1,ADAP2,FBP1,CTSS,SIGLEC10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CCR5AS

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CCR5AS

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000223552	ENSG00000121797	CCRL2	COAD,DLBC,ESCA,GBM,KICH,KIRC,LAML,LUAD,MESO,PAAD,READ,STAD	GBM,KICH,KIRC
ENSG00000223552	ENSG00000000938	FGR	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000005844	ITGAL	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000010610	CD4	DLBC,GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000011600	TYROBP	DLBC,GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000028137	TNFRSF1B	DLBC,ESCA,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000049860	HEXB	DLBC,ESCA,GBM,LAML,MESO	GBM
ENSG00000223552	ENSG00000082074	FYB1	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000101160	CTSZ	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000101336	HCK	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000101347	SAMHD1	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000110876	SELPLG	DLBC,GBM,KIRC,LAML,MESO	KIRC
ENSG00000223552	ENSG00000119655	NPC2	DLBC,GBM,KIRC,LAML,MESO	GBM
ENSG00000223552	ENSG00000129450	SIGLEC9	DLBC,GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000131042	LILRB2	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000133106	EPSTI1	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000137752	CASP1	DLBC,GBM,KIRC,LAML,LUAD,MESO,PAAD	GBM,KIRC
ENSG00000223552	ENSG00000139832	RAB20	DLBC,ESCA,GBM,MESO,PAAD,READ	GBM
ENSG00000223552	ENSG00000141480	ARRB2	DLBC,ESCA,GBM,KICH,KIRC,LAML,MESO	KICH,KIRC
ENSG00000223552	ENSG00000141497	ZMYND15	DLBC,ESCA,GBM,KIRC,MESO	GBM,KIRC
ENSG00000223552	ENSG00000141506	PIK3R5	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000142185	TRPM2	DLBC,ESCA,GBM,KIRC,MESO	KIRC
ENSG00000223552	ENSG00000142347	MYO1F	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000142512	SIGLEC10	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000142634	EFHD2	DLBC,ESCA,KIRC,LAML,PAAD	KIRC
ENSG00000223552	ENSG00000142669	SH3BGRL3	DLBC,GBM,KIRC,LAML,PAAD,STAD	KIRC
ENSG00000223552	ENSG00000155465	SLC7A7	DLBC,ESCA,GBM,LAML,PAAD	GBM
ENSG00000223552	ENSG00000158869	FCER1G	DLBC,GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000159189	C1QC	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000160255	ITGB2	DLBC,GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000160791	CCR5	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000161921	CXCL16	DLBC,ESCA,GBM,KIRC,LAML,MESO,PAAD	GBM
ENSG00000223552	ENSG00000163131	CTSS	DLBC,ESCA,GBM,KIRC,LAML,LUAD,MESO,PAAD	GBM,KIRC
ENSG00000223552	ENSG00000163823	CCR1	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000165140	FBP1	DLBC,ESCA,GBM,LAML,PAAD	GBM
ENSG00000223552	ENSG00000166002	SMCO4	DLBC,ESCA,GBM,LAML,MESO,PAAD	GBM
ENSG00000223552	ENSG00000166710	B2M	DLBC,GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000167208	SNX20	DLBC,GBM,KIRC,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000167613	LAIR1	DLBC,GBM,KIRC,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000167850	CD300C	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000169403	PTAFR	DLBC,GBM,KIRC,LAML,MESO,PAAD	GBM,KIRC
ENSG00000223552	ENSG00000171051	FPR1	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000171860	C3AR1	DLBC,GBM,KIRC,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000172243	CLEC7A	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000172322	CLEC12A	DLBC,KIRC,LAML,LUAD,MESO	KIRC
ENSG00000223552	ENSG00000173369	C1QB	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000173372	C1QA	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000174125	TLR1	DLBC,GBM,KIRC,LAML,MESO	GBM
ENSG00000223552	ENSG00000175489	LRRC25	DLBC,GBM,LAML,LUAD,MESO	GBM
ENSG00000223552	ENSG00000181467	RAP2B	DLBC,GBM,KIRC,LAML,MESO	KIRC
ENSG00000223552	ENSG00000181804	SLC9A9	DLBC,GBM,KIRC,LAML,MESO	KIRC
ENSG00000223552	ENSG00000184060	ADAP2	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000184730	APOBR	DLBC,ESCA,KIRC,MESO,STAD	KIRC
ENSG00000223552	ENSG00000186818	LILRB4	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000198951	NAGA	DLBC,GBM,KIRC,LAML,MESO	GBM
ENSG00000223552	ENSG00000203747	FCGR3A	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000235568	NFAM1	DLBC,GBM,KIRC,LAML,MESO	GBM,KIRC
ENSG00000223552	ENSG00000110057	UNC93B1	ESCA,GBM,KIRC,LAML,STAD	GBM
ENSG00000223552	ENSG00000179163	FUCA1	ESCA,GBM,LAML,MESO,PAAD	GBM
ENSG00000223552	ENSG00000140379	BCL2A1	GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC
ENSG00000223552	ENSG00000162511	LAPTM5	GBM,KIRC,LAML,LUAD,MESO	GBM,KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000223552.1	ENST00000451485.1	99	657	956

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential