 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | GLI4,PBX2,RBM39,IRF3,CIRBP,MZF1,NRF1,ZNF2,ZXDC,DMTF1,TBP,THOC1,LSM3,LARP7,CHTOP,TFAP4,LSM5,ZBED5,ZZZ3,CENPT,TTC14,PCBP2,SP100,ZNF44,DBP,LSM4,RBMX,RBM4B,CSTF3,RNPS1,RBM14,ERAL1,ZBTB3,CWC15,NFYC,NFIA,CPSF4,RBM15,PPIE,RBM43,MBD2,SF3B6,NELFE,USF1,CXXC1,ZNF34,THAP6,DDX17,CSTF1,E2F6,ZNF22,PHF1,THYN1,TGIF2,DDX49,TTF1,NOL9,THOC6,DZIP3,ILF2,NIP7,ZNF48,REXO4,TIGD1,RBM10,MBD4,THAP3,UNC50,APEX1,SRSF2,MYNN,PREB,NSUN6,ZNF18,EIF2D,C1D,RBM6,HMGN3,CPSF3,ZNF14,RBM48,E2F1,XPO1,RBM5,THAP8,LSM2,NFYB,ZNF84,PIN1,RXRB,TRA2A,RBM8A,NAIF1,XPA,NR2C1,THOC7,TFDP2,RALY,SRSF7 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | GMEB1,ZNF48,TBP,DDX17,MZF1,THAP6,LSM2,ZNF18,E4F1,RBM5,E2F6,CXXC1,ATF1,ZNF14,THAP7,RNPS1,SRSF5,TFAP4,RCAN3,RBMX,RBM10,MYNN,RBM6,EIF2D,NFIA,RBM39,PCBP2,TRA2A,THAP3,CIRBP,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000218510 | ENST00000404210 | exon_skip_74009 | chr11:64773429-64773505 | -11.66 | -0.1619 | SF1 | ENST00000377390 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_1668 | ENSG00000218510.5 | chr1 | 22026948 | + | lincRNA | LINC00339 | ENST00000434233.1 | lincRNA | LINC00339-004 |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000218510 | LncEditing_1668 | STAD | chr1_22026948_+ | 4.881170e+00 | 4.127282e+00 | 4.131635e+00 | 1.979098e+00 | 4.780500e-02 | 4.783841e-02 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000112592 | TBP | 5 | CHOL,KICH,KIRP,LIHC,THCA | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000204392 | LSM2 | 5 | CHOL,ESCA,HNSC,KICH,LIHC | | ENSG00000218510 | ENSG00000154832 | CXXC1 | ENSG00000204392 | LSM2 | 5 | CHOL,KICH,LGG,LIHC,PRAD | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000167967 | E4F1 | 5 | CHOL,HNSC,KIRP,LIHC,THCA | | ENSG00000218510 | ENSG00000147789 | ZNF7 | ENSG00000167967 | E4F1 | 5 | CHOL,HNSC,KIRP,LIHC,THCA | | ENSG00000218510 | ENSG00000154832 | CXXC1 | ENSG00000167967 | E4F1 | 5 | CHOL,KIRP,LIHC,MESO,PRAD | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000003756 | RBM5 | 6 | CHOL,HNSC,KICH,KIRP,LIHC,THCA | | ENSG00000218510 | ENSG00000147789 | ZNF7 | ENSG00000003756 | RBM5 | 5 | CHOL,HNSC,KIRP,LIHC,THCA | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000154832 | CXXC1 | 5 | CHOL,KICH,KIRP,LIHC,THCA | | ENSG00000218510 | ENSG00000167967 | E4F1 | ENSG00000154832 | CXXC1 | 5 | CHOL,KIRP,LIHC,MESO,PRAD | | ENSG00000218510 | ENSG00000154832 | CXXC1 | ENSG00000184436 | THAP7 | 5 | CHOL,KIRP,LIHC,MESO,PRAD | | ENSG00000218510 | ENSG00000167967 | E4F1 | ENSG00000184436 | THAP7 | 6 | CHOL,HNSC,KIRP,LIHC,MESO,PRAD | | ENSG00000218510 | ENSG00000167967 | E4F1 | ENSG00000182872 | RBM10 | 5 | CHOL,HNSC,LIHC,MESO,PRAD | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000004534 | RBM6 | 5 | CHOL,HNSC,KICH,KIRP,THCA | | ENSG00000218510 | ENSG00000196378 | ZNF34 | ENSG00000004534 | RBM6 | 5 | CHOL,HNSC,KICH,KIRP,THCA | | ENSG00000218510 | ENSG00000196378 | ZNF34 | ENSG00000131051 | RBM39 | 5 | CHOL,HNSC,KICH,KIRP,THCA | | ENSG00000218510 | ENSG00000065029 | ZNF76 | ENSG00000164548 | TRA2A | 5 | CHOL,HNSC,KICH,KIRP,THCA | | ENSG00000218510 | ENSG00000154832 | CXXC1 | ENSG00000041988 | THAP3 | 8 | BRCA,CHOL,KICH,KIRP,LGG,LIHC,MESO,PRAD | | ENSG00000218510 | ENSG00000167967 | E4F1 | ENSG00000041988 | THAP3 | 6 | CHOL,HNSC,KIRP,LIHC,MESO,PRAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000218510.5 | ENST00000434233.1 | 94 | 151 | 435 | | ENSG00000218510.5 | ENST00000420503.1 | 73 | 629 | 408 | | ENSG00000218510.5 | ENST00000416769.1 | 94 | 58 | 342 | | ENSG00000218510.5 | ENST00000452322.1 | 82 | 548 | 796 | | ENSG00000218510.5 | ENST00000404210.4 | 44 | 273 | 139 |
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