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lncRNA: ENSG00000215908

Summary for CROCCP2

Gene summary

Gene information	Ensembl ID	ENSG00000215908
	Gene symbol	CROCCP2
	Gene name
	HGNC
	Entrez ID	84809
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for CROCCP2

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000215908	1.068872e+03	-1.835736e+00	2.198480e-01	-8.350025e+00	6.820000e-17	2.230000e-15	DOWN	CHOL

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000215908	3.418145e-01	2.345773e-03	ACC	1.042566e-02
ENSG00000215908	-4.244830e-01	3.386500e-05	KICH	6.468054e-05

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lncRNA-Protein interaction for CROCCP2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000118058	KMT2A	68.24	95.5715	Q03164	TF,Epi	NA
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000089094	KDM2B	59.57	92.2035	Q8NHM5	TF,Epi	NA
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000123636	BAZ2B	107.49	92.2959	Q9UIF8	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000123636	BAZ2B	107.49	92.3404	Q9UIF8	TF,Epi	NA
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000167967	E4F1	88.01	91.3907	Q66K89	TF	NA
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000118058	KMT2A	68.24	95.5529	Q03164	TF,Epi	NA
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000089094	KDM2B	59.57	92.3853	Q8NHM5	TF,Epi	NA
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000065029	ZNF76	32.27	90.749	P36508	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000215908	ENST00000362058	CROCCP2	ENSG00000167978	SRRM2	24.17	96.7911	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for CROCCP2

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CROCCP2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000215908	ENST00000362058	exon_skip_382458	chr3:38131595-38131638	-9.52	-0.2380	ACAA1	ENST00000333167	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_41813	chr10:68337857-68337996	-20.47	-0.1878	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_133217	chr16:8635038-8635079	-11.52	-0.6063	METTL22	ENST00000381920	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_309204	chr19:49181348-49181461	-22.73	-0.2048	TRPM4	ENST00000252826	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_340759	chr2:85552415-85552567	-20.43	-0.1983	GGCX	ENST00000233838	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_370518	chr22:50247691-50247776	-18.37	-0.2386	HDAC10	ENST00000216271	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_374551	chr3:50100531-50100605	-15.97	-0.3472	RBM5	ENST00000347869	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_499567	chr9:128325142-128325239	-18.54	-0.1931	COQ4	ENST00000300452	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_2106	chr1:17648553-17648675	-22.79	-0.1948	ARHGEF10L	ENST00000361221	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_8541	chr1:109657589-109657671	-21.24	-0.3600	GSTM4	ENST00000369836	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_38175	chr1:234398381-234398553	-17.93	-0.1135	TARBP1	ENST00000040877	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_53559	chr10:101793912-101793998	-13.81	-0.1841	OGA	ENST00000361464	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_108095	chr14:73955450-73955509	-13.26	-0.3014	COQ6	ENST00000334571	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_111863	chr14:23565815-23565892	-23.52	-0.3459	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_114365	chr14:74290026-74290118	-17.86	-0.1941	ABCD4	ENST00000356924	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_127618	chr15:58890280-58890461	-21.72	-0.1438	SLTM	ENST00000380516	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_139933	chr16:90035632-90035687	-12.70	-0.3848	GAS8	ENST00000268699	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_290158	chr17:42953723-42953778	-12.14	-0.2478	AARSD1	ENST00000427569	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_326885	chr2:74490024-74490127	-24.88	-0.2619	TTC31	ENST00000233623	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_327748	chr2:95410863-95411026	-25.74	-0.1693	FAHD2A	ENST00000233379,ENST00000447036	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_353131	chr20:58669290-58669453	-30.34	-0.2152	STX16	ENST00000371141	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_370525	chr22:50250426-50250523	-22.70	-0.2389	HDAC10	ENST00000216271	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_374497	chr3:49999439-49999513	-13.98	-0.2589	RBM6	ENST00000266022	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_442657	chr5:74730259-74730398	-16.63	-0.1569	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_444499	chr5:138164086-138164133	-10.78	-0.2629	BRD8	ENST00000254900	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_470226	chr7:103307595-103307708	-15.51	-0.2041	PMPCB	ENST00000249269	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_494079	chr8:144099080-144099205	-29.42	-0.2627	SHARPIN	ENST00000398712	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_511212	chrX:71555189-71555385	-22.51	-0.1185	OGT	ENST00000373719	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_13857	chr1:168038370-168038488	-18.43	-0.2925	DCAF6	ENST00000312263	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_145399	chr16:67664995-67665168	-27.48	-0.1676	ENKD1	ENST00000243878	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_319223	chr19:43526200-43526349	-26.88	-0.2185	ETHE1	ENST00000292147	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_377198	chr3:123130479-123130616	-25.99	-0.1969	PDIA5	ENST00000316218	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_327433	chr2:86125794-86125880	-10.05	-0.1396	PTCD3	ENST00000254630	Frame-shift
ENSG00000215908	ENST00000362058	exon_skip_5818	chr1:45568484-45568684	-30.61	-0.1603	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CROCCP2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_1324	ENSG00000215908.6	chr1	16620888	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1331	ENSG00000215908.6	chr1	16620911	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1337	ENSG00000215908.6	chr1	16620964	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1338	ENSG00000215908.6	chr1	16620974	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1340	ENSG00000215908.6	chr1	16620990	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1351	ENSG00000215908.6	chr1	16621026	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1353	ENSG00000215908.6	chr1	16621030	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1354	ENSG00000215908.6	chr1	16621035	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1375	ENSG00000215908.6	chr1	16622539	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1378	ENSG00000215908.6	chr1	16622574	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1380	ENSG00000215908.6	chr1	16622580	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1389	ENSG00000215908.6	chr1	16622683	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1416	ENSG00000215908.6	chr1	16624724	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1428	ENSG00000215908.6	chr1	16624820	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1430	ENSG00000215908.6	chr1	16624830	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1449	ENSG00000215908.6	chr1	16625491	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003
LncEditing_1456	ENSG00000215908.6	chr1	16625572	-	lincRNA	CROCCP2	ENST00000412962.1	lincRNA	CROCCP2-003

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000215908	LncEditing_1340	UCS	chr1_16620990_-	8.229753e+00	6.285452e+00	2.571801e+00	2.198724e+00	2.789757e-02	3.072914e-02	UP
ENSG00000215908	LncEditing_1331	GBM	chr1_16620911_-	9.651019e+00	5.631685e+00	1.286811e+00	5.274607e+00	1.330410e-07	2.998054e-07	UP
ENSG00000215908	LncEditing_1337	GBM	chr1_16620964_-	8.773610e+00	5.742377e+00	1.635263e+00	4.809515e+00	1.512968e-06	2.833312e-06	UP
ENSG00000215908	LncEditing_1338	GBM	chr1_16620974_-	8.822084e+00	5.407295e+00	1.416004e+00	6.227192e+00	4.748701e-10	1.803615e-09	UP
ENSG00000215908	LncEditing_1340	GBM	chr1_16620990_-	8.808260e+00	5.385238e+00	1.408754e+00	5.927116e+00	3.083008e-09	9.506838e-09	UP
ENSG00000215908	LncEditing_1351	GBM	chr1_16621026_-	8.469883e+00	5.097209e+00	1.364937e+00	7.027615e+00	2.100931e-12	1.517547e-11	UP
ENSG00000215908	LncEditing_1354	GBM	chr1_16621035_-	8.304329e+00	5.002042e+00	1.367341e+00	7.232400e+00	4.745316e-13	4.265512e-12	UP
ENSG00000215908	LncEditing_1375	GBM	chr1_16622539_-	9.552464e+00	5.724555e+00	1.353712e+00	4.757750e+00	1.957627e-06	3.614475e-06	UP
ENSG00000215908	LncEditing_1380	GBM	chr1_16622580_-	8.344262e+00	5.498106e+00	1.661544e+00	5.313396e+00	1.076009e-07	2.480033e-07	UP
ENSG00000215908	LncEditing_1416	GBM	chr1_16624724_-	1.033596e+01	5.561655e+00	1.118461e+00	5.985705e+00	2.154548e-09	6.972117e-09	UP
ENSG00000215908	LncEditing_1338	LAML	chr1_16620974_-	1.407230e+01	1.186709e+01	4.066832e+00	2.105298e+00	3.526538e-02	3.602378e-02	UP
ENSG00000215908	LncEditing_1354	LAML	chr1_16621035_-	1.380209e+01	1.164994e+01	4.088922e+00	2.407299e+00	1.607100e-02	1.730400e-02	UP
ENSG00000215908	LncEditing_1380	LAML	chr1_16622580_-	1.323136e+01	1.114586e+01	4.041167e+00	2.127015e+00	3.341888e-02	3.427933e-02	UP
ENSG00000215908	LncEditing_1416	LAML	chr1_16624724_-	1.769184e+01	1.172731e+01	1.685738e+00	3.726324e+00	1.942929e-04	2.896737e-04	UP
ENSG00000215908	LncEditing_1430	LAML	chr1_16624830_-	1.926917e+01	1.137930e+01	1.315993e+00	4.789308e+00	1.673571e-06	3.751107e-06	UP
ENSG00000215908	LncEditing_1449	LAML	chr1_16625491_-	1.766261e+01	1.159673e+01	1.647500e+00	3.784358e+00	1.541061e-04	2.335227e-04	UP
ENSG00000215908	LncEditing_1456	CHOL	chr1_16625572_-	6.693292e+00	4.167515e+00	1.462997e+00	2.146364e+00	3.184393e-02	3.598507e-02	UP
ENSG00000215908	LncEditing_1331	OV	chr1_16620911_-	5.170345e+00	2.974567e+00	1.253791e+00	1.061907e+01	2.429681e-26	1.925941e-25	UP
ENSG00000215908	LncEditing_1337	OV	chr1_16620964_-	5.157379e+00	3.768264e+00	2.208783e+00	4.729220e+00	2.253836e-06	2.878337e-06	UP
ENSG00000215908	LncEditing_1338	OV	chr1_16620974_-	5.167782e+00	3.295958e+00	1.541195e+00	8.765852e+00	1.853694e-18	7.315327e-18	UP
ENSG00000215908	LncEditing_1340	OV	chr1_16620990_-	5.373248e+00	3.458331e+00	1.573023e+00	8.032011e+00	9.588811e-16	2.839585e-15	UP
ENSG00000215908	LncEditing_1351	OV	chr1_16621026_-	5.484767e+00	3.007487e+00	1.153573e+00	1.115633e+01	6.668773e-29	7.088944e-28	UP
ENSG00000215908	LncEditing_1353	OV	chr1_16621030_-	5.992980e+00	3.660856e+00	1.406287e+00	6.623399e+00	3.510328e-11	6.668897e-11	UP
ENSG00000215908	LncEditing_1354	OV	chr1_16621035_-	5.315975e+00	2.737082e+00	1.044173e+00	1.145781e+01	2.148705e-30	2.884284e-29	UP
ENSG00000215908	LncEditing_1378	OV	chr1_16622574_-	5.736156e+00	3.738558e+00	1.619165e+00	5.418674e+00	6.004280e-08	8.533131e-08	UP
ENSG00000215908	LncEditing_1380	OV	chr1_16622580_-	5.307676e+00	3.115249e+00	1.300842e+00	9.749838e+00	1.847632e-22	1.035913e-21	UP
ENSG00000215908	LncEditing_1389	OV	chr1_16622683_-	5.449078e+00	3.649488e+00	1.729152e+00	6.832979e+00	8.316900e-12	1.673389e-11	UP
ENSG00000215908	LncEditing_1416	OV	chr1_16624724_-	6.307772e+00	3.576100e+00	1.221384e+00	7.864262e+00	3.712797e-15	1.056940e-14	UP
ENSG00000215908	LncEditing_1331	STAD	chr1_16620911_-	4.866017e+00	3.240258e+00	1.704644e+00	7.097451e+00	1.270791e-12	2.472517e-12	UP
ENSG00000215908	LncEditing_1338	STAD	chr1_16620974_-	5.141681e+00	3.296714e+00	1.559548e+00	6.734375e+00	1.646356e-11	2.935968e-11	UP
ENSG00000215908	LncEditing_1340	STAD	chr1_16620990_-	4.851616e+00	3.415730e+00	1.975226e+00	5.885626e+00	3.965509e-09	5.812291e-09	UP
ENSG00000215908	LncEditing_1351	STAD	chr1_16621026_-	4.761983e+00	3.197785e+00	1.740676e+00	7.165344e+00	7.759145e-13	1.556176e-12	UP
ENSG00000215908	LncEditing_1353	STAD	chr1_16621030_-	4.448905e+00	3.566684e+00	3.136105e+00	3.049518e+00	2.292087e-03	2.426051e-03	UP
ENSG00000215908	LncEditing_1354	STAD	chr1_16621035_-	4.722085e+00	2.999200e+00	1.527075e+00	8.391474e+00	4.800862e-17	1.456533e-16	UP
ENSG00000215908	LncEditing_1380	STAD	chr1_16622580_-	4.875422e+00	3.089195e+00	1.519073e+00	8.291604e+00	1.117318e-16	3.245435e-16	UP
ENSG00000215908	LncEditing_1389	STAD	chr1_16622683_-	4.438921e+00	3.532710e+00	3.035512e+00	3.971252e+00	7.149592e-05	8.177488e-05	UP
ENSG00000215908	LncEditing_1324	ESCA	chr1_16620888_-	5.012652e+00	3.754177e+00	2.397636e+00	2.296977e+00	2.162010e-02	2.223539e-02	UP
ENSG00000215908	LncEditing_1331	ESCA	chr1_16620911_-	4.761696e+00	3.164361e+00	1.696176e+00	5.356183e+00	8.499846e-08	1.596606e-07	UP
ENSG00000215908	LncEditing_1337	ESCA	chr1_16620964_-	4.420441e+00	3.788721e+00	4.494796e+00	2.325725e+00	2.003321e-02	2.065402e-02	UP
ENSG00000215908	LncEditing_1338	ESCA	chr1_16620974_-	4.614897e+00	3.572182e+00	2.706414e+00	3.317599e+00	9.079471e-04	1.039354e-03	UP
ENSG00000215908	LncEditing_1340	ESCA	chr1_16620990_-	4.935624e+00	3.358597e+00	1.800590e+00	5.257612e+00	1.459383e-07	2.648370e-07	UP
ENSG00000215908	LncEditing_1351	ESCA	chr1_16621026_-	4.694039e+00	3.113490e+00	1.688342e+00	5.430351e+00	5.624327e-08	1.086506e-07	UP
ENSG00000215908	LncEditing_1353	ESCA	chr1_16621030_-	4.706474e+00	3.731515e+00	2.986098e+00	2.267301e+00	2.337183e-02	2.397815e-02	UP
ENSG00000215908	LncEditing_1354	ESCA	chr1_16621035_-	4.572674e+00	2.740275e+00	1.353698e+00	6.437231e+00	1.216728e-10	3.881678e-10	UP
ENSG00000215908	LncEditing_1375	ESCA	chr1_16622539_-	4.654359e+00	3.786916e+00	3.360678e+00	2.841004e+00	4.497174e-03	4.873877e-03	UP
ENSG00000215908	LncEditing_1378	ESCA	chr1_16622574_-	4.854580e+00	3.684560e+00	2.513484e+00	2.627893e+00	8.591560e-03	9.108705e-03	UP
ENSG00000215908	LncEditing_1380	ESCA	chr1_16622580_-	4.421449e+00	3.325994e+00	2.434668e+00	3.921893e+00	8.785602e-05	1.107980e-04	UP
ENSG00000215908	LncEditing_1389	ESCA	chr1_16622683_-	5.142426e+00	3.549956e+00	1.870389e+00	4.674035e+00	2.953393e-06	4.472489e-06	UP
ENSG00000215908	LncEditing_1416	ESCA	chr1_16624724_-	5.829423e+00	3.506925e+00	1.363983e+00	5.255914e+00	1.472908e-07	2.670602e-07	UP
ENSG00000215908	LncEditing_1428	ESCA	chr1_16624820_-	6.611978e+00	3.596148e+00	1.138136e+00	5.389291e+00	7.073619e-08	1.349072e-07	UP
ENSG00000215908	LncEditing_1456	ESCA	chr1_16625572_-	5.556375e+00	3.673134e+00	1.674670e+00	4.177313e+00	2.949727e-05	3.927972e-05	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000215908	LncEditing_1340	-8.146677e-01	4.833920e-02	4.930599e-02
ENSG00000215908	LncEditing_1331	-3.134627e-01	3.709749e-05	2.175718e-04
ENSG00000215908	LncEditing_1337	-4.271672e-01	2.461323e-03	4.077153e-03
ENSG00000215908	LncEditing_1338	-4.037958e-01	1.730213e-06	2.639287e-05
ENSG00000215908	LncEditing_1340	-4.145275e-01	2.682839e-05	1.848178e-04
ENSG00000215908	LncEditing_1389	-3.794374e-01	2.353937e-03	3.975130e-03
ENSG00000215908	LncEditing_1331	-3.441399e-01	5.574719e-04	1.338691e-03
ENSG00000215908	LncEditing_1340	-4.018755e-01	9.962121e-04	2.068605e-03
ENSG00000215908	LncEditing_1351	-3.249884e-01	5.010901e-04	1.245668e-03
ENSG00000215908	LncEditing_1353	-5.480193e-01	2.517282e-04	7.712495e-04
ENSG00000215908	LncEditing_1337	-4.626555e-01	1.509998e-02	2.432163e-02
ENSG00000215908	LncEditing_1340	-3.851221e-01	3.690849e-03	1.140167e-02
ENSG00000215908	LncEditing_1389	-5.506295e-01	6.093062e-04	4.844484e-03

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000215908.6	ENST00000412962.1	60	15	197
ENSG00000215908.6	ENST00000362058.2	235	719	12

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential