 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TMEM161B,NUP155,STRAP,STRBP,IRAK4,SDHA,AQR,SLC25A5,MAN2A1,HCCS,CAAP1,VDAC1,SPRING1,CBLL1,SLC25A40,LPCAT3,SLC25A3,IDH3A,EPDR1,MRPS30,CERT1,NDUFA12,YAF2,CIAO2A,DLAT,CYCS,NNT | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000215246 | ENSG00000004961 | HCCS | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000005022 | SLC25A5 | CHOL,KICH,KIRC,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000015153 | YAF2 | CHOL,KICH,KIRC,KIRP,THYM | KICH | | | ENSG00000215246 | ENSG00000075303 | SLC25A40 | CHOL,KICH,KIRC,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000075415 | SLC25A3 | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000086289 | EPDR1 | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000111412 | SPRING1 | CHOL,KICH,KIRP,LAML,UVM | CHOL | | | ENSG00000215246 | ENSG00000111684 | LPCAT3 | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000112893 | MAN2A1 | CHOL,KICH,KIRC,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000113163 | CERT1 | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000164180 | TMEM161B | CHOL,KICH,KIRC,KIRP,MESO | KICH | | | ENSG00000215246 | ENSG00000165209 | STRBP | CHOL,KICH,KIRC,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000166411 | IDH3A | CHOL,KICH,KIRC,KIRP,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000166797 | CIAO2A | CHOL,KICH,KIRC,KIRP,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000172115 | CYCS | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000184752 | NDUFA12 | CHOL,KICH,KIRC,KIRP,THYM | KICH | | | ENSG00000215246 | ENSG00000213585 | VDAC1 | CHOL,KICH,KIRC,KIRP,UVM | KICH | | | ENSG00000215246 | ENSG00000073578 | SDHA | KICH,KIRP,MESO,THYM,UVM | KICH | | | ENSG00000215246 | ENSG00000198001 | IRAK4 | KICH,KIRC,MESO,THYM,UVM | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000215246.5 | ENST00000399869.1 | 85 | 256 | 2 |
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