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lncRNA: ENSG00000215068

Summary for AC025171.1

Gene summary

Gene information	Ensembl ID	ENSG00000215068
	Gene symbol	AC025171.1
	Gene name
	HGNC
	Entrez ID	153684
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for AC025171.1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000215068	1.784817e+02	1.444025e+00	9.731020e-02	1.483940e+01	8.150000e-50	1.960000e-48	UP	KIRC
ENSG00000215068	1.940249e+02	1.874626e+00	1.554670e-01	1.205803e+01	1.760000e-33	1.580000e-31	UP	KIRP

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000215068	3.561238e-01	6.245557e-06	ESCA	6.992850e-04

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lncRNA-Protein interaction for AC025171.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000215068	ENST00000508913	AC025171.1	ENSG00000118058	KMT2A	72.95	93.9331	Q03164	TF,Epi	NA
ENSG00000215068	ENST00000399543	AC025171.1	ENSG00000117000	RLF	56.5	94.288	Q13129	TF	NA
ENSG00000215068	ENST00000508913	AC025171.1	ENSG00000117000	RLF	47.16	90.5195	Q13129	TF	NA
ENSG00000215068	ENST00000508913	AC025171.1	ENSG00000065029	ZNF76	29.47	90.2257	P36508	TF	NA
ENSG00000215068	ENST00000399543	AC025171.1	ENSG00000065029	ZNF76	24.41	91.3721	P36508	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000215068	ENST00000399543	AC025171.1	ENSG00000135870	RC3H1	54.7	91.1785	Q5TC82	RBP	NA

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lncRNA-DNA interaction for AC025171.1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

RPAP2,ARHGEF1,SPAG9,VAMP1,HELQ,CPLANE1,ERI2,OXNAD1,MFSD8,DNAJC27,NUP155,MZF1,TTC31,MAPK8IP3,SUGP2,N4BP2L2,MKNK1,SLF2,L3HYPDH,ANKRD44,DMTF1,FAM193A,UNKL,PIGG,LMBR1L,UBE4A,VPS39,KMT2B,IRAK4,ZFP14,CENATAC,WDR5B,KLHL28,MSANTD2,TUBGCP6,CCDC14,SMARCC2,MYO9A,ARAP2,CLK4,ZBED5,INPP5B,SETD2,TTC14,KNTC1,CREB1,KDM5A,PPIP5K2,SCYL3,CLCN6,OGT,C20orf194,MYEF2,ARID4B,ASH1L,POLG2,TUT4,DNAJC16,METTL17,FAN1,CPSF7,BBIP1,THOC2,CTC1,CLK1,ATXN7,RABL2A,RPAIN,OFD1,PEAK1,FBXO38,RFX7,FCHSD1,IFT172,CC2D1B,PURA,MBD5,MIS12,RSRC2,NPAT,INO80E,NAPB,NAA25,NEMP1,EML4,SETD5,ZFP62,MIS18BP1,GON4L,SOCS4,DOCK10,C9orf72,ORMDL1,CHD9,BRAF,YTHDC1,AGO3,ORC2,SSBP2,PHC3,TECPR1,PASK,LRRC37B,ZZEF1,DHX35,ABHD16A,SUPT20H,CCDC191,RNF111,NR2C2,PAN2,LRTOMT,SLFN13,GIGYF1,KHNYN,PKN2,ATG2B,ZFC3H1,ARHGAP33,MBTD1,DMAC2L,N4BP2L1,SP3,DNASE1,SEPSECS,DDX42,HIPK1,TTC3,CEP192,POLM,ZNF69,DNAJC24,ATF7IP,FMNL3,ZFP3,SLF1,MARCHF6,LTN1,HERC4,IQCC,ATM,THADA,FANCL,TTC17,CDK13,LENG8,NICN1,CEP57,ARIH2,SPICE1,PPWD1,RELCH,VEZF1,MLLT6,SLC30A7,ATG12,PIBF1,AHI1,ZNF70,CLASP1,INO80D,NHLRC3,ASTE1,CRLF3,PHF7,CASP2,CAPN10,KRIT1,AP1G2,ZXDA,FAM111A,DNAJC21,ANKMY1,RIPK3,UBR1,CHD8,PHF12,KIAA1143,DENND6A,RALGPS2,ZMYM5,C2CD3,UBR4,TAMM41,RC3H1,CBLB,ZNF44,SLC12A6,SMG1,PHC1,BCLAF3,MTRR,PPM1B,PUS7L,IFT80,NEK9,EP400,LIN54,UBN2,TRMT2B,KIAA0586,LRIG2,ABHD18,SMCHD1,SLX4,CREBRF,MECP2,SMYD4,IKBKB,ACIN1,ZNF41,DGKE,ENOSF1,DZIP3,TAOK2,ANKRD49,PAXBP1,SLC38A9,GANC,WDR7,COA1,FNBP4,KMT2D,SYNRG,BOD1L1,RSRP1,TMF1,SSH2,MLLT10,CHD2,GOLGA4,MED23,CLEC2D,ATG14,GOLGB1,NBPF15,TUBGCP3,HEMK1,LINS1,HERC1,BTBD7,ANKRD26,SCAF11,C2orf68,GK5,RBM6,TRMT13,GDAP2,TTBK2,PDS5B,TP53BP1,ARID4A,CCDC142,SYNE2,CBX5,BTN2A2,EPM2AIP1,SYNGAP1,CHD1,MAML1,WDR27,HECTD4,EXOC7,ANKFY1,KHDC4,TPR,EP400P1,PNISR,TMEM63A,AMT,CEPT1,UBE3B,CARD8,DMXL2,LMLN,ATAD2B,ZNF10,FAM126B,ATAT1,PLCG1,ESCO1,RALGAPA1,CEP120,TMX3,KLF12,ANGEL2,MDM1,POC5,KDM3B,FAM214A,N4BP2,MYSM1,MED13L,POLH,CEP57L1,CEP250,ARID2,SMG6,STAM2,CEP95,USP4,TBRG1,SLX4IP,ZFAND4,PPP1R12A,KLHDC1,PBRM1,CCNL2,EFCAB7,PRR14L,CLK3,RNPC3,BARD1,ANKRD10,TENT4A,INCA1,LRCH3,SON,DOP1A,KANSL3,KMT2C,PHF8,MPHOSPH9,CCNT2,OSBPL7,EDC4,NDE1,ZNF91,CHD6,RAD1,BRWD1,NIN,RBM26,PCSK7,PURB,ZBTB3,TUBGCP5,RBM25,SLC7A6OS,TBCK,SP4,KANSL1L,POLI,LNPEP,PRPF39,RESF1,ITSN2,SERTAD2,KIAA0753,SRRM2,HEATR5B,BTN2A1,EPC1,LCOR,GORAB,HEXIM2,FBXL20,CEP44,CENPC,RBM41,PROSER3,ARGLU1,LIG4,CCNL1,ANKRA2,SGSM2,C2orf49,POLK,VMAC,NCOR1,CELF1,TMEM161B,PRKAA1,EPG5,RBM45,PRDM2,TBC1D2B,R3HDM2,QRICH1,RNFT1,TIA1,ZNF83,PPP4R3A,KANSL1,NSUN6,C5orf34,SYNJ1,SNRNP200,ERCC3,SZT2,FAM13B,DDX5,USP48,PARP8,HELZ,STK4,CCL28,ELF2,LYST,CRAMP1,LUC7L,ZNF43,PNN,BRD8,UBE2V1,DGKD,BBS4,KMT2A,TPP2,REV1,SLC10A7,NEURL4,NR2C1,ADAT1,NRIP2,DYNC1LI2,SOS1,RBM33,NOL8,CFAP44,LRCH4,AGAP6,GABPB2,ATXN7L1,ADAMTS10,RBM39,ODF2L,GPATCH8,MDC1,ZCCHC8,KAT7,ZXDC,INTS3,PIGL,ZC3H7A,CSAD,ATRX,TRANK1,MAP3K2,GPATCH2,MAML2,DCAF8,PHYKPL,SF3B1,NHLRC2,RUFY3,ZFYVE26,OGA,ZFP69,PAN3,CEP350,KMT2E,CLASP2,GOLGA1,NUMB,SUPT7L,MORC3,RICTOR,RIPOR2,PEX1,S100PBP,CALCOCO1,DPP8,APAF1,TOGARAM1,FAM76B,POGZ,BRWD3,AKAP10,EXOG,MAP3K12,MBD1,IKZF4,TCEANC2,FUBP1,DCAF5,NF1,WDR20,EZH1,THAP6,KIDINS220,DDX17,NNT,ABL2,SLC7A6,SENP7,CHFR,MTRF1,RAD52,EPB41,DYRK1A,ASXL2,CTDSPL2,MARF1,GOLGA3,INO80,CEP290,TRPM7,SMC6,WSB1,GPALPP1,ERV3-1,PHIP,VPS52,ELK4,KLC1,CNNM3,TRIM52,GPS2,NCBP3,DEPDC5,USF3,CCDC93,CWC25,STK36,TTC32,ZMAT1,GOLGA8B,HP1BP3,ACP6,STRADA,VPS13C,ZFX,NLRC3,DIDO1,LMBRD2,CREBBP,PIKFYVE,DUSP28,PUM2,RBM5,SFMBT1,NKTR,CEP162,ZNF17,SRCAP,TTLL3,CRBN,ZNF84,BAZ2B,CCP110,PARP6,BICRAL,WDR33,TRA2B,FRYL,KATNIP,JMJD1C,ASXL1,DENND4B,SPG11,TEP1,FBXO42,MAN2C1,USPL1,TTC33,WHAMM,PRPF4B,TET2,RABL2B,STK38

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DCAF8,KIDINS220,GTF2H4,DNASE1,KDM5A,MECP2,SMARCC2,RFX7,ZMAT1,WDR60,ORC2,DGCR8,REST,ZFYVE16,KLHL28,CEP250,RAD52,GORAB,PCSK7,FAN1,EFHC1,ITCH,SMG1,ZNF70,ACP6,RAPGEF2,MED12,CTC1,STK38,EPC1,ZSWIM6,FER,CASP8AP2,HEMK1,DDX17,EP400NL,CBL,RBM5,WDR48,NCBP3,ZFX,THOC2,ADAT1,PLEKHH2,COA1,ZNF83,CWC25,KIAA1551,DYNC1LI2,EVL,FBXL20,IFNAR2,USP4,TET2,INTS3,AGO4,PIK3C3,RIF1,CELF1,ENOSF1,ZC3H6,ARID2,NCOR1,FAM179B,HERC4,INO80D,MAPK8IP3,ZC3H11A,BTAF1,TUBGCP3,CCDC66,MZF1,KMT2C,DPP8,VAMP1,PAXBP1,KIAA0907,MLLT10,STRADA,MPHOSPH9,ZNF69,DCAF5,METTL22,ABHD18,LYST,ANKRD26,BBIP1,ENGASE,RALGPS2,CHFR,TLK2,C2orf68,SPICE1,CSAD,GIT2,RALGAPA1,WSB1,ANGEL2,ARAP2,CDK13,MAML2,FAM111A,MFSD8,KIAA0430,RBM41,GTF2I,ZBED6,CCNL1,S100PBP,CEPT1,CHD8,CEP135,ZZEF1,ANKFY1,CPSF7,TMX3,SENP5,FAM65B,SLX4,PAN3,GANC,RBM6,ERCC3,PRKAA1,BTN2A2,MDM4

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for AC025171.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

AP2S1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for AC025171.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000215068	ENSG00000069493	CLEC2D	BRCA,DLBC,KIRC,LUAD,STAD,THYM	KIRC
ENSG00000215068	ENSG00000077044	DGKD	BRCA,DLBC,KIRC,KIRP,THYM	KIRC
ENSG00000215068	ENSG00000109046	WSB1	BRCA,DLBC,KIRC,KIRP,PRAD	KIRC
ENSG00000215068	ENSG00000113240	CLK4	BRCA,DLBC,KIRC,KIRP,LAML,THYM	KIRC
ENSG00000215068	ENSG00000135637	CCDC142	BRCA,CESC,DLBC,KIRC,KIRP,LAML,STAD	KIRC
ENSG00000215068	ENSG00000135905	DOCK10	BRCA,DLBC,KIRC,LUAD,STAD,THYM	KIRC
ENSG00000215068	ENSG00000138834	MAPK8IP3	BRCA,DLBC,KIRC,KIRP,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000139625	MAP3K12	BRCA,DLBC,KIRC,KIRP,LUAD,STAD	KIRC,KIRP
ENSG00000215068	ENSG00000139631	CSAD	BRCA,CESC,DLBC,KIRC,KIRP,LUAD	KIRC
ENSG00000215068	ENSG00000139636	LMBR1L	BRCA,DLBC,KIRC,KIRP,THYM	KIRC
ENSG00000215068	ENSG00000161791	FMNL3	BRCA,DLBC,KIRC,STAD,THYM	KIRC
ENSG00000215068	ENSG00000167615	LENG8	BRCA,CESC,DLBC,KIRC,KIRP,SARC	KIRC
ENSG00000215068	ENSG00000175309	PHYKPL	BRCA,CESC,DLBC,KIRC,KIRP,LAML,STAD,THYM	KIRC
ENSG00000215068	ENSG00000175455	CCDC14	BRCA,CESC,DLBC,KIRC,KIRP,LAML,LUAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000184445	KNTC1	BRCA,CESC,KIRC,KIRP,LUAD,SARC,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000184465	WDR27	BRCA,CESC,DLBC,KIRC,KIRP,LAML	KIRC,KIRP
ENSG00000215068	ENSG00000185158	LRRC37B	BRCA,KIRC,KIRP,LUAD,PRAD,STAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000186166	CENATAC	BRCA,ESCA,KIRC,KIRP,LUAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000204149	AGAP6	BRCA,CESC,DLBC,ESCA,KIRC,KIRP,LAML,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000214021	TTLL3	BRCA,CESC,DLBC,KIRC,KIRP,LAML,LUAD,PRAD,STAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000221978	CCNL2	BRCA,DLBC,KIRC,KIRP,LAML,LUAD	KIRC,KIRP
ENSG00000215068	ENSG00000004777	ARHGAP33	CESC,DLBC,KIRC,KIRP,THYM	KIRC
ENSG00000215068	ENSG00000006025	OSBPL7	CESC,DLBC,KIRC,KIRP,LAML,PRAD,THYM	KIRP
ENSG00000215068	ENSG00000117616	RSRP1	CESC,DLBC,KIRC,KIRP,LAML,LUAD,THYM	KIRC
ENSG00000215068	ENSG00000124508	BTN2A2	CESC,DLBC,KIRC,KIRP,SARC	KIRC
ENSG00000215068	ENSG00000132522	GPS2	CESC,DLBC,KIRC,KIRP,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000151882	CCL28	CESC,ESCA,KIRP,LUAD,PRAD,SARC	KIRP
ENSG00000215068	ENSG00000154760	SLFN13	CESC,DLBC,KIRC,KIRP,LUAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000169592	INO80E	CESC,DLBC,KIRC,KIRP,THYM	KIRC
ENSG00000215068	ENSG00000266338	NBPF15	CESC,DLBC,KIRC,KIRP,LUAD,PRAD,STAD	KIRC
ENSG00000215068	ENSG00000013441	CLK1	DLBC,ESCA,KIRC,KIRP,LUAD,THYM	KIRC
ENSG00000215068	ENSG00000072609	CHFR	DLBC,KIRC,KIRP,PRAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000076928	ARHGEF1	DLBC,KIRC,KIRP,STAD,THYM	KIRC
ENSG00000215068	ENSG00000139597	N4BP2L1	DLBC,KIRC,KIRP,LUAD,SARC,THYM	KIRC
ENSG00000215068	ENSG00000141298	SSH2	DLBC,KIRC,KIRP,LUAD,PRAD,STAD,THYM	KIRP
ENSG00000215068	ENSG00000142303	ADAMTS10	DLBC,KIRC,KIRP,STAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000167984	NLRC3	DLBC,KIRC,LUAD,STAD,THYM	KIRC
ENSG00000215068	ENSG00000197948	FCHSD1	DLBC,KIRC,KIRP,STAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000215252	GOLGA8B	DLBC,KIRC,KIRP,LAML,LUAD,THYM	KIRC,KIRP
ENSG00000215068	ENSG00000256525	POLG2	DLBC,KIRC,KIRP,LAML,LUAD,THYM	KIRC,KIRP

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000134313	KIDINS220	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000213780	GTF2H4	5	CESC,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000169057	MECP2	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000166432	ZMAT1	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000166432	ZMAT1	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000160613	PCSK7	5	BRCA,DLBC,KIRC,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000096093	EFHC1	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000078747	ITCH	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000157106	SMG1	6	DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000157106	SMG1	7	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000187792	ZNF70	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000109756	RAPGEF2	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000184634	MED12	5	DLBC,KIRC,KIRP,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000184634	MED12	5	DLBC,KIRC,KIRP,PRAD,SARC
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000178971	CTC1	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000178971	CTC1	5	BRCA,DLBC,KIRC,KIRP,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000130449	ZSWIM6	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000130449	ZSWIM6	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000151422	FER	5	KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000151422	FER	6	BRCA,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000100201	DDX17	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000117000	RLF	ENSG00000100201	DDX17	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000100201	DDX17	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000003756	RBM5	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000074356	NCBP3	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000005889	ZFX	5	DLBC,KIRC,KIRP,LUAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000005889	ZFX	5	DLBC,KIRC,KIRP,LUAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000125676	THOC2	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000125676	THOC2	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000174718	RESF1	5	BRCA,DLBC,KIRC,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000135720	DYNC1LI2	5	DLBC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000135720	DYNC1LI2	5	DLBC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000108306	FBXL20	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000108306	FBXL20	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000168769	TET2	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000143624	INTS3	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000143624	INTS3	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000134698	AGO4	5	CESC,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000134698	AGO4	6	DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000134698	AGO4	7	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000078142	PIK3C3	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000078142	PIK3C3	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000080345	RIF1	5	KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000080345	RIF1	5	KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000149187	CELF1	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000188177	ZC3H6	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000189079	ARID2	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000189079	ARID2	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000141027	NCOR1	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000198718	TOGARAM1	5	BRCA,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000114933	INO80D	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000114933	INO80D	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000058673	ZC3H11A	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000058673	ZC3H11A	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000095564	BTAF1	5	BRCA,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000180376	CCDC66	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000099326	MZF1	5	CESC,DLBC,KIRC,KIRP,LAML
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000074603	DPP8	5	BRCA,DLBC,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000159086	PAXBP1	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000159086	PAXBP1	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000078403	MLLT10	5	BRCA,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000139990	DCAF5	5	BRCA,DLBC,KIRC,KIRP,PRAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000164074	ABHD18	5	CESC,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000164074	ABHD18	6	DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000164074	ABHD18	7	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000107890	ANKRD26	5	BRCA,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000163611	SPICE1	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000163611	SPICE1	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000139436	GIT2	5	BRCA,DLBC,KIRC,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000174373	RALGAPA1	5	BRCA,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000174606	ANGEL2	5	BRCA,DLBC,KIRC,KIRP,LUAD
ENSG00000215068	ENSG00000065029	ZNF76	ENSG00000166801	FAM111A	5	CESC,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000166801	FAM111A	5	BRCA,DLBC,KIRC,KIRP,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000164073	MFSD8	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000164073	MFSD8	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000166783	MARF1	5	DLBC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000166783	MARF1	6	BRCA,DLBC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000089682	RBM41	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000089682	RBM41	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000263001	GTF2I	5	BRCA,DLBC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000257315	ZBED6	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000163660	CCNL1	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000116497	S100PBP	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000116497	S100PBP	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000134255	CEPT1	5	BRCA,DLBC,KIRC,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000100888	CHD8	5	BRCA,DLBC,KIRP,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000074755	ZZEF1	6	DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000074755	ZZEF1	7	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000119231	SENP5	5	BRCA,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000117000	RLF	ENSG00000152520	PAN3	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000152520	PAN3	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000214013	GANC	6	BRCA,KIRC,KIRP,LUAD,PRAD,SARC
ENSG00000215068	ENSG00000117000	RLF	ENSG00000198625	MDM4	5	DLBC,KIRC,KIRP,LUAD,PRAD
ENSG00000215068	ENSG00000118058	KMT2A	ENSG00000198625	MDM4	6	BRCA,DLBC,KIRC,KIRP,LUAD,PRAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000215068.6	ENST00000451894.5	162	159	647
ENSG00000215068.6	ENST00000505541.1	169	1135	626
ENSG00000215068.6	ENST00000399543.1	85	400	143
ENSG00000215068.6	ENST00000508913.4	213	11	652
ENSG00000215068.6	ENST00000515108.1	204	1260	1874

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential