 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RFX7,SON,SP2,PUM1,MEX3B,TTF1,KLF12,SART3,DZIP3,MEX3A,SRCAP,KAT7,SUGP2,DDX42,MAZ,ZFP1,ADNP,ZNF70,NCBP1,TERF2,BAZ2A,KMT2A,ASH1L,SF3A1,ZBED4,SALL2,TFDP2,ADAT1,TET3,TCF20,ZBTB5,ZXDA,ZFR,PATZ1,DDX17,ZNF25 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF70,ZFP1,AGO1,RFX7,GTF2I,DDX46,MAZ,NCBP1,FOXK2,DDX17,BPTF,DHX30,ADAT1,SF3A1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CEBPB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000213888 | ENSG00000118058 | KMT2A | ENSG00000181827 | RFX7 | 5 | GBM,KICH,KIRP,LAML,LGG | | ENSG00000213888 | ENSG00000171634 | BPTF | ENSG00000181827 | RFX7 | 6 | GBM,KICH,KIRP,LAML,LGG,LUSC | | ENSG00000213888 | ENSG00000118058 | KMT2A | ENSG00000263001 | GTF2I | 5 | GBM,KICH,KIRP,LAML,LGG | | ENSG00000213888 | ENSG00000171634 | BPTF | ENSG00000263001 | GTF2I | 6 | GBM,KICH,KIRP,LAML,LGG,LUSC | | ENSG00000213888 | ENSG00000171634 | BPTF | ENSG00000141568 | FOXK2 | 5 | GBM,KICH,LAML,LGG,LUSC | | ENSG00000213888 | ENSG00000118058 | KMT2A | ENSG00000171634 | BPTF | 5 | GBM,KICH,KIRP,LAML,LGG | | ENSG00000213888 | ENSG00000187605 | TET3 | ENSG00000171634 | BPTF | 5 | GBM,KIRP,LGG,LUSC,OV |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000213888.3 | ENST00000504184.3 | 47 | 253 | 396 | | ENSG00000213888.3 | ENST00000614284.1 | 183 | 1176 | 625 |
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