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lncRNA: ENSG00000212978

Summary for AC016747.3

Gene summary

Gene information	Ensembl ID	ENSG00000212978
	Gene symbol	AC016747.3
	Gene name
	HGNC
	Entrez ID	339803
	Gene type	processed_transcript
	Synonyms
	UniProtAcc

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Structure and expression level for AC016747.3

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000212978	4.392977e+02	-1.330587e+00	1.578733e-01	-8.428196e+00	3.510000e-17	4.410000e-16	DOWN	KICH
ENSG00000212978	9.712464e+01	-1.290136e+00	2.789852e-01	-4.624390e+00	3.760000e-06	1.450000e-05	DOWN	UCEC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000212978	4.042731e-01	5.881974e-03	CHOL	7.394230e-03
ENSG00000212978	-5.651591e-01	7.935526e-09	KICH	4.601463e-08
ENSG00000212978	3.550339e-01	2.512757e-13	LIHC	1.859440e-12

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lncRNA-Protein interaction for AC016747.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000036257	CUL3	82.86	95.821	Q13618	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000108094	CUL2	81.84	95.7664	Q13617	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000101126	ADNP	64.03	95.9499	Q9H2P0	TF,Epi	ChIP-seq
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000107625	DDX50	59.95	92.8203	Q9BQ39	RBP,Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000011258	MBTD1	42.59	92.6786	Q05BQ5	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000121067	SPOP	17.13	90.4689	O43791	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000162409	PRKAA2	13.28	94.4229	P54646	Epi	NA
ENSG00000212978	ENST00000417691	AC016747.3	ENSG00000155827	RNF20	62.81	90.5217	Q5VTR2	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000155363	MOV10	85.42	94.226	Q9HCE1	RBP,Epi	GSE70061;High-throughput data combine LncPro prediction
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000166266	CUL5	81.69	91.6782	Q93034	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000169375	SIN3A	74.92	96.3052	Q96ST3	Epi	ChIP-seq
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000133895	MEN1	19.21	95.0293	O00255	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000117697	NSL1	17.85	93.3236	Q96IY1	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000075089	ACTR6	17.2	91.4493	Q9GZN1	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000074201	CLNS1A	16.99	91.9875	P54105	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000277258	PCGF2	15.56	94.9641	P35227	TF,Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000127337	YEATS4	15.24	91.4127	O95619	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000138433	CIR1	12.31	93.5883	Q86X95	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000119760	SUPT7L	5.71	94.1586	O94864	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000160310	PRMT2	4.29	91.3823	P55345	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000128708	HAT1	3.69	92.9321	O14929	Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000073584	SMARCE1	3.42	93.2748	Q969G3	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000115816	CEBPZ	86.45	94.7902	Q03701	TF	ChIP-seq
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000124920	MYRF	68.38	94.8065	Q9Y2G1	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000101126	ADNP	64.03	95.9241	Q9H2P0	TF,Epi	ChIP-seq
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000101544	ADNP2	45.21	92.6323	Q6IQ32	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000184939	ZFP90	36.64	93.1642	Q8TF47	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000105856	HBP1	26.74	92.7959	O60381	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000204304	PBX2	15.87	93.1945	P40425	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000277258	PCGF2	15.56	95.334	P35227	TF,Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000154957	ZNF18	14.94	92.2599	P17022	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000136936	XPA	11.3	90.5269	P23025	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000152804	HHEX	9.1	92.9307	Q03014	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000186130	ZBTB6	8.61	91.2657	Q15916	TF	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000275111	ZNF2	6.63	91.3706	Q9BSG1	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000155363	MOV10	85.42	94.4463	Q9HCE1	RBP,Epi	GSE70061;High-throughput data combine LncPro prediction
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000068784	SRBD1	76.12	91.1842	Q8N5C6	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000176102	CSTF3	71.82	92.934	Q12996	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000136937	NCBP1	68.52	95.2113	Q09161	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000021776	AQR	65.46	95.751	O60306	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000125485	DDX31	63.91	90.4217	Q9H8H2	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000165934	CPSF2	60.48	95.365	Q9P2I0	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000107625	DDX50	59.95	93.5507	Q9BQ39	RBP,Epi	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000065457	ADAT1	23.74	92.5236	Q9BUB4	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000164902	PHAX	23.0	94.8536	Q9H814	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000165832	TRUB1	14.6	91.7332	Q8WWH5	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000278619	MRM1	13.85	91.8571	Q6IN84	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000138303	ASCC1	11.37	92.6444	Q8N9N2	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000153250	RBMS1	11.23	93.1829	P29558	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000072756	TRNT1	9.03	94.1413	Q96Q11	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000113300	CNOT6	7.91	90.432	Q9ULM6	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000278053	DDX52	6.01	91.7927	Q9Y2R4	RBP	NA
ENSG00000212978	ENST00000420918	AC016747.3	ENSG00000101138	CSTF1	3.57	91.5655	Q05048	RBP	NA
ENSG00000212978	ENST00000417691	AC016747.3	ENSG00000056097	ZFR	68.17	92.5594	Q96KR1	RBP	NA
ENSG00000212978	ENST00000417691	AC016747.3	ENSG00000198000	NOL8	48.68	90.244	Q76FK4	RBP	NA
ENSG00000212978	ENST00000422740	AC016747.3	ENSG00000198000	NOL8	30.4	90.2357	Q76FK4	RBP	NA

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lncRNA-DNA interaction for AC016747.3

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

RDX,C6orf89,GART,KRCC1,ARL16,PEX2,HELQ,POP1,ERI2,USP22,ARFIP2,BOD1,THAP4,PRPSAP2,MCRS1,AP3B1,TXNL4B,WDR89,FASTKD3,IFT52,TRIQK,IPP,DYNC2LI1,NEU1,UNK,CAPZA1,MFAP1,PPID,CHM,FKBP7,BCS1L,TRUB2,SLC16A4,CCDC47,QPRT,RFC1,TMEM184C,RAB11FIP5,UTP18,PIGG,STX3,MIEF2,GPATCH11,ZNF24,TRAPPC12,BCCIP,FAM120AOS,PIGP,WDCP,PIGW,EPCAM,SMAGP,RCE1,RPL26L1,LRRC41,METTL5,ENY2,HS1BP3,GMFB,STK16,RHOT1,WDR5B,MMADHC,EGLN1,SNX12,PPIL3,GCLM,ABITRAM,DPAGT1,KBTBD3,LYRM2,CHMP5,SUMF2,COMMD2,COMMD7,COA3,STRADB,NMNAT1,C9orf85,PARG,UBE2N,ARL1,PNO1,GMPR2,SGCB,DOK1,RNF40,PPIH,ACTR6,COA4,RAN,CCDC8,POGLUT2,SIN3A,PPP1R3D,UFSP2,CREB1,RAB10,SVBP,GPRASP2,STT3A,SH3GLB1,SDHC,PSMD1,ATP5F1B,STX18,NABP2,C19orf44,ADAM10,TMEM106A,RNF167,PSMD13,SNUPN,SNX11,UBAC2,TRIP4,CYB5D2,BNIP1,SDF2,POLDIP2,ERAL1,VPS35L,WDR70,NCBP1,ERI3,ILKAP,POLG2,CLOCK,LYPLAL1,CASC3,DDB1,CEP89,RIC8B,RPAP3,MOCS3,TRIM37,BACE1,TMEM231,ZBTB6,TIMMDC1,UBLCP1,HS2ST1,CTNS,ARMC10,MOV10,SEPTIN10,RFX7,CEP19,SLC17A5,MAP2K4,SYPL1,MSH6,VTI1A,SLC35A5,ELMO3,PSMA5,DUSP3,CDKN2AIPNL,SLC4A1AP,COPS3,MBD5,MIS12,DERL2,CBX1,HEATR3,TTF1,CAMKMT,TOR3A,GET1,LMAN2L,FANCF,AP1G1,NBR1,RAB3GAP2,CYTH3,PRKAA2,ERMP1,RDH14,JPT2,NIP7,ZFP62,ANXA5,TM9SF1,TRAM1,C17orf97,CDC27,RBM22,CASK,PAIP1,ZBED8,WWTR1,ORMDL1,RPP38,COQ7,RHOBTB1,PIGN,DDOST,IQCG,BRIX1,NKAPD1,FUZ,TMEM185B,ORC2,DCTN5,EMC7,PTPN14,UBE2E1,SLC35F5,LGALSL,SSR1,PTPN13,RNF121,BTF3L4,TFCP2,GTF2H1,MLH1,TYW3,USH1C,FAM229B,ZZEF1,DHX35,MTMR2,INTS2,MRPS27,CCDC191,MARVELD2,CHST10,UBXN2A,RNF111,TCTN3,UQCC1,C2orf76,PRELID3B,LRTOMT,ERGIC2,TMEM127,SLC39A11,TIMM10B,SMARCAD1,PPIL1,ZNF14,MBTPS1,SCRN3,FAM114A2,PKN2,P3H4,XPO1,COG7,ZMPSTE24,ARHGAP29,CZIB,TMEM126B,MPG,CIR1,STN1,TSPAN4,MTMR4,MBTD1,SEPSECS,RPA3,COMMD8,SDHAF2,PRELID1,ITGB1BP1,GAS8,IDH3B,WDR35,CASP6,DENR,RAB3IP,TMEM50B,TIFA,GALK2,CCDC24,GPX8,SEPHS1,FAM204A,PTRHD1,MYRF,PALB2,PRXL2C,EIF2AK2,PEX10,DECR2,BUD13,PGGT1B,TSR1,GLMP,RALBP1,ZFP3,DNAJA3,GCA,RCHY1,JKAMP,RFFL,CUL3,ELAC2,SKA2,KBTBD6,JMJD4,SDHD,TUBG1,OARD1,ELOVL1,IST1,NOB1,LRP2,RAB28,FAM172A,THADA,CEP20,SLC26A11,IFT57,SNX19,DENND5A,FANCL,GFPT1,PAQR5,CLTRN,CAND1,DPY19L3,MED7,PRUNE2,TNFAIP1,NOA1,FBXL3,ACTR3,PNPLA4,CSNK1G1,H3-3B,NEK11,BBOF1,ZC3H10,BET1L,THOC3,SLFN12,YWHAE,POLR2C,AZI2,DARS2,NDRG3,VEZF1,PRPF40A,MORF4L1,NDUFS1,SLC37A4,INO80C,NCSTN,LAMTOR3,SPATA5L1,ICE2,SMCR8,MRPL49,TMEM18,BIVM,BRCC3,C20orf96,EFTUD2,IMMT,COG8,SRP68,GLMN,METTL21A,ACYP2,PARD3,EXD2,TMX2,GCFC2,FAM136A,CTDSP1,TRNT1,SWAP70,MUL1,AIMP1,GUF1,DNAJC8,MRPL10,PHF12,EPN2,AGA,RPA1,ZZZ3,UGGT2,IFT140,NDC1,UNG,IMP4,MRM1,ATXN10,TRAPPC4,TAF7,FAAP24,PARS2,VAPA,KANSL2,NUDT12,ZSWIM3,TMCO1,HADHA,SLC25A46,PSMD14,SHISA4,CWC15,SLC39A9,MSH3,ASCC1,PPA2,DCTD,UTP14C,BBS2,PHTF1,DHRS13,GGNBP2,XRCC4,PRKAB1,RNF135,METTL23,GLT8D1,TSN,RTF1,C17orf75,FBXO8,PARP2,FBXO3,NAAA,LCMT2,EVC,SNAP23,NHP2,TMED10,HIP1,ABHD15,SRSF9,YIPF1,ZC3H8,METTL16,TMEM182,THAP1,ATE1,DZIP3,TTC8,SRBD1,GATB,APPL2,CCDC125,TMEM186,RNLS,CAMK1,FNTA,COA1,MOGS,KCTD18,MRPS23,TADA2A,CDR2,BOD1L1,RNF20,CLIC1,CPNE8,PNPO,CETN3,DNPEP,MLLT10,BHLHB9,USP40,SUMO3,UNC50,GOLGB1,PEX13,ZSWIM1,COMMD1,MCFD2,MOB4,MTIF2,MYNN,BCAS2,MRPS18B,TSPYL5,RPE,NIT1,DAD1,MRPS9,PIGO,SLC39A10,MED19,CANT1,NCKAP1,ZFR,PAFAH1B2,KIAA0319L,TMEM218,IFT20,ARMH3,TMEM199,MED29,PSMD5,ANKEF1,BTBD10,CCDC127,PUS10,C18orf32,SZRD1,C2orf68,MRE11,WDR54,MFF,NDUFAF7,DRAM2,HMBS,FRG1,TOR1AIP2,TXNDC9,ANXA7,AP5S1,LAPTM4A,PIGK,SREK1IP1,PIGF,AGPS,ARPP19,VPS54,SNX6,AASDHPPT,ACP1,TRAP1,TTC37,UEVLD,CNPY4,FRMD8,CBX5,NSL1,RYK,EPM2AIP1,TTC12,TGOLN2,ST3GAL2,CIAPIN1,ABCB6,RBBP9,SRR,DSTN,FAM104A,RAB29,CSTF2,MPPE1,PHF5A,PRKAG1,TMEM104,B9D1,EXOC7,ANKFY1,SPG21,NCK1,CERS5,PIGB,NOC3L,HARBI1,B3GNT9,RAB5IF,DDX23,SNRNP40,CCDC51,UNC119B,AMZ2,MTCH1,PCYOX1,LRIF1,MORN2,C11orf1,MED17,PYM1,PREPL,EPRS1,ALG2,ESCO1,PBX2,NAGK,TMEM17,XRCC5,STARD13,ATPSCKMT,NIPSNAP1,PKP4,MDM1,WASHC2C,STARD3,IQCE,TTC23,SMARCAL1,DARS1,STAM2,SMG6,TTC5,POMGNT1,DTD2,SMARCE1,WDR12,MKS1,MYL12B,C9orf64,YEATS4,DBR1,GDI2,DHFR,NME5,DDX52,MTX1,WARS2,STARD7,PSMG1,HEATR1,GTF3C3,AFTPH,EIPR1,PSMD10,TK2,RUNDC1,SNX17,TTC30B,DHFR2,DCAKD,XPC,TTC19,VAMP8,MYCBP,PHKB,CCDC115,RPS6KB1,OBI1,INCA1,ATMIN,ZMYND12,CNOT4,GSDME,GALNT18,N6AMT1,KANSL3,DHX57,C17orf58,MRPS30,ALG5,SIKE1,FBXO22,MLX,CCDC32,FKBP10,CHST14,NUP37,PTCD3,SP100,RAB1A,LLPH,NRAS,KAT2A,ALG14,TXNDC12,NFRKB,ZFP91,FTSJ3,RAD1,CTPS2,TMEM209,CSTF3,BORCS7,BMPR1A,ATG16L1,NDUFB5,BLOC1S2,ZBTB3,MRPL35,TERF2,PDIA6,PPP1R7,TMEM19,TRPC4AP,CEBPZOS,TBCK,TOR1A,ENDOV,BBS10,NLN,DPY30,MLH3,GLB1L,CADM1,PPIE,RBM43,TMTC4,OPTN,ITPA,SF3B6,ARL5A,POLI,AGFG1,TTC30A,ELP6,PGAP2,SH3BGR,CDC23,CCT2,MYL6,KIAA0753,SGSH,DCAF17,VPS41,GEMIN6,PFDN1,EPC1,SNW1,C9orf116,GOSR2,SNX7,MEAK7,CETN2,TMEM69,PHAX,TMEM128,HEATR6,CNOT11,HEXIM2,FBXL20,KLC4,DBT,ATRAID,NDUFA10,AAGAB,TTI2,CIAO1,MFSD11,PSPH,UQCRC2,KPNA3,TMEM263,NMT1,SUMO1,CCDC90B,VPS33A,UBE2G1,PGAP4,C2orf49,MAGT1,PLEKHA3,LAMTOR1,RNF25,CCDC121,SDCCAG8,RBM45,C5orf15,GAL3ST1,NFXL1,HLCS,ACTR1B,COX7A2L,CANX,CENPS,VEZT,PMS1,JAG1,ADAM17,DDX31,VIPAS39,DCUN1D1,METTL6,IKBIP,SPOP,TIA1,EIF2B3,DNAAF5,DDX58,MAIP1,RETREG3,SFXN4,TMUB2,RMDN1,FCF1,EDA2R,HNF1B,PCGF2,SLC35B2,VSIG10,TMEM68,CAD,MEN1,SLC49A4,RUSF1,MYG1,ERBB2,FECH,GIN1,FASTKD2,MRPS10,AAMP,ZCCHC10,PARP8,LIPT1,CWF19L2,SEL1L,PDE6D,EMC1,NUDCD2,LSM2,ARL6IP6,COA5,NIF3L1,GNS,ERCC8,SUCLG1,BBS4,CASP8,COX10,UXS1,SAR1A,RRAS2,METTL8,CBX8,TMEM131,MTREX,LZIC,SH3BP5L,RIC8A,TMX4,RETREG2,DPH5,ORAI2,FBXO36,POLR3F,BROX,XPA,NANP,GTF2H3,KDM1B,ADAT1,TM7SF3,YPEL5,EIF3I,SOS1,RTN4,ERMAP,WBP1,RWDD2A,RAD17,CISD2,NOL8,MED1,ADAL,TRIT1,TMEM237,CAMKK2,NUP133,CEBPZ,FPGT,DSTYK,DAP,EEF2KMT,METAP2,NPLOC4,BOLA3,MPHOSPH10,MOB1A,NUDT16L1,TMEM167B,INTS14,KIAA0100,TATDN3,LEPROT,TNPO1,TRIM25,HDDC3,POLR1B,COPS7A,RTN4RL1,SLFN5,POT1,TMEM267,NME7,CHCHD5,RIBC1,MAPK14,ZNF2,KAT7,GBA,COQ5,EIF6,NSRP1,SPTLC1,YIPF5,HSBP1,POLE3,ZC3H7A,AASDH,RP11-523H20.5,NAGLU,USP39,PAAF1,MIF4GD,ARV1,PPP1CC,ACBD5,ADCY9,OSCP1,RPRD1A,NOL10,BRI3BP,SLC25A43,CSE1L,POFUT2,TMEM9,PDZD11,PRKRA,SNX29,MXRA7,B4GAT1,BECN1,RECQL5,MED28,ZC3HC1,CXorf38,PIGM,PTCD2,C2orf42,ISCA1,GOLGA1,PTPMT1,SUPT7L,SHTN1,PRDX1,FLOT2,BCAP29,RNH1,EXTL2,CTSO,OSGEPL1,G6PC3,SEMA4F,IAH1,RBM4,C1GALT1C1,UROS,OLA1,URI1,TOGARAM1,FAM217B,IMMP2L,B4GALT4,LPGAT1,ANAPC7,PANK2,CHTF8,CCDC43,IQCD,TFB2M,PDIA4,PSMD3,AKAP10,RBM4B,PPCS,DNAJB2,TMEM99,PSMA7,CCDC102A,POLR3C,WDSUB1,ADNP,ORC4,GPKOW,STOML2,TEFM,DCTN2,GNPDA1,SLC38A6,LSM12,GET3,PRIMPOL,TMEM50A,CLNS1A,TIRAP,SPHK2,RAB22A,FTO,NBAS,THAP6,MPV17,FBXL5,ELMOD3,TTLL1,GGPS1,CSTF1,NECAP2,INTS13,MIGA1,KLHL12,AQR,UBTD2,RHOC,DNAJC7,BBS12,ASXL2,STRN,C8orf33,B4GALT1,GNPDA2,TRPM7,GTF2E1,CERS2,IFT46,EXOC6B,EID1,SLC24A1,GTF2A2,MAP4K3,COX15,ARSK,WDR41,UBFD1,HTRA2,CPSF2,AKIP1,FAM228B,TMED7,WDR61,RWDD2B,HEXIM1,FUNDC1,AP3S2,PPP1R21,CRIM1,FAHD1,PSME3,RBM18,CRYZL1,ARMC7,ATP6V1E2,DLAT,PYCR3,STK36,ARSB,GANAB,TM2D1,GRB2,COASY,FAM98A,ZW10,TMEM230,SS18,GSS,RAB3D,VPS35,CBR4,ZNF18,LMAN2,SGPP1,APPBP2,KCTD11,C1D,SOX12,SETD4,CNOT2,STEEP1,C1orf109,CPSF3,BLMH,GOLPH3L,TYSND1,TSNAX,SPAG16,PUM2,FAM118B,VPS11,USP3,ULK2,DTD1,GHDC,CCT4,SLC35A2,RBMS1,THAP8,RNASEH2C,CNP,BCDIN3D,TTC9C,RNF41,SLC30A9,NSMCE1,CUL2,CCPG1,TUBD1,PDCD6,COPS8,NDUFV3,PTPRA,PACC1,NUDT17,C17orf80,PIGU,STOM,PARD6G,SSR3,C2CD2,CRIPT,MRPS14,KATNIP,TIPIN,LRRC6,TMEM35B,NGRN,SPG11,TTC33,SUCLA2,ITFG1,MRPL38,TBC1D5,ASB8,FUT11,SNRPB2,CFAP97,AAR2,HINT1,ATF2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ATP6V0E1,NOL10,APITD1,HEXIM1,MOGS,CLTC,PRUNE,NOC3L,TRIM16L,C5orf15,CCDC90B,YEATS4,PAAF1,NTPCR,PFDN1,EFHC1,TIFA,SCPEP1,ANKRD6,FKBP10,METTL5,NCK2,RNF219,POLE3,IST1,BET1L,PSMD1,EED,C2orf74,CTTNBP2NL,DDX52,PARP2,ZFR,EFTUD2,PDCD6,EBAG9,TIGD6,HS2ST1,FECH,PIGM,MRPS27,HMBS,NLK,TMEM19,ATG4C,CTSO,RPRD1A,CALCOCO2,ZNF2,OSCP1,OARD1,MCCC2,CAMLG,COA4,RHOBTB1,PTPN9,FBXO8,DRG2,TMEM263,ZSWIM1,NDUFB5,EXD2,LRRC57,GMNN,CANX,TIMM22,P3H4,RNF135,PIGK,CEBPZOS,MANBAL,METTL13,MLX,CEBPZ,IFT81,PARD6G,C12orf10,COG8,CCDC8,CRIPT,KCTD3,PDF,GPATCH11,TRIT1,MED1,DNAJC8,ANXA5,TMEM18,AMZ2,ARL14EP,SRP72,UGGT2,MIS12,TYSND1,C16orf91,GORASP2,NUDT12,SGSH,RWDD2A,ITGB3BP,ALG5,NSL1,IARS2,SOCS5,ZNF18,ARMCX1,GGA3,G6PC3,NFRKB,SPTLC1,FOPNL,NANP,CIR1,DIRC2,PPP1CC,CYTH3,PRKRA,C6orf89,SLC39A11,METTL6,TMEM99,COMMD2,FAM173B,SRSF8,CNDP2,GRB2,METTL2A,TTC23,FER,NCK1,NPEPPS,POLDIP2,TMEM9,AZI2,THAP4,SS18,SLC4A1AP,ZNF14,ADAT1,WIPF2,TOR3A,STX3,RUFY1,STARD13,COA1,ADNP,FBXL20,TATDN3,CPSF2,EXOC6B,VAMP8,RBM22,ARMCX5,KIF2A,HARBI1,METTL16,DBR1,LSM2,PIGF,FUNDC1,DAD1,C17orf75,TK2,SEPSECS,RAB29,RFC1,MLLT10,IFT57,PSMA5,TLK1,SNX7,INO80C,C2orf68,KIAA0319L,SRSF9,TXNDC12,MRPL42,KLHDC9,SLC26A11,SNX19,THAP6,VPS25,WDR35,SEMA4F,WARS2,UEVLD,MTIF2,AIMP1,PPA2,TRIM25,KRT10,TRIP4,BCAS3,ATP1A1,KRCC1,COG7,ARL5A,ZBTB6,DDX1,KCTD2,RTN3,MUL1,GTF2H3,UNG,TTLL1,GLMP,COG4,PPIL1,YPEL2,RDH14,SNUPN,NAA40,ORC4,APPBP2,KAT2A,CAB39,RPAP3,SPRED1,CDK12,FAM32A,KBTBD6,LMAN2L,BORCS7,EPC1,SLC39A10,SVBP,STOM,MFSD11,HTRA2,IQCE,ALG14,FUT11,C19orf44,MOB1A,CTPS2,SLC37A4,RCHY1,RYK,FKBP9,NSMCE1,KTI12,RAB3IP,OCIAD1,STOML2,ATRAID,ITPA,SUPT7L,PIK3C3,CEP89,EXOC4,PTPRA,ASCC1,FAM179B,ERMAP,C2orf42,PAFAH1B2,NSUN4,TXNL4B,TMEM131,HEATR6,METTL21A,NIPA2,SMG6,FBXO3,PIGO,TMEM199,XPC,DHRS13,ELAC1,TLDC1,RAD17,PALB2,AACS,UFSP2,CWC15,ACTR2,NELFCD,NMNAT1,TSSC1,IDH3B,RWDD2B,OSTC,MRPS14,FTSJ3,STK36,CNOT6,ACTR1B,NDUFS1,TRAPPC4,ANKFY1,TUBD1,WDR43,C20orf24,PRMT6,TMEM50B,N6AMT1,ZFP3,C20orf96,DDX10,KIAA0556,SAR1A,LYRM2,DENR,BRCC3,ZNHIT3,GCA,RBM4,ZCCHC10,TMEM237,OSGEPL1,USP39,DDX58,CNPY4,COIL,FAM73A,RBBP9,FAM204A,ORC2,USH1C,CCDC125,AAED1,NBAS,LRRC41,YIPF5,KIF3B,PPID,MAPRE1,MARVELD2,GTF2A2,ACKR3,PDIA4,EPRS,CFAP36,CHST10,GTF3C3,C1orf56,TIA1,TSPAN4,YWHAQ,COG2,FAM114A2,NIPSNAP1,CAMK1,MTX1,C2orf81,MYNN,SPG11,TCTN2,RAB10,CRYZL1,NFU1,METTL9,TRAM1,KDM1B,PANK2,ANAPC7,APPL2,CCT2,TIPIN,MPHOSPH10,NDRG3,SCRN3,PPIL3,BLOC1S2,TBCK,POLR3C,PRR13,GTF2H1,SETD4,PUS10,SIKE1,ACBD5,COQ7,CAD,LZIC,RNF25,MRPS16,METTL8,CDC23,PHTF1,SPATS2L,NRAS,SDHC,COASY,FUZ,DYNC2LI1,MRPS10,C10orf76,SYS1,MED30,TIRAP,ZZEF1,TFCP2,SLC35F6,DERL2,GOLGA7,PSMD5,NUP85,TIMMDC1,MED28,RPL7L1,FAM175B,VRK2,IPP,SLFN5

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for AC016747.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PPP1R12C,MAFF,TUBGCP6

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000212978	ENST00000443946	exon_skip_90104	chr12:10709907-10710114	-23.59	-0.1303	YBX3	ENST00000228251	In-frame
ENSG00000212978	ENST00000443946	exon_skip_91507	chr12:47795905-47796016	-18.80	-0.2161	HDAC7	ENST00000427332	In-frame
ENSG00000212978	ENST00000443946	exon_skip_517627	chrX:154357250-154357274	-9.66	-0.5367	FLNA	ENST00000369850	In-frame
ENSG00000212978	ENST00000443946	exon_skip_84780	chr12:57720098-57720263	-22.00	-0.1719	OS9	ENST00000315970	In-frame

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for AC016747.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000212978	ENSG00000005448	WDR54	ACC,CHOL,ESCA,HNSC,KICH,LIHC,OV		KICH
ENSG00000212978	ENSG00000101384	JAG1	ACC,CHOL,KICH,THYM,UVM		KICH
ENSG00000212978	ENSG00000132475	H3-3B	ACC,CHOL,KICH,LIHC,THYM		KICH
ENSG00000212978	ENSG00000133121	STARD13	ACC,CHOL,KICH,THCA,THYM		KICH
ENSG00000212978	ENSG00000138036	DYNC2LI1	ACC,CHOL,DLBC,GBM,KICH,KIRC,LIHC,MESO,OV,PCPG,PRAD,SARC,SKCM,TGCT,THCA,THYM,UCEC,UVM		KICH
ENSG00000212978	ENSG00000138744	NAAA	ACC,KICH,LGG,PRAD,UVM		KICH
ENSG00000212978	ENSG00000143919	CAMKMT	ACC,CHOL,KICH,THCA,UVM		KICH
ENSG00000212978	ENSG00000196659	TTC30B	ACC,CHOL,GBM,KICH,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UVM		KICH
ENSG00000212978	ENSG00000203778	FAM229B	ACC,DLBC,GBM,KICH,OV,THCA		KICH
ENSG00000212978	ENSG00000206053	JPT2	ACC,CHOL,KICH,LIHC,MESO,PRAD,TGCT,THYM,UVM		KICH
ENSG00000212978	ENSG00000006611	USH1C	CHOL,KICH,KIRC,KIRP,LIHC,THYM		KICH
ENSG00000212978	ENSG00000018408	WWTR1	CHOL,KICH,LIHC,THYM,UVM		KICH
ENSG00000212978	ENSG00000105928	GSDME	CHOL,ESCA,HNSC,KICH,TGCT		KICH
ENSG00000212978	ENSG00000107201	DDX58	CHOL,KICH,KIRC,KIRP,UVM		KICH
ENSG00000212978	ENSG00000108423	TUBD1	CHOL,GBM,KICH,LIHC,PAAD,TGCT		KICH
ENSG00000212978	ENSG00000108641	B9D1	CHOL,GBM,KICH,MESO,THCA,THYM,UVM		KICH
ENSG00000212978	ENSG00000110328	GALNT18	CHOL,KICH,PAAD,THCA,THYM,UVM		KICH
ENSG00000212978	ENSG00000112981	NME5	CHOL,GBM,KICH,KIRC,LGG,THCA		KICH
ENSG00000212978	ENSG00000113273	ARSB	CHOL,KICH,KIRP,THYM,UCS		KICH
ENSG00000212978	ENSG00000114670	NEK11	CHOL,GBM,KICH,LGG,PRAD,THCA,UCS		KICH
ENSG00000212978	ENSG00000115652	UXS1	CHOL,KICH,LIHC,PAAD,SKCM,THYM,UCS		KICH
ENSG00000212978	ENSG00000116885	OSCP1	CHOL,GBM,KICH,TGCT,THCA,THYM		KICH
ENSG00000212978	ENSG00000117280	RAB29	CHOL,KICH,KIRC,KIRP,PCPG,UVM		KICH
ENSG00000212978	ENSG00000118965	WDR35	CHOL,KICH,PAAD,PCPG,THYM,UCEC		KICH
ENSG00000212978	ENSG00000119636	BBOF1	CHOL,GBM,KICH,LGG,THCA		KICH
ENSG00000212978	ENSG00000125449	ARMC7	CHOL,KICH,LIHC,PCPG,TGCT,THCA		KICH
ENSG00000212978	ENSG00000127946	HIP1	CHOL,KICH,LIHC,THYM,UVM		KICH
ENSG00000212978	ENSG00000129103	SUMF2	CHOL,KICH,LIHC,THCA,UVM		KICH
ENSG00000212978	ENSG00000129295	LRRC6	CHOL,GBM,KICH,KIRC,LGG,THCA,THYM		KICH
ENSG00000212978	ENSG00000134901	POGLUT2	CHOL,HNSC,KICH,LAML,PCPG,THYM		KICH
ENSG00000212978	ENSG00000135736	CCDC102A	CHOL,KICH,LIHC,SARC,THYM,UCS		KICH
ENSG00000212978	ENSG00000137168	PPIL1	CHOL,KICH,LIHC,OV,THCA,UCS		KICH
ENSG00000212978	ENSG00000137962	ARHGAP29	CHOL,HNSC,KICH,LIHC,THYM		KICH
ENSG00000212978	ENSG00000143156	NME7	CHOL,GBM,KICH,LIHC,TGCT		KICH
ENSG00000212978	ENSG00000143418	CERS2	CHOL,KICH,KIRC,LAML,MESO,UVM		KICH
ENSG00000212978	ENSG00000144283	PKP4	CHOL,KICH,LIHC,TGCT,THYM		KICH
ENSG00000212978	ENSG00000147003	CLTRN	CHOL,KICH,KIRC,KIRP,THYM		KICH
ENSG00000212978	ENSG00000150433	TMEM218	CHOL,DLBC,ESCA,GBM,KICH,LIHC,OV,PCPG,PRAD,TGCT,THCA		KICH
ENSG00000212978	ENSG00000152104	PTPN14	CHOL,KICH,MESO,TGCT,THYM		KICH
ENSG00000212978	ENSG00000153832	FBXO36	CHOL,GBM,KICH,KIRC,KIRP,MESO,THCA,THYM,UCS		KICH
ENSG00000212978	ENSG00000155366	RHOC	CHOL,GBM,KICH,LIHC,THYM		KICH
ENSG00000212978	ENSG00000155755	TMEM237	CHOL,ESCA,GBM,KICH,LGG,THYM,UCS,UVM		KICH
ENSG00000212978	ENSG00000159239	RP11-523H20.5	CHOL,GBM,KICH,SARC,TGCT		KICH
ENSG00000212978	ENSG00000160345	C9orf116	CHOL,GBM,KICH,KIRC,LGG,TGCT,THCA		KICH
ENSG00000212978	ENSG00000160991	ORAI2	CHOL,KICH,LAML,TGCT,UVM		KICH
ENSG00000212978	ENSG00000162869	PPP1R21	CHOL,KICH,KIRC,KIRP,LIHC,LUSC,MESO,PAAD,PCPG		KICH
ENSG00000212978	ENSG00000163521	GLB1L	CHOL,GBM,KICH,KIRC,KIRP,LGG,OV,THYM,UCS		KICH
ENSG00000212978	ENSG00000163629	PTPN13	CHOL,KICH,TGCT,THYM,UVM		KICH
ENSG00000212978	ENSG00000165152	PGAP4	CHOL,KICH,KIRP,THYM,UCEC		UCEC
ENSG00000212978	ENSG00000166578	IQCD	CHOL,GBM,KICH,LGG,TGCT		KICH
ENSG00000212978	ENSG00000173786	CNP	CHOL,KICH,LIHC,MESO,PCPG,TGCT		KICH
ENSG00000212978	ENSG00000186889	TMEM17	CHOL,GBM,KICH,KIRC,LGG,LUSC,MESO,OV,PCPG,PRAD,SARC,TGCT,THYM,UCEC,UCS		KICH
ENSG00000212978	ENSG00000187535	IFT140	CHOL,KICH,MESO,TGCT,THCA,THYM		KICH
ENSG00000212978	ENSG00000188010	MORN2	CHOL,GBM,KICH,KIRC,LIHC,OV,SKCM,TGCT,THCA,THYM,UVM		KICH
ENSG00000212978	ENSG00000197557	TTC30A	CHOL,GBM,KICH,KIRC,KIRP,LGG,MESO,PCPG,PRAD,SKCM,THCA,THYM,UVM		KICH
ENSG00000212978	ENSG00000213625	LEPROT	CHOL,GBM,KICH,LIHC,THYM		KICH
ENSG00000212978	ENSG00000214063	TSPAN4	CHOL,KICH,LIHC,SARC,THYM		KICH
ENSG00000212978	ENSG00000219626	FAM228B	CHOL,GBM,KICH,THYM,UCS		KICH
ENSG00000212978	ENSG00000243749	TMEM35B	CHOL,GBM,KICH,LAML,LIHC,THYM,UVM		KICH
ENSG00000212978	ENSG00000103485	QPRT	DLBC,KICH,KIRP,LAML,UVM		KICH
ENSG00000212978	ENSG00000066185	ZMYND12	GBM,KICH,MESO,THCA,THYM		KICH
ENSG00000212978	ENSG00000117450	PRDX1	GBM,KICH,LIHC,THCA,THYM		KICH
ENSG00000212978	ENSG00000168679	SLC16A4	GBM,KICH,KIRC,KIRP,THYM,UCS		KICH
ENSG00000212978	ENSG00000175279	CENPS	GBM,KICH,KIRC,LIHC,THCA		KICH
ENSG00000212978	ENSG00000072422	RHOBTB1	KICH,KIRC,KIRP,THCA,UCS		KICH
ENSG00000212978	ENSG00000081479	LRP2	KICH,KIRC,KIRP,MESO,THCA		KICH
ENSG00000212978	ENSG00000089050	RBBP9	KICH,KIRC,KIRP,PAAD,PCPG,THYM,UVM		KICH
ENSG00000212978	ENSG00000106772	PRUNE2	KICH,KIRC,KIRP,THYM,UCEC		KICH,UCEC
ENSG00000212978	ENSG00000182985	CADM1	KICH,SARC,TGCT,THYM,UVM		KICH
ENSG00000212978	ENSG00000184988	TMEM106A	KICH,KIRC,LAML,UCS,UVM		KICH
ENSG00000212978	ENSG00000196950	SLC39A10	KICH,LIHC,SARC,THYM,UVM		KICH
ENSG00000212978	ENSG00000198718	TOGARAM1	KICH,MESO,THCA,THYM,UCEC		UCEC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000141367	CLTC	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000141367	CLTC	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000141367	CLTC	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000141367	CLTC	5	CHOL,KICH,MESO,PAAD,PCPG
ENSG00000212978	ENSG00000204304	PBX2	ENSG00000175575	PAAF1	5	ACC,CHOL,KICH,LIHC,TGCT
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000182149	IST1	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000237651	C2orf74	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000154957	ZNF18	ENSG00000237651	C2orf74	5	DLBC,KICH,MESO,PCPG,THCA
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000237651	C2orf74	5	ACC,KICH,PAAD,PCPG,THCA
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000278053	DDX52	5	KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000056097	ZFR	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000056097	ZFR	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000113048	MRPS27	5	CHOL,MESO,PAAD,PCPG,THCA
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000275111	ZNF2	5	CHOL,KICH,MESO,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000169410	PTPN9	5	CHOL,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000081177	EXD2	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000115816	CEBPZ	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000152133	GPATCH11	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000152133	GPATCH11	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000152133	GPATCH11	6	CHOL,KICH,MESO,PAAD,PCPG,SKCM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000125686	MED1	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000125686	MED1	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000170322	NFRKB	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000170322	NFRKB	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000114744	COMMD2	5	CHOL,KICH,LIHC,PAAD,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000087995	METTL2A	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000087995	METTL2A	5	CHOL,KICH,MESO,PCPG,THCA
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000151422	FER	5	CHOL,KICH,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000163798	SLC4A1AP	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000163798	SLC4A1AP	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000163798	SLC4A1AP	7	ACC,CHOL,KICH,MESO,PAAD,PCPG,SKCM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000065457	ADAT1	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000065457	ADAT1	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000171475	WIPF2	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000171475	WIPF2	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000171475	WIPF2	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000144036	EXOC6B	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000151665	PIGF	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000108666	C17orf75	5	CHOL,KICH,LIHC,MESO,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000118965	WDR35	5	CHOL,KICH,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000186130	ZBTB6	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000186130	ZBTB6	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000079785	DDX1	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000079785	DDX1	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000079785	DDX1	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000079785	DDX1	6	CHOL,KICH,MESO,PAAD,PCPG,THCA
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000180901	KCTD2	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000180901	KCTD2	5	CHOL,KICH,PAAD,PCPG,THCA
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000111358	GTF2H3	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000111358	GTF2H3	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000115947	ORC4	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000115947	ORC4	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000115947	ORC4	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000115947	ORC4	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000115947	ORC4	5	ACC,CHOL,KICH,MESO,PCPG
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000062725	APPBP2	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000062725	APPBP2	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000062725	APPBP2	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000062725	APPBP2	6	CHOL,KICH,MESO,PAAD,PCPG,THCA
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000114988	LMAN2L	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000078142	PIK3C3	5	CHOL,KICH,LIHC,PAAD,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000115998	C2orf42	8	ACC,CHOL,KICH,MESO,PAAD,PCPG,SKCM,THCA
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000075568	TMEM131	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000075568	TMEM131	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000075568	TMEM131	5	CHOL,KICH,LIHC,MESO,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000075568	TMEM131	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000068097	HEATR6	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000068097	HEATR6	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000068097	HEATR6	6	CHOL,KICH,LIHC,MESO,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000068097	HEATR6	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000068097	HEATR6	5	CHOL,KICH,MESO,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000140157	NIPA2	5	CHOL,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000152942	RAD17	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000152942	RAD17	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000152942	RAD17	5	CHOL,KICH,PAAD,PCPG,THCA
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000083093	PALB2	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000083093	PALB2	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000083093	PALB2	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000113300	CNOT6	5	CHOL,KICH,LIHC,PAAD,THYM
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000156239	N6AMT1	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000180787	ZFP3	5	CHOL,KICH,MESO,PCPG,THCA
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000178105	DDX10	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000139726	DENR	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000128694	OSGEPL1	6	ACC,CHOL,KICH,MESO,PAAD,SKCM
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000121058	COIL	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000121058	COIL	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000121058	COIL	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000121058	COIL	5	CHOL,KICH,MESO,PCPG,THCA
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000151779	NBAS	6	CHOL,KICH,LIHC,MESO,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000151779	NBAS	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000151779	NBAS	7	ACC,CHOL,KICH,MESO,PAAD,PCPG,SKCM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000119041	GTF3C3	5	CHOL,KICH,LIHC,MESO,PCPG
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000119041	GTF3C3	5	ACC,CHOL,KICH,MESO,PCPG
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000125779	PANK2	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000125779	PANK2	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000125779	PANK2	6	CHOL,KICH,LIHC,PAAD,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000136044	APPL2	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000144306	SCRN3	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000144306	SCRN3	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000144306	SCRN3	6	CHOL,KICH,MESO,PCPG,SKCM,THCA
ENSG00000212978	ENSG00000101126	ADNP	ENSG00000145348	TBCK	5	CHOL,LIHC,MESO,PCPG,THYM
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000145348	TBCK	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000145348	TBCK	5	CHOL,KICH,LIHC,MESO,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000145348	TBCK	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000110768	GTF2H1	5	CHOL,KICH,LIHC,PAAD,THYM
ENSG00000212978	ENSG00000275111	ZNF2	ENSG00000110768	GTF2H1	5	ACC,CHOL,KICH,PAAD,THCA
ENSG00000212978	ENSG00000115816	CEBPZ	ENSG00000138036	DYNC2LI1	5	CHOL,KICH,LIHC,PCPG,THYM
ENSG00000212978	ENSG00000136936	XPA	ENSG00000138036	DYNC2LI1	5	KICH,LIHC,PCPG,TGCT,THCA
ENSG00000212978	ENSG00000184939	ZFP90	ENSG00000028116	VRK2	5	CHOL,KICH,LIHC,PAAD,PCPG
ENSG00000212978	ENSG00000186130	ZBTB6	ENSG00000028116	VRK2	5	CHOL,KICH,LIHC,PAAD,PCPG

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000212978.6	ENST00000420918.3	166	584	1084
ENSG00000212978.6	ENST00000417691.1	96	268	558
ENSG00000212978.6	ENST00000422740.1	96	591	881
ENSG00000212978.6	ENST00000443946.1	96	307	594

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential