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lncRNA: ENSG00000206417

Summary for H1-10-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000206417
	Gene symbol	H1-10-AS1
	Gene name	H1-10 antisense RNA 1
	HGNC	27953
	Entrez ID
	Gene type	antisense
	Synonyms	H1-10-AS1\|03q21.3\|H1FX-AS1
	UniProtAcc	Q4G0G2

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Structure and expression level for H1-10-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000206417	1.663697e+02	1.742322e+00	3.848657e-01	4.527090e+00	5.980000e-06	3.380000e-05	UP	CHOL
ENSG00000206417	2.297401e+02	1.020078e+00	1.264394e-01	8.067725e+00	7.160000e-16	1.050000e-14	UP	PRAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000206417	4.986035e-01	4.904109e-04	CHOL	9.773355e-04

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lncRNA-Protein interaction for H1-10-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000204227	RING1	17.07	93.2273	Q06587	Epi	ChIP-seq
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000077463	SIRT6	6.92	90.4298	Q8N6T7	Epi	ChIP-seq

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000167967	E4F1	69.4	92.1005	Q66K89	TF	NA
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000130254	SAFB2	67.14	95.467	Q14151	TF,RBP	Predict
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000099326	MZF1	55.38	93.6813	P28698	TF	ChIP-seq
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000147789	ZNF7	36.92	94.0226	P17097	TF	NA
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000256223	ZNF10	13.38	92.9763	P21506	TF	NA
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000167766	ZNF83	8.98	92.9232	P51522	TF	NA
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000105717	PBX4	8.36	91.587	Q9BYU1	TF	NA
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000250571	GLI4	5.72	90.9877	P10075	TF	NA
ENSG00000206417	ENST00000383461	H1FX-AS1	ENSG00000167967	E4F1	60.05	91.5672	Q66K89	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000130254	SAFB2	67.14	95.4051	Q14151	TF,RBP	Predict
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000004534	RBM6	66.87	95.1533	P78332	RBP	Predict
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000099622	CIRBP	21.09	91.6174	Q14011	RBP	NA
ENSG00000206417	ENST00000502789	H1FX-AS1	ENSG00000125970	RALY	6.62	93.9144	Q9UKM9	RBP	NA

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lncRNA-DNA interaction for H1-10-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for H1-10-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,IDH3A,TUBA1B,PNPO,UHRF1BP1L,MYH9,OXSR1,BECN1,HIPK1,RNF40,SNX6,SCP2,NRBF2,ACTR3,TRIP11,SCYL2,PLEKHB2,BZW1,GORASP2,PSMC1,SEC24B,CLTC,NCOA1,MRPL19,ATP2A2,GCLM,SH3GLB1,LZIC,LIMA1,LRRC59,CCDC47,BCL2L13,SNX19,M6PR,SEC24D,IQGAP1,GTF2H3,SLMAP,EEA1,CLIP1,STAT3,SEC23A,STK24,SRP54,LUZP1,MAPK1,EIF3J,SMAD1,CNIH1,AGFG1,SEC22B,BRCC3,USP9X,NIPA2,TANGO6,DYNC1LI2,FOXN3,NPTN,DNAJC3,WDR7,RP2,NCOA4,KPNA3,BCL9L,EPS15,ACTR2,VAMP7,TFIP11,TNPO1,SEC23B,PPP2R5C,KIF2A,CSNK1A1,TMOD3,CAB39,TTC37,RANBP2,SEC31A,GOLM2,ABCE1,ARL2BP,USP8,DPP8,CPSF2,ARCN1,NEMF,MCFD2,SDAD1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000206417	ENST00000502789	exon_skip_382458	chr3:38131595-38131638	-7.73	-0.1933	ACAA1	ENST00000333167	Frame-shift
ENSG00000206417	ENST00000502789	exon_skip_470226	chr7:103307595-103307708	-12.85	-0.1260	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for H1-10-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000206417	ENST00000511998	CNIH1	ENSG00000100528	ENST00000556113	-0.1217	640	-	CHOL
ENSG00000206417	ENST00000511998	SEC23A	ENSG00000100934	ENST00000557280	-0.1863	537	-	CHOL,PRAD
ENSG00000206417	ENST00000511998	SEC23A	ENSG00000100934	ENST00000553970	-0.1863	537	-	CHOL,PRAD
ENSG00000206417	ENST00000511998	NRBF2	ENSG00000148572	ENST00000611479	-0.1105	1	-	CHOL
ENSG00000206417	ENST00000511998	NCOA4	ENSG00000266412	ENST00000579039	-0.1063	284	-	CHOL
ENSG00000206417	ENST00000511998	PNPO	ENSG00000108439	ENST00000584061	-0.1081	251	-	CHOL
ENSG00000206417	ENST00000433902	CNIH1	ENSG00000100528	ENST00000556113	-0.1010	110	-	CHOL
ENSG00000206417	ENST00000433902	TANGO6	ENSG00000103047	ENST00000261778	-0.1581	1	-	CHOL
ENSG00000206417	ENST00000433902	PNPO	ENSG00000108439	ENST00000584061	-0.1514	1	-	CHOL
ENSG00000206417	ENST00000383461	CNIH1	ENSG00000100528	ENST00000556113	-0.1940	989	-	CHOL
ENSG00000206417	ENST00000383461	SEC23A	ENSG00000100934	ENST00000557280	-0.1925	2276	-	CHOL,PRAD
ENSG00000206417	ENST00000383461	SEC23A	ENSG00000100934	ENST00000553970	-0.1925	2276	-	CHOL,PRAD
ENSG00000206417	ENST00000383461	NCOA4	ENSG00000266412	ENST00000579039	-0.1018	1477	-	CHOL
ENSG00000206417	ENST00000383461	PNPO	ENSG00000108439	ENST00000584061	-0.1225	1255	-	CHOL
ENSG00000206417	ENST00000383461	PNPO	ENSG00000108439	ENST00000583245	-0.1055	949	-	CHOL
ENSG00000206417	ENST00000502789	CNIH1	ENSG00000100528	ENST00000556113	-0.1326	516	-	CHOL
ENSG00000206417	ENST00000502789	SEC23A	ENSG00000100934	ENST00000557280	-0.1211	471	-	CHOL,PRAD
ENSG00000206417	ENST00000502789	SEC23A	ENSG00000100934	ENST00000553970	-0.1211	471	-	CHOL,PRAD
ENSG00000206417	ENST00000502789	NRBF2	ENSG00000148572	ENST00000611479	-0.1036	390	-	CHOL
ENSG00000206417	ENST00000511998	PNPO	ENSG00000108439	ENST00000585320	-0.1315	5	-	CHOL
ENSG00000206417	ENST00000511998	SCP2	ENSG00000116171	ENST00000430330	-0.1007	673	-	CHOL
ENSG00000206417	ENST00000511998	SEC24D	ENSG00000150961	ENST00000506622	-0.1151	694	-	CHOL
ENSG00000206417	ENST00000433902	PNPO	ENSG00000108439	ENST00000225573	-0.1912	1	-	CHOL
ENSG00000206417	ENST00000383461	PNPO	ENSG00000108439	ENST00000585320	-0.1448	1282	-	CHOL
ENSG00000206417	ENST00000383461	SEC24D	ENSG00000150961	ENST00000506622	-0.1882	1	-	CHOL
ENSG00000206417	ENST00000502789	PNPO	ENSG00000108439	ENST00000225573	-0.1698	320	-	CHOL
ENSG00000206417	ENST00000502789	SCP2	ENSG00000116171	ENST00000478274	-0.1096	1	-	CHOL
ENSG00000206417	ENST00000511998	SLMAP	ENSG00000163681	ENST00000416658	-0.1562	1	-	PRAD
ENSG00000206417	ENST00000511998	SLMAP	ENSG00000163681	ENST00000495364	-0.2148	795	-	PRAD
ENSG00000206417	ENST00000511998	SLMAP	ENSG00000163681	ENST00000494088	-0.1767	1	-	PRAD
ENSG00000206417	ENST00000433902	SLMAP	ENSG00000163681	ENST00000416658	-0.1499	1	-	PRAD
ENSG00000206417	ENST00000433902	SLMAP	ENSG00000163681	ENST00000495364	-0.1665	1	-	PRAD
ENSG00000206417	ENST00000433902	SLMAP	ENSG00000163681	ENST00000494088	-0.1499	1	-	PRAD
ENSG00000206417	ENST00000383461	SLMAP	ENSG00000163681	ENST00000416658	-0.1156	1	-	PRAD
ENSG00000206417	ENST00000383461	SLMAP	ENSG00000163681	ENST00000495364	-0.2441	2054	-	PRAD
ENSG00000206417	ENST00000383461	SLMAP	ENSG00000163681	ENST00000494088	-0.1324	2028	-	PRAD
ENSG00000206417	ENST00000502789	SLMAP	ENSG00000163681	ENST00000416658	-0.1099	212	-	PRAD
ENSG00000206417	ENST00000502789	SLMAP	ENSG00000163681	ENST00000495364	-0.2049	117	-	PRAD
ENSG00000206417	ENST00000502789	SLMAP	ENSG00000163681	ENST00000494088	-0.1200	285	-	PRAD

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000206417.7	ENST00000511998.1	47	51	194
ENSG00000206417.7	ENST00000433902.2	303	910	2
ENSG00000206417.7	ENST00000383461.5	110	154	483
ENSG00000206417.7	ENST00000502789.2	120	361	2

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential