 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | GGA3,VAMP1,ATM,GABPB2,XRN1,FANCL,ERI2,TTC17,RBM39,ODF2L,MFSD8,GPATCH8,ANGEL2,LENG8,MSL2,SH2B1,STAG1,ATN1,PRR3,ADPGK,MYSM1,TTC31,DHX38,ITFG2,ZXDC,MAPK8IP3,IQCB1,FBXO41,KAT8,INTS3,NCAPD2,SUGP2,N4BP2L2,PPWD1,DMTF1,L3HYPDH,RELCH,FAM193A,ZC3H7A,MLLT6,UNKL,CEP95,CSAD,PIGG,BAZ2A,LMBR1L,SPIN3,NHLRC3,TBRG1,ASTE1,DCAF8,LAMA5,KLHDC4,PHYKPL,IRAK4,STAT2,SF3B1,CCNL2,TET3,ZBTB5,VMP1,AP1G2,ZFP14,CENATAC,FAM111A,CLK3,RNPC3,OGA,PARP11,ANKRD10,WDR5B,TENT4A,MSANTD2,TUBGCP6,ANKMY1,CCDC14,WDR59,SMARCC2,LRCH3,SON,BTBD19,NUMA1,PHF12,SUPT7L,MORC3,ZBED5,PHF8,OSGEPL1,TTC14,KNTC1,NBEAL2,S100PBP,TYK2,SSH1,MPHOSPH9,CCNT2,CALCOCO1,HECTD1,TAZ,SPG7,KDM5A,TOGARAM1,FAM76B,POGZ,SMG1,ATR,FGFR1OP2,TMEM106A,BRWD1,SCYL3,PHC1,CLCN6,ECHDC2,LRRFIP2,OGT,PCNT,RBM26,TAF1C,BCLAF3,TRAF3,RBM25,LCAT,ARID4B,ASH1L,CNST,POLG2,FUBP1,TUT4,IFT80,MLH3,CHKB,CLSTN3,FAN1,SETD6,CPSF7,KANSL1L,EP400,POLI,ANKDD1A,CTC1,ACAD10,PRPF39,CLK1,LRIG2,EZH1,KIAA0753,RABL2A,GTF3C2,SS18L1,ELMOD3,PCED1A,DDX17,MOV10,OFD1,SRRM2,HEATR5B,CHD4,RFX7,ING4,SLX4,SENP7,MTRF1,RAD52,MECP2,SMYD4,NBPF11,CMTR2,ACIN1,DYRK1A,ZC3H8,MARF1,RSRC2,ATAD2B,CEP44,CEP290,RBM41,HERC2,ENOSF1,ARGLU1,MAU2,DZIP3,NEPRO,WBP11,ANKRD11,NAA25,CDAN1,PAXBP1,C1RL,CCNL1,SLC24A1,NEMP1,WSB1,SETD5,ZFP62,GON4L,ERV3-1,ANKRA2,C2orf49,VMAC,KMT2D,CELF1,YTHDC1,RSRP1,TMEM161B,IL11RA,TIGD1,ELK4,RBM45,CHD2,GPS2,NCBP3,R3HDM2,USF3,CLEC2D,AUTS2,CCDC93,TTC13,CUL9,PHC3,ZGPAT,POGLUT1,NBPF15,STK36,PASK,TIA1,ANKLE2,LRRC37B,GOLGA8B,HEMK1,HCN3,MCM3AP,SUPT20H,KANSL1,NSUN6,HP1BP3,SP110,CCDC191,ALPK1,STRADA,VPS13C,DNMT3A,NR2C2,PAN2,STAT6,DIDO1,GOLGA8A,DDX11,PPHLN1,C2orf68,MRE11,POLG,SETD4,NEIL1,RBM6,SZT2,POLE,TRMT13,KHNYN,CREBBP,ZNF862,DDX5,AARSD1,CCDC82,ARID4A,RBM5,CCDC142,NKTR,ZFC3H1,MTMR4,CRAMP1,LUC7L,MBTD1,WDR6,PNN,ATXN2L,C19orf71,TTLL3,EPM2AIP1,ZNF84,DDX42,SYNGAP1,CASP8,PARP6,CEP192,EIF4A1,WDR27,OBSCN,MAPKAPK5,HECTD4,EME2,KMT2A,REV1,RBP5,EXOC7,KHDC4,NR2C1,TPR,ASXL1,USP31,DENND4B,NRIP2,PNISR,MAN2C1,SFPQ,TMEM63A,CARD8,WBP1,RUFY2,CCDC57,RBM33,NOL8,ZMYM1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000205885 | ENSG00000013441 | CLK1 | CHOL,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000032219 | ARID4A | CHOL,KIRC,LIHC,LUAD,MESO,PAAD | | CHOL | | ENSG00000205885 | ENSG00000069493 | CLEC2D | CHOL,ESCA,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000092148 | HECTD1 | CHOL,LAML,LIHC,LUAD,MESO | | CHOL | | ENSG00000205885 | ENSG00000100288 | CHKB | CHOL,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000102125 | TAZ | CHOL,KIRC,LUSC,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000108389 | MTMR4 | CHOL,LIHC,LUAD,PAAD,TGCT | | CHOL | | ENSG00000205885 | ENSG00000109046 | WSB1 | CHOL,KIRC,LAML,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000117616 | RSRP1 | CHOL,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000132522 | GPS2 | CHOL,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000135473 | PAN2 | CHOL,KIRC,KIRP,LAML,LIHC,LUAD,LUSC,MESO,PAAD | | CHOL | | ENSG00000205885 | ENSG00000138834 | MAPK8IP3 | CHOL,ESCA,KIRC,LUAD,LUSC,MESO,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000139636 | LMBR1L | CHOL,KIRC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000161960 | EIF4A1 | CHOL,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000162852 | CNST | CHOL,LAML,LIHC,MESO,TGCT | | CHOL | | ENSG00000205885 | ENSG00000167615 | LENG8 | CHOL,KIRC,LUAD,LUSC,MESO,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000175265 | GOLGA8A | CHOL,KIRC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000175309 | PHYKPL | CHOL,KIRC,KIRP,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000175455 | CCDC14 | CHOL,ESCA,KIRC,KIRP,LAML,LIHC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000176542 | USF3 | CHOL,LIHC,LUAD,MESO,PAAD,TGCT | | CHOL | | ENSG00000205885 | ENSG00000184465 | WDR27 | CHOL,ESCA,KIRC,LAML,PAAD | KIRC | | | ENSG00000205885 | ENSG00000185158 | LRRC37B | CHOL,KIRC,LAML,LUAD,MESO | KIRC | | | ENSG00000205885 | ENSG00000186166 | CENATAC | CHOL,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000214021 | TTLL3 | CHOL,KIRC,LUAD,LUSC,MESO,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000215252 | GOLGA8B | CHOL,KIRC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000221978 | CCNL2 | CHOL,KIRC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000256525 | POLG2 | CHOL,KIRC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000266338 | NBPF15 | CHOL,KIRC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000213398 | LCAT | ESCA,KIRC,LUAD,LUSC,PAAD | KIRC | | | ENSG00000205885 | ENSG00000062716 | VMP1 | KIRC,LUAD,LUSC,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000135637 | CCDC142 | KIRC,LIHC,LUAD,LUSC,MESO,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000139631 | CSAD | KIRC,LAML,LUAD,LUSC,MESO,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000184445 | KNTC1 | KIRC,KIRP,LAML,LIHC,LUAD,LUSC,MESO,PAAD | KIRC | | | ENSG00000205885 | ENSG00000197774 | EME2 | KIRC,LUAD,LUSC,MESO,PAAD,TGCT | KIRC | | | ENSG00000205885 | ENSG00000222009 | BTBD19 | KIRC,KIRP,LUAD,MESO,TGCT | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000205885.6 | ENST00000435921.5 | 111 | 13 | 348 | | ENSG00000205885.6 | ENST00000541775.4 | 94 | 541 | 257 | | ENSG00000205885.6 | ENST00000536679.4 | 141 | 28 | 453 | | ENSG00000205885.6 | ENST00000382215.3 | 143 | 115 | 546 | | ENSG00000205885.6 | ENST00000535078.1 | 143 | 115 | 546 |
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