 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | POLR1D,FKBP8,MAD2L2,GIPC1,COPS7B,ARL16,UXT,TCEA2,SLIRP,NDUFS3,CLPTM1L,BOD1,THAP4,MRM2,KRT10,MCRS1,DBI,BLVRB,IFT22,TMEM234,C12orf57,POLD2,IFT52,NUDT18,PSMB7,PET100,PPP2CA,ATP5MG,WDR83OS,C1orf56,SHARPIN,DPM2,SLC50A1,CFAP20,QPCTL,PLP2,KDELR1,SRP19,CACFD1,TMUB1,TMEM106C,RHNO1,HINT2,ACD,RPS27A,PIR,TMEM179B,MDH2,TIMM17B,B3GAT3,ISCU,RPL41,CENPB,MRPS12,NDUFA11,NDUFB9,ZNF622,RCE1,PIGX,RPL26L1,ENY2,STK16,SNRPA,SMUG1,WDR54,SNX12,KCTD13,DTYMK,TRAPPC2L,CCNQ,FAAP20,COMMD7,COA3,UBE2T,SURF2,TERF2IP,PNO1,GLRX2,EBNA1BP2,NDUFA3,PPIH,XXYLT1,INPP5K,COA4,RAN,RRP36,CDK2AP2,COG4,SVBP,NSDHL,MICOS13,TAZ,GINS2,NABP2,FAM104B,NDUFB2,MRPL13,UQCR11,RNF167,PSMD13,EOLA2,GTF2H5,UBAC2,SNX11,ACTG1,USE1,RGS19,GLRX5,TOMM34,BNIP1,SDF2,TMEM208,CYSTM1,RAB4B,ERAL1,UQCC2,TARBP2,ERI3,CALM3,CISD3,LYRM4,PRCC,ENSA,PSENEN,SSU72,CEP89,TMEM242,UROD,TMEM39B,SNHG32,CBY1,ABHD14B,WDR83,OSGEP,USF1,TIMMDC1,MAD1L1,GLA,WASHC3,BTF3,BABAM1,GPR137,MRPS34,MRPL14,TPI1,TOMM40,PIH1D1,TMEM243,CTU2,PSMA5,CDKN2AIPNL,COPS3,GAR1,DERL2,TSSC4,B3GALT6,PFDN6,LMAN2L,MFSD3,COMT,FPGS,RBM42,ATP5MK,CFL1,ILF2,RDH14,NOC4L,TMEM101,RUVBL1,ALKBH2,MEA1,RPL35,RBM22,NDUFA2,BORCS6,CLPP,MIIP,TMEM160,TIMM8A,PARL,C18orf21,FDX2,HDHD3,MCAT,C12orf73,BRIX1,DYNLT1,EMC7,PSMB3,UBE2E1,TSC22D4,MTLN,MRPS2,FAM229B,ZNF593,UBE2C,TOE1,ATG4B,CENPM,MRPL57,PAFAH1B3,MED8,C2orf76,BORCS8,COX6C,YIF1B,PHC2,CDKN2D,CCDC159,HMGN3,CCDC167,EBPL,TK1,YIPF3,SLC25A39,NDUFB1,PNKP,P3H4,YKT6,APEH,CZIB,ACOT8,CDC123,MLF2,RABL6,MPG,SPCS1,PDRG1,HDDC2,PFN2,ELOF1,DCUN1D5,RPA3,COMMD8,HEXD,COA6,SDHAF2,EEFSEC,TUFM,PRELID1,HDAC8,RPL23A,IDH3B,SPATC1L,PMVK,KDM1A,ANAPC11,CCDC24,TOR2A,HCCS,SKP1,GABARAP,RRP7A,CCDC12,EIF3K,PTRHD1,UQCRHL,CCDC34,ALKBH3,RAB1B,THOC7,MRPL37,OTUD5,CDK5,COX7A2,CLTB,MCRIP1,MECR,RABEPK,SDF2L1,CYB561D2,POC1A,PCYT2,ABHD8,ISCA2,TRIR,JMJD4,MRPL52,SCNM1,PRADC1,DPM1,RTRAF,NDUFB3,USP27X,PES1,DNAJC4,MRPL55,EMG1,CCDC28B,NMRAL1,NDUFB8,SSR4,COX6B1,SNRNP25,NDUFS8,DDX56,PRR3,FAM98C,PNPLA4,COX5A,IP6K2,CD63,SWI5,NDUFB11,YIF1A,NPRL3,IFTAP,RPL23,ATP6V0B,C19orf53,PHB2,INO80C,PHF23,RPN1,TAX1BP3,PSMB2,MRPL20,CAMK2N1,COX16,GUK1,CDC20,MRPL28,IQSEC2,HSCB,ADPRM,MRPS28,ARFGAP1,UCHL3,MIX23,HPF1,PFDN2,RPL13A,SMARCB1,ACYP2,RPL37A,UNC45A,LSM3,SURF1,NUBP2,PTGES2,DNAJC8,LCMT1,PCLAF,C11orf68,MTA2,SLC25A5,GPN2,ACBD6,INTS11,COMMD9,CLN5,HMGN2,BCAP31,FIS1,GMDS,GTPBP6,MRPL24,SPACA9,DUS2,PCBP2,STYXL1,PUF60,RPA2,MAN1B1,SMPD2,TRAPPC4,UBL7,PSMC3,ASPHD1,CHCHD2,NPDC1,NAA38,FAAP24,FEN1,POLR3K,TMCO1,NME4,PSMD14,JTB,ANAPC13,AP5Z1,MRPS24,TBL3,TBCA,SLC39A7,TMEM251,TPT1,DNAJB11,CCDC106,MED6,CCDC137,PPA2,GGCT,TUBB4B,EMD,LAS1L,PSMB5,HMGB1,RFC4,MED27,NAA10,NELFE,DOHH,METTL23,TRMT2B,C17orf75,EOLA1,MAF1,STX8,G6PD,NHP2,TUSC2,EPN1,EVA1B,C11orf98,SH3GL1,ELP5,PGP,ALDOA,CHMP2A,BRMS1,SYCE1L,MRPS15,MPC2,REEP4,YIPF1,MYDGF,PFN1,UBL4A,PPP1R3F,THOC6,STRAP,MPND,DNAJC19,CLEC11A,PTTG1,PQBP1,ZNF48,COA1,MRPS23,PEX11G,ATG4A,UQCRFS1,RBM3,TRADD,RER1,SLC35C2,IFI27L2,REXO4,PTRH2,SGF29,NKAP,NAP1L1,NXT1,CETN3,POLR2L,MBD3,GLTP,SERF2,RPS10,SYNGR2,VPS28,PSME1,TRPT1,FIZ1,SUMO2,AK6,MRPL36,VPS4A,NIT1,HDAC1,DAD1,CSTB,NUDT22,MED19,UPF3B,SMIM12,RABEP2,CD2BP2,PTOV1,ALKBH4,DMAC1,TSPAN17,CDC37,PYURF,DHRSX,HAUS1,NDUFA12,CCDC127,SHKBP1,PLGRKT,NDUFAF5,AP4M1,SLC10A3,SLC41A3,HMBS,FRG1,KRTCAP2,S100A4,AK2,RPS23,TRIAP1,NPM3,TMLHE,TMEM134,PRMT1,POP5,CDIPT,CCT7,SYF2,ORAI3,ZDHHC24,NTHL1,MYL5,UBXN6,GDI1,CNPY4,ESD,UBAC1,METTL26,CALR,FKBP3,UBE2L3,CIAPIN1,SCAND1,COX14,PSME3IP1,NAP1L4,PPP1R14B,CAPZB,RBM8A,NDUFA6,SLC25A3,SHF,SMYD3,UBXN11,HSPBP1,TUBB,CCDC71,NAIF1,NDUFAF2,ATP6AP1,DDX41,DTNBP1,MESD,ISOC2,S100A13,SSBP3,CERS5,DHRS7,R3HDM4,USF2,ATPAF2,AKR7A2,COPRS,RALY,CORO1B,RAB5IF,TRIOBP,JOSD2,SNRNP40,AMZ2,EMC10,TMEM187,SRA1,NOSIP,MTCH1,ATP5IF1,FAM3A,CPTP,PSME2,VPS72,ACOT7,IDH3G,BLOC1S1,TAF11,C11orf1,DUT,MORN2,STMN1,NDUFS6,PYM1,NUDT1,ATP5F1E,PEF1,AP2S1,RPS27,ZBTB8OS,TRMU,ATP6V1D,MYPOP,CCDC107,CTBP1,MRPL34,UBE2B,PSMA2,SEM1,B4GALT3,STMP1,ARF5,JPT1,CDPF1,MRPL47,UBE2J2,NAT14,MYL12B,DNPH1,C1orf35,NME2,LSM10,TIMM13,MTIF3,LYSMD2,LYPLA2,MARCHF9,C14orf119,NPRL2,MRPL2,COQ3,EFNA4,CCDC85B,TAF12,PSMD10,SNX17,ZC4H2,VAMP8,CLK3,HDAC11,GFER,UQCRB,TIMM9,SH3BGRL,HHLA3,MIEN1,LSM5,USP11,SLC66A1,SLC52A2,H2AJ,BCAT2,ALG5,UQCRH,TP53I13,SEC61B,COQ4,WDR45,COPS9,ZMAT5,UBA1,STX10,FIBP,LLPH,BEX5,C1QBP,ECI1,RPL39L,SNU13,PMF1-BGLAP,LRRC23,CREB3,TMEM223,SNRPD3,RNPS1,NDUFB5,UQCRC1,SAP18,CCNH,RPL36AL,CYBC1,CEBPZOS,COPE,DPY30,BLCAP,FAM207A,PPIE,MRPL11,SLC2A8,FAM50A,ITPA,MAP2K2,BAD,RAMP2,CHMP1A,PTS,ELP6,COX7B,CCDC22,CDK16,ALKBH7,TMEM258,MYL6,GEMIN7,GEMIN6,PFDN1,CIB2,PSMB8,PDIA3,TXN,PHF1,PABIR2,CETN2,SCRN2,GMFG,ANKS3,ATRAID,MRPL17,DPM3,AAGAB,DDA1,UCK1,SMDT1,OSTF1,SEC61G,ANKRD54,MARCKSL1,TMEM263,CHID1,SUMO1,RASSF7,LAMTOR1,TAF10,COX4I1,BCL2L12,LRPAP1,ECSIT,SAC3D1,COX7A2L,NSMCE2,B3GALT4,RPS6,DEXI,GEMIN2,METTL6,EIF2B3,SAAL1,ARFRP1,CIAO2B,MCRIP2,IFI27L1,GAPDH,SLBP,GPAA1,COQ2,MRPL27,PSMG3,TRAPPC3,MYL6B,NOL7,UQCR10,SAYSD1,C19orf25,ARPC4,MYG1,ABHD10,VPS33B,DTX3,PSMB1,ERCC1,AAMP,TLE5,CKS1B,PKM,CPNE1,PDE6D,ABHD14A,SUV39H1,NUDCD2,LSM2,TRMT61A,COA5,DYNLL1,MICOS10,SUCLG1,SERTAD1,C1orf54,AIFM1,TWF2,EIF1B,NSMCE4A,CKLF,ATP5F1D,DPH5,ATP5PF,RPS13,UBE2M,FUNDC2,MRPL43,APRT,TOMM7,APEX2,ATP6V0D1,NDUFAF1,GPS1,RUVBL2,B9D2,EIF3I,NOP53,IRF2BP1,HEBP2,CISD2,NDUFAF8,FKBP2,IMMP1L,SSR2,CTNNBIP1,NDUFB10,TPRA1,DDRGK1,PSMD6,ATP5PB,DAP,PRDX5,GEMIN8,BOLA3,SH3BGRL3,NUDT16L1,CFDP1,RPS29,TMEM115,AKR1B1,MRPS26,TXN2,ARMCX6,UBE2I,IRF3,COPS7A,TMEM161A,NPC2,PLEK2,SERGEF,NDUFA13,C7orf50,C1orf122,DCTN3,COQ8B,NUCB1,RRNAD1,GADD45GIP1,SNRPD2,KAT8,ZSWIM7,EIF6,HRAS,SLC25A11,EIF3F,HSBP1,CHCHD7,ERH,RP11-523H20.5,NAGLU,IGBP1,RPS26,TTC1,NDUFA4,BANF1,BCL7C,MOSPD1,SEC13,MFSD10,SPRYD7,SLC25A1,ARPC5L,TMEM9,ASMTL,RPL27,COMMD5,PDZD11,PRKRA,CINP,HAX1,NDUFAF4,IFT27,ZNHIT1,BIRC5,NARF,PHKG2,PMF1,TIMM10,BUD31,ASB6,EMC3,SS18L2,POLR2J,PJA1,SENP3,PTPMT1,RFXANK,FAM89B,ARL3,PRDX1,RAB13,NT5C3B,CLN3,RNH1,MED31,PA2G4,TM2D3,KEAP1,G6PC3,HEXA,UROS,CFAP410,SPPL3,PPP1CA,MRTO4,NUDT2,NUDT14,ETHE1,LSM4,C1orf50,OAZ2,SNRPB,DNAJB2,PSMA7,UFD1,STOML2,DCTN2,COX17,ATP5MJ,AAAS,RABAC1,ATP6V1F,GET3,RNASEH2B,UBL5,TXNDC17,RPS8,RPS11,PLEKHJ1,HMGB2,SLC35B1,PSMA4,TXNL4A,STX5,OCIAD2,TTLL1,PPP2R3C,GPATCH3,NECAP2,ING4,NDUFB7,MPP1,NSUN5,TMEM9B,ELOC,UBXN1,MRPS33,DGAT1,RHOC,THYN1,MANF,MRPS18C,PGLS,RRAS,PRAF2,RAB11A,GLRX3,PEX16,ETFB,IFT46,EID1,TEDC1,TRAIP,ERP29,FAF1,EFHD2,LRRC29,AUP1,AKIP1,STOML1,PDAP1,CDC26,FUNDC1,RBM10,RPL36A,NDUFC1,COA8,PCBP4,THAP3,MTFR1L,VEGFB,CRYZL1,ARMC7,SPIN2B,MOSPD3,PORCN,OAZ1,ATOX1,CST3,MOB2,NDUFA8,SPATA2L,PRPF19,COMMD6,COASY,STMN3,TMEM230,SPATA33,GSS,RPS24,NDUFB6,SMG9,TIMM29,TMA7,LMAN2,ITGAE,EMC9,MACROD1,YBEY,KIFC1,STEEP1,SPATA24,SLC25A6,TPRG1L,CARD19,POLR2E,KLHDC3,RPS27L,NEDD8,CCNI,SPAG16,DUSP28,FTSJ1,NACA,HMGN5,BOLA1,ANP32A,TSR3,S100A11,RPS19BP1,SMIM4,RNASEH2C,BRI3,PLEKHO1,RILPL2,BCDIN3D,TOMM5,ADPRS,NSMCE1,SEC11A,PIN1,GALK1,ATP5MC2,SIL1,TUBA1A,MED10,RNF5,HOMER3,P3H1,NDUFV3,DGCR6L,PIGU,MDP1,SPSB2,REX1BD,CHMP4B,CRIPT,TFPT,PPIB,HSD11B1L,FASTK,CYHR1,SIRT6,MACROH2A1,FXYD5,ZNRD2,TMEM54,ECH1,DXO,HSPB11,EMC8,MRPL54,NFKBIE,FAM174C,HINT1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | NF1,DSTYK,NEK4,SMYD4,TULP4,MBP,DHTKD1,RPRD2,MNT,LPIN1,CEP170,PDPR,ATM,MAP4K3,TAF4,MLXIP,MICAL3,TRAPPC10,MTR,EHBP1,CEP104,NPEPPS,RC3H1,ACVR1B,KIAA1109,MCM3AP,KAT6B,ITGB1,AP1G1,ARHGAP21,HECTD1,ZNF17,FCHO2,UBE4A,TUT4,ANKFY1,SRRM2,FGD6,MTMR4,DIP2C,DAPK1,PITPNM2,ATL2,VPS13B,INTS3,KANSL1L,DIP2A,PYGL,DNAJC11,FOXN2,DST,MAN1A2,PCYOX1,ZC3H11A,MLLT10,SON,PRRC2C,RIC1,SYNE2,SNX19,PPRC1,NACC2,PHF3,AFDN,TTLL4,ZEB2,CPEB4,STRN,SETD6,NFIX,DDI2,PACSIN2,VIRMA,DOT1L,TMEM63A,USP32,OTUD4,SLF2,CYLD,G3BP1,STK36,DOCK7,ZHX3,USP34,TTBK2,SMARCA2,STAT3,ARNT,FBXW11,WDR19,DHX9,CEP192,POLR1A,DDX17,ADCY9,DYNC2H1,PCNT,NFIC,CLCC1,TULP3,ITSN2,MPDZ,CCSER2,RNF169,MAPK1,RB1CC1,KLF13,WDR81,PER2,ESF1,TBC1D2B,UTRN,FBXL14,ERN1,CEP350,PIKFYVE,IL4R,MBD1,ESYT1,ZBED6,PCM1,CRK,C19orf71,KBTBD4,DENND4A,ZXDC,RREB1,UHRF1BP1,EHF,STK35,WNK1,PROSER3,EIF4ENIF1,SSH1,RSBN1L,CPSF7,ASXL1,INVS,AASS,ANKRD12,PFAS,ADNP2,KLHL5,SIK3,KIAA0586,IGF2R,UBAP2L,FNBP1,ZCCHC14,INSR,KMT2B,NBPF12,PPARA,SYNJ1,SLC12A4,ATP9B,ABL2,NPC1,MTHFD1,ERC1,TUT7,MYO18A,GTF2I,CNST,HBP1,MORC3,RO60,GON4L,SMG8,POLK,DYRK1A,AFF1,CHD6,TEX2,BDP1,PTAR1,AKAP9,AKAP1,HEATR5A,TOP3A,HECTD4,RANBP10,FNDC3B,CELF1,MIA3,SMC6,POGZ,INPP4A,AHNAK,MBTD1,HERC1,NCOR1,FER,SPOPL,NSD1,DOP1A,TAF5L,SCAF11 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000204272 | ENST00000451583 | exon_skip_430633 | chr4:82861630-82861708 | -8.10 | -0.1687 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000204272 | ENST00000451583 | exon_skip_302353 | chr19:11033766-11033865 | -11.90 | -0.2017 | SMARCA4 | ENST00000344626,ENST00000429416 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56729649-56729746 | 168.00 | -68.01 | 93 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56729369-56729452 | 164.00 | -76.56 | 77 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56729750-56729839 | 155.00 | -72.43 | 74 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56730269-56730355 | 153.00 | -61.73 | 79 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56730581-56730667 | 153.00 | -62.42 | 83 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56729557-56729649 | 148.00 | -67.31 | 91 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56729442-56729525 | 146.00 | -78.22 | 79 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000374922 | chrX:56729260-56729311 | 141.00 | -66.99 | 57 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000423617 | chrX:56729369-56729452 | 164.00 | -76.56 | 77 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000423617 | chrX:56729613-56729702 | 155.00 | -72.43 | 74 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000423617 | chrX:56729442-56729525 | 146.00 | -78.22 | 79 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000451583 | chrX:56729543-56729640 | 168.00 | -68.01 | 93 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000451583 | chrX:56729374-56729452 | 164.00 | -74.77 | 77 | NA | | ENSG00000204272 | hsa-mir-22 | ENST00000451583 | chrX:56729462-56729543 | 153.00 | -71.28 | 86 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_397436 | ENSG00000204272.9 | chrX | 56752367 | + | processed_transcript | LINC01420 | ENST00000451583.1 | lincRNA | LINC01420-004 | | LncEditing_397514 | ENSG00000204272.9 | chrX | 56758217 | + | processed_transcript | LINC01420 | ENST00000451583.1 | lincRNA | LINC01420-004 | | LncEditing_397523 | ENSG00000204272.9 | chrX | 56758223 | + | processed_transcript | LINC01420 | ENST00000451583.1 | lincRNA | LINC01420-004 |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000204272 | LncEditing_397436 | LAML | chrX_56752367_+ | 1.408500e+01 | 1.804748e+01 | -2.796128e+00 | -2.209921e+00 | 2.711068e-02 | 2.825459e-02 | DOWN | | ENSG00000204272 | LncEditing_397514 | STAD | chrX_56758217_+ | 2.369414e+01 | 2.122723e+01 | 6.304622e+00 | 2.523696e+00 | 1.161283e-02 | 1.193796e-02 | UP | | ENSG00000204272 | LncEditing_397523 | STAD | chrX_56758223_+ | 2.358614e+01 | 2.116646e+01 | 6.403712e+00 | 2.279638e+00 | 2.262916e-02 | 2.299855e-02 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000204272.9 | ENST00000374922.7 | 106 | 393 | 710 | | ENSG00000204272.9 | ENST00000423617.1 | 74 | 4 | 228 | | ENSG00000204272.9 | ENST00000451583.1 | 60 | 418 | 236 |
|
