 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MEX3D,GTF2I | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000204261 | ENST00000415067 | exon_skip_75398 | chr11:72692752-72692785 | -13.26 | -0.4911 | ARAP1 | ENST00000393605 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_81540 | chr12:42384939-42384996 | -7.53 | -0.1537 | PPHLN1 | ENST00000395568 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_368285 | chr22:29329711-29329720 | -2.93 | -0.4883 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_372419 | chr3:32449453-32449552 | -13.02 | -0.1514 | CMTM7 | ENST00000334983 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_482144 | chr8:22539468-22539498 | -8.71 | -0.5124 | PPP3CC | ENST00000240139 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_285471 | chr17:3723287-3723383 | -12.19 | -0.1741 | ITGAE | ENST00000263087 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_497057 | chr9:90867130-90867199 | -14.35 | -0.2432 | SYK | ENST00000375746,ENST00000375754 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000204261 | ENST00000415067 | exon_skip_95025 | chr12:79805591-79805768 | -20.88 | -0.1273 | PPP1R12A | ENST00000261207,ENST00000450142 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_150854 | chr17:32366664-32366757 | -12.37 | -0.1455 | ZNF207 | ENST00000321233 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_335781 | chr2:241153475-241153604 | -18.24 | -0.1495 | PPP1R7 | ENST00000234038,ENST00000407025 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_378912 | chr3:152446703-152446757 | -10.08 | -0.2585 | MBNL1 | ENST00000282486,ENST00000463374 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_379903 | chr3:184180644-184180650 | -2.18 | -0.4360 | AP2M1 | ENST00000292807 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_454626 | chr6:144827347-144827386 | -6.56 | -0.3453 | UTRN | ENST00000367545 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_482403 | chr8:27445793-27445919 | -15.29 | -0.1529 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_484062 | chr8:73030335-73030395 | -8.63 | -0.1488 | TERF1 | ENST00000276603 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_499791 | chr9:128627924-128627942 | -6.94 | -0.8675 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_353131 | chr20:58669290-58669453 | -23.17 | -0.1439 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000204261 | ENST00000415067 | exon_skip_53559 | chr10:101793912-101793998 | -12.16 | -0.1483 | OGA | ENST00000361464 | Frame-shift | | ENSG00000204261 | ENST00000415067 | exon_skip_143275 | chr16:24939363-24939597 | -30.17 | -0.1509 | ARHGAP17 | ENST00000289968 | In-frame | | ENSG00000204261 | ENST00000415067 | exon_skip_343108 | chr2:127051153-127051243 | -17.69 | -0.2211 | BIN1 | ENST00000316724 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32844486-32844583 | 203.00 | -97.89 | 91 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32844605-32844698 | 174.00 | -92.24 | 92 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32844135-32844230 | 168.00 | -96.58 | 95 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32844244-32844357 | 164.00 | -93.79 | 110 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32844390-32844485 | 159.00 | -91.53 | 81 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32845186-32845282 | 153.00 | -101.66 | 89 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32844760-32844850 | 152.00 | -77.47 | 96 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000453426 | chr6:32845083-32845175 | 151.00 | -77.70 | 89 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000458296 | chr6:32844875-32844972 | 203.00 | -97.89 | 91 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000458296 | chr6:32844475-32844561 | 187.00 | -92.22 | 79 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000458296 | chr6:32844135-32844230 | 168.00 | -96.58 | 95 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000458296 | chr6:32844779-32844874 | 159.00 | -91.53 | 81 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000458296 | chr6:32844639-32844746 | 149.00 | -87.37 | 102 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000413039 | chr6:32844712-32844809 | 203.00 | -97.89 | 91 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000413039 | chr6:32844400-32844486 | 187.00 | -92.22 | 79 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000413039 | chr6:32844831-32844924 | 174.00 | -92.24 | 92 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000413039 | chr6:32844135-32844230 | 168.00 | -96.58 | 95 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000413039 | chr6:32844482-32844583 | 165.00 | -85.44 | 104 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000413039 | chr6:32844616-32844711 | 159.00 | -91.53 | 81 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844244-32844339 | 205.00 | -94.65 | 94 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844547-32844644 | 203.00 | -97.89 | 91 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844666-32844759 | 174.00 | -92.24 | 92 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844135-32844230 | 168.00 | -96.58 | 95 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844451-32844546 | 159.00 | -91.53 | 81 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844821-32844911 | 152.00 | -77.47 | 96 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000429600 | chr6:32844345-32844437 | 140.00 | -84.37 | 89 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844221-32844320 | 189.00 | -98.54 | 82 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844770-32844856 | 187.00 | -92.22 | 79 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844380-32844475 | 176.00 | -88.06 | 96 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844135-32844230 | 168.00 | -96.58 | 95 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844852-32844953 | 165.00 | -85.44 | 104 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844986-32845081 | 159.00 | -91.53 | 81 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000412095 | chr6:32844515-32844611 | 156.00 | -100.00 | 88 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844574-32844671 | 203.00 | -97.89 | 91 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844244-32844336 | 186.00 | -88.37 | 95 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844693-32844786 | 174.00 | -92.24 | 92 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844140-32844230 | 168.00 | -93.54 | 94 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844478-32844573 | 159.00 | -91.53 | 81 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844848-32844938 | 152.00 | -77.47 | 96 | NA | | ENSG00000204261 | hsa-mir-1296 | ENST00000415067 | chr6:32844338-32844445 | 149.00 | -87.37 | 102 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000204261 | PSMB8-AS1,hsa-mir-1296,TAPBPL | LGG,UVM,MESO,SARC,THYM | | ENSG00000204261 | PSMB8-AS1,hsa-mir-1296,DTX3L | LGG,UVM,MESO,SARC,THYM | | ENSG00000204261 | PSMB8-AS1,hsa-mir-1296,RAB29 | LGG,UVM,MESO,SARC,THYM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000204261.7 | ENST00000453426.1 | 62 | 43 | 231 | | ENSG00000204261.7 | ENST00000458296.1 | 167 | 11 | 514 | | ENSG00000204261.7 | ENST00000413039.4 | 159 | 402 | 881 | | ENSG00000204261.7 | ENST00000429600.1 | 175 | 166 | 693 | | ENSG00000204261.7 | ENST00000412095.1 | 132 | 614 | 216 | | ENSG00000204261.7 | ENST00000415067.1 | 160 | 535 | 1014 |
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