 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | KRCC1,VAMP1,ARL16,TUBGCP2,PRPSAP2,LTB,CIRBP,RNF166,C1orf56,TTC31,PPP2R3B,SLF2,TDP2,ACD,RPS27A,XAB2,LMBR1L,B3GAT3,TRAPPC12,LRRC61,HSDL1,PLEKHM1,TMC8,PPP1R37,NECAB2,HIRIP3,SPI1,CD27,ALDH5A1,DENND1C,LCK,TERF2IP,CD37,DOK1,INPP5K,CCDC8,CDIP1,MOB3A,SVBP,NAA80,SCARB1,SH3BP1,RNF167,DAXX,CYB5D2,CCR7,TMEM198,ERAL1,KLRB1,TARBP2,LYRM4,POLG2,NFIA,PRCC,RING1,SLC22A17,UROD,JAK3,TMEM39B,BBIP1,FLI1,SNHG32,TRIM11,DHX58,ABHD14B,SEPTIN6,AGBL5,GABPB1,RAB3IL1,RPS6KB2,RPAIN,GPR137,MON1A,TMEM243,VTI1A,GZMM,GMIP,LMAN2L,HCLS1,C3orf62,GNAI2,ALKBH2,MEA1,SH3RF3,BIN2,BORCS6,DHODH,C18orf21,FUZ,FCMR,MLH1,VARS2,ZZEF1,TOE1,ATG4B,FYN,CHST10,PAN2,BMF,MOAP1,TMEM273,BTG2,RBFA,STK25,ARFGAP2,SEC31B,CPXM1,LNP1,HEXD,KLHL23,DVL2,TOR2A,GABARAP,PTRHD1,BUD13,RAB1B,OTUD5,ARHGEF9,HCST,JMJD4,ARHGEF2,PTK2B,NCF4,FCGRT,DNAJC4,CIZ1,SLC25A20,ATP2A3,PRR3,NICN1,CEP57,IP6K2,PPOX,CYB561A3,UCP2,NDUFAF3,GPSM3,TMEM18,CNPPD1,C20orf96,RASAL3,ADPRM,SMARCB1,APBB1,CTDSP1,WDR59,LPXN,AKNA,C11orf68,GPN2,TNK2,SESN3,CTDNEP1,RASGRP2,SPACA9,DUS2,PCBP2,UBE2J1,MAN1B1,UBL7,EFEMP2,BAP1,PHC1,HADHA,UBE2E2,NME4,CD247,ANAPC13,TCTA,NFYC,NUP210,ELMO1,MED27,METTL23,NFKBID,PATZ1,PCED1A,ABTB1,REV3L,TUSC2,NT5DC2,ELP5,EHMT2,BRF1,ARHGAP17,CYB561D1,TNFRSF13C,ZNF48,TADA2A,SCAP,ARHGDIB,IL11RA,SGF29,SUFU,PTPN6,QARS1,CLEC2D,COMMD1,TATDN2,CPNE5,NIT1,SERP2,HEMK1,RABEP2,TMEM218,NCKAP5L,FRS3,C2orf68,RBM6,PARVG,SFRP1,ORAI3,RASSF5,RAC2,ACP1,CD3D,CUEDC2,CETP,ECI2,DENND2A,SYNGAP1,PSME3IP1,TLE3,STK32C,GPSM1,CCDC71,DTNBP1,CROCC,RSAD1,SCAMP5,B3GNT9,CORO1B,PTPN7,CLDN5,FAM107A,SIGLEC10,DET1,ATAT1,SPRYD4,C11orf1,PLCG1,RASSF1,PBX2,MYO9B,NAGK,ITGB2,B4GALT3,WASHC2C,STARD3,DALRD3,CHTF18,PHF19,VPS51,UBTF,MZB1,NAT14,ACAP1,LSM10,C7orf26,CD79A,NPRL2,MEF2C,EML3,EIPR1,SNX17,ZC4H2,DCAKD,CCDC115,CLK3,TOM1L2,INCA1,ZER1,CXCL12,USP11,RFNG,TCEAL1,MARCHF8,VILL,CHST14,OSBPL7,FIBP,SEPTIN1,ACBD4,SIPA1,TERF2,CYBC1,ENDOV,TP53I3,CCND3,CLSTN3,BAD,RAMP2,RCAN1,FAM117A,FAM53B,SGSH,MIB2,ROBO4,ZNF22,PHF1,MTHFR,HIRA,ACAA1,DEAF1,HEXIM2,KLC4,SCRN2,CBX4,MAPK7,SMDT1,MFSD11,RNF25,TMEM60,BTK,COX7A2L,OGG1,MFNG,B3GALT4,LYVE1,KIF7,MOB3C,PPM1M,TIA1,INTS9,DNMT3A,CERKL,ERCC3,MEN1,MYL6B,SAYSD1,FAM234A,ARPC4,SMARCD1,VPS33B,DTX3,PLCB2,NAT9,UBA7,CPNE1,ABHD14A,LSM2,WDR6,TMEM25,COA5,SEMA4G,DGKD,C14orf93,EIF1B,MRPL43,CEP131,PDCD4,SH2D3C,NEURL4,HINFP,ATP6V0D1,IP6K1,CNTROB,WBP1,SMCO4,ANGPTL2,TAF6L,RPS29,DCTN3,RFX5,ZNF2,RRNAD1,CCDC92,KAT8,EIF3F,ARHGAP30,PAAF1,MIF4GD,TBC1D10C,HSD17B8,CD52,MUTYH,BANF1,IL6R,ASMTL,PDLIM2,LST1,B4GAT1,CBFA2T3,ARHGAP4,SELL,C2orf42,SUPT7L,HLA-DOA,ARHGAP9,GRK6,CENPT,OSGEPL1,CUL7,RBM4,ITM2A,IL34,VAMP2,ACP5,CXCR4,RBM4B,EXOG,APOM,ANAPC2,CCDC102A,BEND5,NCOA5,ARID1B,ARHGAP45,AAAS,ARSA,PSD,CXXC1,MPV17,DYRK1B,TRIM62,GPATCH3,GSTM2,ING4,REC8,UBXN1,PRAF2,GNG2,CDAN1,COX15,TRAIP,HTRA2,ITGAL,CBLN3,USP21,ZDHHC16,PTGDS,TIGD1,CNNM3,RBM10,PEMT,VEGFB,MOSPD3,TTC32,MICAL1,PRPF19,SPATA20,STMN3,FAM78A,LZTS2,TMA7,BAG6,ITGAE,XPNPEP1,KLHDC3,DUSP28,RBM5,PLXND1,PXMP2,HSD17B14,YPEL3,TTC9C,ETS1,ATP5MC2,LDB1,RXRB,PARP6,RCSD1,GNL1,WDR33,RNF5,AP5B1,P3H1,NUDT17,MAP4K2,DCAF11,DXO,PDCD7,USP20,EBI3 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | LARP1,HSP90AA1,MET,CLIP1,ERO1A,YWHAZ,PVR,LDHA | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000203497 | ENST00000420367 | exon_skip_357772 | chr20:47659398-47659452 | -9.07 | -0.1890 | SULF2 | ENST00000359930,ENST00000484875 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000203497 | ENST00000420367 | exon_skip_14329 | chr1:178892229-178892307 | -12.89 | -0.4958 | RALGPS2 | ENST00000367635 | In-frame | | ENSG00000203497 | ENST00000420367 | exon_skip_13507 | chr1:162592731-162592782 | -8.75 | -0.2823 | UAP1 | ENST00000271469,ENST00000367925 | In-frame | | ENSG00000203497 | ENST00000420367 | exon_skip_44853 | chr10:104010815-104010908 | -9.20 | -0.2000 | SLK | ENST00000369755 | In-frame | | ENSG00000203497 | ENST00000420367 | exon_skip_98384 | chr12:124327408-124327633 | -26.40 | -0.1419 | NCOR2 | ENST00000405201 | In-frame | | ENSG00000203497 | ENST00000420367 | exon_skip_146683 | chr16:85780378-85780473 | -14.79 | -0.1625 | EMC8 | ENST00000253457 | Frame-shift | | ENSG00000203497 | ENST00000420367 | exon_skip_423795 | chr4:55888887-55888932 | -7.01 | -0.3048 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000203497 | ENST00000420367 | exon_skip_64939 | chr11:112230207-112230230 | -6.11 | -0.3055 | PTS | ENST00000280362 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000203497 | ENSG00000115129 | TP53I3 | ACC,COAD,KICH,READ,TGCT | | COAD | | ENSG00000203497 | ENSG00000176894 | PXMP2 | ACC,COAD,LAML,READ,TGCT,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000198721 | ECI2 | ACC,COAD,DLBC,READ,TGCT,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000235863 | B3GALT4 | ACC,CHOL,COAD,KICH,READ,TGCT | | COAD,READ | | ENSG00000203497 | ENSG00000010671 | BTK | BLCA,CHOL,COAD,PAAD,SKCM,STAD | | COAD | | ENSG00000203497 | ENSG00000104894 | CD37 | BLCA,CHOL,COAD,DLBC,ESCA,KICH,PAAD,READ,STAD | | COAD,READ | | ENSG00000203497 | ENSG00000107317 | PTGDS | BLCA,CESC,CHOL,COAD,LIHC,PAAD,STAD | | COAD | | ENSG00000203497 | ENSG00000124772 | CPNE5 | BLCA,CESC,CHOL,COAD,HNSC,PAAD,READ,SARC,STAD,TGCT,UCS | | COAD,READ | | ENSG00000203497 | ENSG00000139193 | CD27 | BLCA,CHOL,COAD,PAAD,READ,STAD | | COAD,READ | | ENSG00000203497 | ENSG00000162894 | FCMR | BLCA,CHOL,COAD,DLBC,PAAD,READ,STAD,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000204161 | TMEM273 | BLCA,CHOL,KICH,KIRC,PAAD,READ,STAD | KIRC | READ | | ENSG00000203497 | ENSG00000115325 | DOK1 | CESC,CHOL,HNSC,KICH,KIRC,LIHC,TGCT | KIRC | | | ENSG00000203497 | ENSG00000146966 | DENND2A | CESC,COAD,KICH,PAAD,READ,TGCT | | COAD,READ | | ENSG00000203497 | ENSG00000168887 | C2orf68 | CESC,GBM,HNSC,KICH,LAML,LGG,STAD,UCS | GBM | | | ENSG00000203497 | ENSG00000170476 | MZB1 | CESC,CHOL,COAD,PAAD,READ,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000005844 | ITGAL | CHOL,COAD,PAAD,STAD,THYM | | COAD | | ENSG00000203497 | ENSG00000069493 | CLEC2D | CHOL,GBM,LGG,PAAD,STAD,UCS | GBM | | | ENSG00000203497 | ENSG00000074370 | ATP2A3 | CHOL,COAD,DLBC,KICH,LAML,LIHC,READ,STAD | | COAD,READ | | ENSG00000203497 | ENSG00000078596 | ITM2A | CHOL,COAD,PAAD,READ,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000100060 | MFNG | CHOL,DLBC,GBM,KICH,LAML,PAAD,THYM | GBM | | | ENSG00000203497 | ENSG00000100092 | SH3BP1 | CHOL,COAD,DLBC,KICH,UCS | | COAD | | ENSG00000203497 | ENSG00000102575 | ACP5 | CHOL,DLBC,KICH,KIRC,KIRP | KIRP | | | ENSG00000203497 | ENSG00000105246 | EBI3 | CHOL,COAD,ESCA,KICH,PAAD,STAD | | COAD | | ENSG00000203497 | ENSG00000107562 | CXCL12 | CHOL,COAD,KICH,PAAD,READ,TGCT,UCS | | COAD,READ | | ENSG00000203497 | ENSG00000110934 | BIN2 | CHOL,COAD,PAAD,READ,STAD,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000120899 | PTK2B | CHOL,COAD,PAAD,READ,TGCT,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000120913 | PDLIM2 | CHOL,COAD,KICH,PAAD,THYM | | COAD | | ENSG00000203497 | ENSG00000125457 | MIF4GD | CHOL,DLBC,GBM,HNSC,KICH,LGG,PAAD,TGCT,THYM | GBM | | | ENSG00000203497 | ENSG00000126353 | CCR7 | CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000203497 | ENSG00000162144 | CYB561A3 | CHOL,COAD,PAAD,READ,STAD,TGCT,UVM | | COAD | | ENSG00000203497 | ENSG00000169442 | CD52 | CHOL,COAD,KICH,PAAD,READ,STAD,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000172985 | SH3RF3 | CHOL,KIRC,LIHC,TGCT,THCA,UCS | KIRC | | | ENSG00000203497 | ENSG00000177352 | CCDC71 | CHOL,DLBC,GBM,LAML,UVM | GBM | | | ENSG00000203497 | ENSG00000180353 | HCLS1 | CHOL,COAD,KICH,PAAD,STAD,THYM | | COAD | | ENSG00000203497 | ENSG00000184113 | CLDN5 | CHOL,COAD,KICH,PAAD,STAD,TGCT | | COAD | | ENSG00000203497 | ENSG00000197540 | GZMM | CHOL,COAD,LIHC,PAAD,STAD | | COAD | | ENSG00000203497 | ENSG00000198771 | RCSD1 | CHOL,COAD,KICH,PAAD,READ,SKCM,STAD,TGCT,THYM,UCS | | COAD,READ | | ENSG00000203497 | ENSG00000198821 | CD247 | CHOL,COAD,PAAD,READ,STAD,THYM | | COAD | | ENSG00000203497 | ENSG00000205744 | DENND1C | CHOL,COAD,PAAD,STAD,THYM,UVM | | COAD | | ENSG00000203497 | ENSG00000074755 | ZZEF1 | COAD,LGG,PAAD,READ,TGCT | | COAD,READ | | ENSG00000203497 | ENSG00000089486 | CDIP1 | COAD,DLBC,LAML,PAAD,UCS,UVM | | COAD | | ENSG00000203497 | ENSG00000095539 | SEMA4G | COAD,KICH,LAML,READ,TGCT,UCS,UVM | | COAD | | ENSG00000203497 | ENSG00000104081 | BMF | COAD,GBM,TGCT,THCA,THYM | GBM | COAD | | ENSG00000203497 | ENSG00000104332 | SFRP1 | COAD,KICH,READ,TGCT,THCA | | COAD,READ | | ENSG00000203497 | ENSG00000111802 | TDP2 | COAD,KICH,PAAD,READ,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000133800 | LYVE1 | COAD,KICH,PAAD,READ,TGCT | | COAD,READ | | ENSG00000203497 | ENSG00000136059 | VILL | COAD,DLBC,READ,TGCT,THCA,THYM,UCS,UVM | | COAD,READ | | ENSG00000203497 | ENSG00000137171 | KLC4 | COAD,HNSC,KICH,LAML,LGG,TGCT,UVM | | COAD | | ENSG00000203497 | ENSG00000159200 | RCAN1 | COAD,KICH,READ,TGCT,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000160445 | ZER1 | COAD,LAML,LIHC,READ,TGCT,UVM | | COAD | | ENSG00000203497 | ENSG00000160712 | IL6R | COAD,KICH,PAAD,READ,STAD | | COAD,READ | | ENSG00000203497 | ENSG00000165406 | MARCHF8 | COAD,GBM,KICH,PAAD,READ,UVM | | COAD,READ | | ENSG00000203497 | ENSG00000166484 | MAPK7 | COAD,GBM,KICH,LGG,LIHC,READ,UVM | GBM | | | ENSG00000203497 | ENSG00000170296 | GABARAP | COAD,ESCA,HNSC,KICH,LGG,PAAD,STAD,TGCT,UVM | | COAD | | ENSG00000203497 | ENSG00000172086 | KRCC1 | COAD,KICH,READ,TGCT,UCS | | COAD,READ | | ENSG00000203497 | ENSG00000172661 | WASHC2C | COAD,GBM,KICH,PAAD,UCS | | COAD | | ENSG00000203497 | ENSG00000175662 | TOM1L2 | COAD,KICH,READ,TGCT,UVM | | COAD,READ | | ENSG00000203497 | ENSG00000178537 | SLC25A20 | COAD,KICH,READ,TGCT,THYM | | COAD,READ | | ENSG00000203497 | ENSG00000220205 | VAMP2 | COAD,HNSC,PAAD,READ,TGCT | | COAD,READ | | ENSG00000203497 | ENSG00000157368 | IL34 | ESCA,KIRC,KIRP,LIHC,PAAD,STAD | KIRC | | | ENSG00000203497 | ENSG00000166002 | SMCO4 | GBM,HNSC,KIRC,KIRP,READ | GBM | | | ENSG00000203497 | ENSG00000189046 | ALKBH2 | GBM,HNSC,LAML,LGG,THCA | GBM | | | ENSG00000203497 | ENSG00000131089 | ARHGEF9 | HNSC,PAAD,READ,TGCT,THCA | | READ | | ENSG00000203497 | ENSG00000073060 | SCARB1 | KIRP,LAML,LGG,TGCT,THCA | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000203497 | ENST00000420367 | MET | ENSG00000105976 | ENST00000318493 | -0.1065 | 1 | COAD,READ | - | | ENSG00000203497 | ENST00000420367 | MET | ENSG00000105976 | ENST00000422097 | -0.1827 | 651 | COAD,READ | - | | ENSG00000203497 | ENST00000420367 | ERO1A | ENSG00000197930 | ENST00000556223 | -0.1337 | 1 | COAD | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000203497.2 | ENST00000420367.1 | 44 | 316 | 182 |
|
