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lncRNA: ENSG00000196741

Summary for LINC01560

Gene summary

Gene information	Ensembl ID	ENSG00000196741
	Gene symbol	LINC01560
	Gene name	long intergenic non-protein coding RNA 1560
	HGNC	27333
	Entrez ID
	Gene type	lincRNA
	Synonyms	Xp11.3\|LINC01560
	UniProtAcc	Q8TB33

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Structure and expression level for LINC01560

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000196741	1.744964e+02	1.005808e+00	2.889173e-01	3.481299e+00	4.989870e-04	2.045455e-03	UP	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000196741	4.874083e-01	6.842397e-04	CHOL	1.267501e-03

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lncRNA-Protein interaction for LINC01560

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for LINC01560

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,CEBPZ,NCOA2,DNMT1,XRN1,ZNF16,ILF3,MYCN,NOL8,PBX2,RBM39,EDC3,KLF12,ZBTB4,GLYR1,GRSF1,KLF7,LCORL,MZF1,MYSM1,NRF1,CSDE1,RBM23,RFX5,AKAP8,ZNF2,ARID2,ZXDC,SUGP2,RARB,DMTF1,ELF1,MAZ,VEZF1,TCF20,RBM27,ZNF70,BAZ2A,ZNF77,ZNF24,DDX52,BACH2,RBM28,ZNF74,ATF6B,TBP,GABPA,IKZF5,NFKB1,ZBED4,MEF2C,DDX55,KMT2B,TET3,ZBTB5,ZFP14,ZXDA,RNPC3,ZFP69,BARD1,ATMIN,THOC1,ZNF25,LARP7,MNT,TRNT1,PNPT1,CNOT4,SON,CHTOP,CWC22,DDX59,ZZZ3,ZBED5,SCAF4,CENPT,TTC14,ZBED3,RBM4,SMAD9,CREB1,MEX3C,RC3H1,PCBP2,EEA1,ZNF44,ZNF91,ZFP91,RBMX,AGO2,RBM4B,U2AF2,CSTF3,RBMS3,TIGD6,RBM26,TCFL5,ZIK1,RFX2,RBM14,RNPS1,PURB,ADNP,GZF1,NCBP1,MYEF2,PPIL4,TERF2,MBD1,IKZF4,PUS7L,ASH1L,NFYC,CLOCK,CASC3,FUBP1,ARNT2,ZFP30,SP4,RBM43,CPSF7,KLF11,PRDM4,LIN54,UBR5,THAP9,THOC2,DDX6,TSN,ZBTB6,ZNF34,ZNF71,THAP6,PATZ1,DDX17,E2F5,CSTF1,SRRM2,PUS7,RFX7,E2F6,PRR12,FOXN3,AQR,ZNF22,SP2,FMR1,LCOR,MECP2,FOXJ3,KLF3,PURA,PHAX,ZNF41,MEX3B,ZC3H8,TTF1,RBM41,THAP1,SART3,NOL9,DZIP3,FOXM1,SRBD1,ILF2,IRF2,MEX3A,ZFP62,ZNF48,ZNF93,SMAD3,PAIP1,WIZ,ZNF28,RBM3,ZNF45,CELF1,SCMH1,PSPC1,KRR1,TMF1,ELK4,TIGD1,RBM45,NFXL1,BACH1,PRDM2,DDX51,E2F4,MBD4,RBM18,UNC50,NFIB,FOXP1,SRSF2,MBD6,DDX31,SALL2,MYNN,TFCP2,PATL1,ZMAT1,ZNF83,ELK1,QKI,ZFR,ZNF3,RFX3,NXF1,STAU1,ZFX,ZNF8,NAF1,NKRF,NR2C2,EIF2D,SYNJ1,TEAD2,DDX11,PUS10,PUM1,GPBP1,C1D,SOX12,ARNT,KDM2B,RBM6,ZNF14,KHDC1,G3BP2,RBM48,LSM11,GMEB2,ZFHX3,DZIP1,PUM2,XPO1,RBM5,BRCA1,ELF2,SMAD4,RBMS1,NFYB,ZNF43,PTBP3,ZFP28,SP3,ZNF17,SRCAP,ZNF84,DDX42,BAZ2B,RXRB,ZHX2,TRA2A,CSTF2,KMT2A,ZEB2,SRSF7,HINFP,AKAP1,XPA,NR2C1,TFDP2,DACH1,ZFP3,ADAT1,SFPQ,ETV1,TET2,TDRKH,RBM33,ATF2,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

E2F5,FOXP1,TEAD2,MECP2,BAZ2A,ZMAT1,SMAD1,REST,ZNF3,CSTF1,DDX6,PUM2,PPIL4,DHX30,RBM3,EIF2D,PBX2,ZNF70,ZNF30,KLF7,TBP,DDX17,DDX52,ATF1,MBNL1,ZFR,THOC2,ZNF14,ADAT1,TIGD6,MYNN,ZNF83,MEX3A,TET2,AGO4,STAU1,LCORL,AGO1,MZF1,E2F6,U2AF2,DKC1,ZNF45,SRSF5,DNMT1,ZFHX3,NFX1,AKAP1,ZNF28,ZNF48,NRF1,ELF1,UBR5,GTF2I,TFCP2,RCAN3,TERF1,FOXJ3,CPSF7,G3BP2,PATL1,RBM6,ZNF71,RBMS3,PCBP2,FOXJ2,DDX1

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC01560

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000196741	ENST00000624822	exon_skip_62840	chr11:70421469-70421580	-15.70	-0.1847	CTTN	ENST00000301843	In-frame
ENSG00000196741	ENST00000624822	exon_skip_150854	chr17:32366664-32366757	-10.83	-0.1371	ZNF207	ENST00000321233	In-frame
ENSG00000196741	ENST00000624822	exon_skip_330008	chr2:135641535-135641790	-25.39	-0.1114	R3HDM1	ENST00000264160	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000196741	ENST00000624822	exon_skip_353954	chr20:63875815-63875875	-7.07	-0.1504	TPD52L2	ENST00000346249	In-frame
ENSG00000196741	ENST00000624822	exon_skip_139422	chr16:89114338-89114487	-21.86	-0.1529	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000196741	ENST00000624822	exon_skip_83419	chr12:53467804-53467843	-7.09	-0.2445	PCBP2	ENST00000439930	In-frame
ENSG00000196741	ENST00000624822	exon_skip_436498	chr5:96729152-96729209	-8.14	-0.3876	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000196741	ENST00000624822	exon_skip_509943	chrX:47175018-47175092	-12.98	-0.1909	RBM10	ENST00000377604	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000196741	hsa-mir-185	ENST00000357412	chrX:47484138-47484226	196.00	-83.50	87	NA
ENSG00000196741	hsa-mir-185	ENST00000357412	chrX:47483706-47483788	162.00	-87.81	86	NA
ENSG00000196741	hsa-mir-185	ENST00000624822	chrX:47484138-47484226	196.00	-83.50	87	NA
ENSG00000196741	hsa-mir-185	ENST00000624822	chrX:47483706-47483788	162.00	-87.81	86	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47483888-47483980	175.00	-69.32	84	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47483676-47483759	170.00	-84.28	85	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47483979-47484070	162.00	-71.32	87	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47484649-47484743	153.00	-64.68	94	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47484395-47484474	148.00	-71.65	78	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47483788-47483873	145.00	-70.11	81	NA
ENSG00000196741	hsa-mir-22	ENST00000357412	chrX:47484114-47484202	140.00	-74.33	76	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47483888-47483980	175.00	-69.32	84	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47483676-47483759	170.00	-84.28	85	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47483979-47484070	162.00	-71.32	87	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47484649-47484743	153.00	-64.68	94	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47484395-47484474	148.00	-71.65	78	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47483788-47483873	145.00	-70.11	81	NA
ENSG00000196741	hsa-mir-22	ENST00000624822	chrX:47484114-47484202	140.00	-74.33	76	NA
ENSG00000196741	hsa-mir-3614	ENST00000357412	chrX:47483930-47484023	164.00	-78.62	89	NA
ENSG00000196741	hsa-mir-3614	ENST00000357412	chrX:47483595-47483684	156.00	-82.64	79	NA
ENSG00000196741	hsa-mir-3614	ENST00000357412	chrX:47483798-47483881	153.00	-72.79	83	NA
ENSG00000196741	hsa-mir-3614	ENST00000357412	chrX:47483707-47483799	150.00	-82.23	89	NA
ENSG00000196741	hsa-mir-3614	ENST00000357412	chrX:47484111-47484198	144.00	-78.06	86	NA
ENSG00000196741	hsa-mir-3614	ENST00000624822	chrX:47483930-47484023	164.00	-78.62	89	NA
ENSG00000196741	hsa-mir-3614	ENST00000624822	chrX:47483595-47483684	156.00	-82.64	79	NA
ENSG00000196741	hsa-mir-3614	ENST00000624822	chrX:47483798-47483881	153.00	-72.79	83	NA
ENSG00000196741	hsa-mir-3614	ENST00000624822	chrX:47483707-47483799	150.00	-82.23	89	NA
ENSG00000196741	hsa-mir-3614	ENST00000624822	chrX:47484111-47484198	144.00	-78.06	86	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47483928-47484000	201.00	-65.09	79	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47484031-47484117	177.00	-60.14	86	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47484180-47484270	177.00	-56.84	80	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47483805-47483875	167.00	-58.44	80	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47483705-47483792	166.00	-73.30	81	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47484353-47484434	164.00	-57.26	82	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47484688-47484773	160.00	-63.25	80	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000357412	chrX:47484568-47484648	152.00	-57.07	77	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47483928-47484000	201.00	-65.09	79	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47484031-47484117	177.00	-60.14	86	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47484180-47484270	177.00	-56.84	80	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47483805-47483875	167.00	-58.44	80	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47483705-47483792	166.00	-73.30	81	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47484353-47484434	164.00	-57.26	82	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47484688-47484773	160.00	-63.25	80	NA
ENSG00000196741	hsa-mir-29b-1	ENST00000624822	chrX:47484568-47484648	152.00	-57.07	77	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47483929-47484000	194.00	-56.44	79	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47483572-47483638	182.00	-56.45	63	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47483803-47483875	177.00	-56.51	77	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47483725-47483798	174.00	-68.09	75	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47484015-47484102	166.00	-56.74	84	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47484677-47484758	165.00	-60.25	72	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47484569-47484652	160.00	-55.31	76	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000357412	chrX:47483640-47483729	159.00	-67.88	84	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47483929-47484000	194.00	-56.44	79	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47483572-47483638	182.00	-56.45	63	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47483803-47483875	177.00	-56.51	77	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47483725-47483798	174.00	-68.09	75	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47484015-47484102	166.00	-56.74	84	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47484677-47484758	165.00	-60.25	72	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47484569-47484652	160.00	-55.31	76	NA
ENSG00000196741	hsa-mir-29b-2	ENST00000624822	chrX:47483640-47483729	159.00	-67.88	84	NA

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Variants for LINC01560

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000196741	LINC01560,hsa-mir-3614,WDR35	SKCM,TGCT,CHOL,MESO,THYM
ENSG00000196741	LINC01560,hsa-mir-185,MAML2	SKCM,KICH,TGCT,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,WDR33	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,MSANTD2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,E2F5	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,ZNF22	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,MED30	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000196741	LINC01560,hsa-mir-22,RXRB	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,DDX42	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,ATAT1	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,USP21	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,YTHDC1	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SFPQ	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,NRF1	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,PM20D2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RING1	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,ZNF7	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,BRD2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,NAA16	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,FAM117B	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,NCOA5	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SRSF3	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,EHMT2	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SRSF6	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RBM4B	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,EXOSC2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,PDE9A	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,VEZF1	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,PAXBP1	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,LUC7L3	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,ING5	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,CLK2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,IRF2BP2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SNRNP48	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,PCID2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,KHDC4	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,CEP95	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,MBTD1	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,TIA1	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RBBP6	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,CTPS2	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SBK1	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,TRIM13	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,POLG2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,NONO	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000196741	LINC01560,hsa-mir-22,MYEF2	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RBMX	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,FBXO46	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RBM5	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RCOR3	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,RGL2	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,CHTOP	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,TFAP4	SKCM,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,POGZ	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,CTDSPL2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,PRR3	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,KDM5B	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,ING4	SKCM,KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SOX4	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,TDRP	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,N4BP2L2	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,MTA1	SKCM,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,PRPF39	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,WBP1	KICH,TGCT,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,ZBTB5	SKCM,KICH,CHOL,LGG,KIRP
ENSG00000196741	LINC01560,hsa-mir-22,SMAD4	SKCM,KICH,TGCT,CHOL,LGG,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000196741.5	ENST00000357412.2	73	188	409
ENSG00000196741.5	ENST00000624822.1	94	34	318

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential