 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | AGAP6,RBM6,ADAMTS10,TRIM66,IDUA,HSF4,LENG8,NOXA1,PGGHG,RBM5,TAZ,SPG7,MYL5,GALT,TTLL3,RRNAD1,ACBD4,RSRP1,PIGL,LRSAM1,PARP6,IL11RA,SCNN1D,PLA2G6,CSAD,GPS2,MAP3K12,EME2,DCAF8,TTC32,APBB3,ULK3,AMY2B,PHYKPL,ZMAT1,PNISR,HEMK1,EXD3,ACAP3,CTC1,NPEPL1,CCDC191,RNPC3,ERMARD,MRNIP,CCDC57,INCA1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000196668 | ENSG00000113108 | APBB3 | BRCA,DLBC,KIRC,KIRP,LGG | KIRC | | | ENSG00000196668 | ENSG00000132522 | GPS2 | BRCA,DLBC,KIRC,KIRP,LGG | KIRC,KIRP | | | ENSG00000196668 | ENSG00000139625 | MAP3K12 | BRCA,DLBC,KIRC,KIRP,LGG,OV | KIRC,KIRP | | | ENSG00000196668 | ENSG00000161010 | MRNIP | BRCA,KIRC,KIRP,LGG,OV | KIRC | | | ENSG00000196668 | ENSG00000175309 | PHYKPL | BRCA,DLBC,KIRC,KIRP,LGG,OV | KIRC | | | ENSG00000196668 | ENSG00000214021 | TTLL3 | BRCA,DLBC,KIRC,KIRP,LGG,OV | KIRC,KIRP | | | ENSG00000196668 | ENSG00000102125 | TAZ | DLBC,KIRC,KIRP,LGG,THYM | KIRC,KIRP | | | ENSG00000196668 | ENSG00000117616 | RSRP1 | DLBC,KIRC,KIRP,LGG,OV | KIRC | | | ENSG00000196668 | ENSG00000127415 | IDUA | DLBC,KIRC,KIRP,LGG,THYM | KIRC,KIRP | | | ENSG00000196668 | ENSG00000139631 | CSAD | DLBC,KIRC,KIRP,LAML,LGG,OV | KIRC | | | ENSG00000196668 | ENSG00000142303 | ADAMTS10 | DLBC,KIRC,KIRP,LAML,LGG | KIRC,KIRP | | | ENSG00000196668 | ENSG00000167615 | LENG8 | DLBC,KIRC,KIRP,LGG,OV | KIRC | | | ENSG00000196668 | ENSG00000197774 | EME2 | DLBC,KIRC,KIRP,LGG,THYM | KIRC,KIRP | | | ENSG00000196668 | ENSG00000204149 | AGAP6 | DLBC,KIRC,KIRP,LGG,OV | KIRC,KIRP | | | ENSG00000196668 | ENSG00000215375 | MYL5 | DLBC,KIRC,KIRP,LGG,THYM | KIRC,KIRP | | | ENSG00000196668 | ENSG00000142102 | PGGHG | KIRC,KIRP,LGG,OV,THYM | KIRC,KIRP | | | ENSG00000196668 | ENSG00000162572 | SCNN1D | KIRC,KIRP,LAML,LGG,THYM | KIRC,KIRP | | | ENSG00000196668 | ENSG00000240038 | AMY2B | KIRC,KIRP,LAML,LGG,OV,THYM | KIRC,KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000196668.3 | ENST00000480237.1 | 92 | 590 | 312 | | ENSG00000196668.3 | ENST00000470091.1 | 150 | 125 | 577 | | ENSG00000196668.3 | ENST00000489452.1 | 62 | 334 | 146 | | ENSG00000196668.3 | ENST00000477702.1 | 103 | 233 | 541 |
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