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lncRNA: ENSG00000185904 |
Summary for LINC00839 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000185904 | Gene symbol | LINC00839 |
| Gene name | long intergenic non-protein coding RNA 839 | |
| HGNC | 28269 | |
| Entrez ID | 84856 | |
| Gene type | lincRNA | |
| Synonyms | 10q11.21|LINC00839 | |
| UniProtAcc |
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Structure and expression level for LINC00839 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000185904 | 3.598505e+02 | 2.372865e+00 | 4.475390e-01 | 5.302029e+00 | 1.150000e-07 | 1.270000e-06 | UP | BLCA |
| ENSG00000185904 | 2.678558e+02 | 2.528519e+00 | 2.935424e-01 | 8.613810e+00 | 7.070000e-18 | 1.200000e-16 | UP | HNSC |
| ENSG00000185904 | 1.996039e+02 | -2.340568e+00 | 4.562030e-01 | -5.130540e+00 | 2.890000e-07 | 1.370000e-06 | DOWN | KIRP |
| ENSG00000185904 | 1.796394e+02 | 4.259703e+00 | 1.176437e+00 | 3.620850e+00 | 2.936360e-04 | 4.386061e-03 | UP | PCPG |
| ENSG00000185904 | 3.970710e+02 | 1.376020e+00 | 2.329109e-01 | 5.907924e+00 | 3.460000e-09 | 1.150000e-08 | UP | LUSC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000185904 | -5.107827e-01 | 3.150844e-07 | KICH | 1.028170e-06 |
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lncRNA-Protein interaction for LINC00839 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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