 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | EEF1AKMT3,ELMO2,CDK2AP1,TSPYL2,KRCC1,VAMP1,HELQ,CPLANE1,USP22,ZSWIM9,FOXJ1,PRPSAP2,BICD2,CSNK1G3,MFSD8,ATL2,KRT10,IFT22,DNAJC27,WDFY1,BRD1,WDR89,FASTKD3,IFT52,CIRBP,DUOX1,IPP,DYNC2LI1,MZF1,TWNK,TTC31,CNOT9,SIRT3,MAPK8IP3,MID1,SUGP2,VAMP4,FKBP7,TANK,N4BP2L2,SLF2,L3HYPDH,DMTF1,RNF34,HSPA14,NUP62,RFC1,TMEM184C,FAM193A,NSD3,UNKL,HLTF,DCK,ING1,MAK16,SENP1,MORF4L2,GPATCH11,ZNF24,TRAPPC12,PTPRS,FAM120AOS,WDCP,SLC25A12,ULK3,PIGX,BCL7A,IRAK4,STAT2,PLRG1,SLC25A40,ZFP14,TULP3,RHOT1,CENATAC,EFS,WDR5B,ST7L,SAFB2,KLHL28,KCTD13,KDM5B,MSANTD2,TUBGCP6,SNAPC1,CCDC14,FAM200A,LZTFL1,ABITRAM,COG6,RNF38,THAP2,MIPEP,PIAS3,CLK4,COMMD2,TVP23B,USP30,FAM133B,DEK,ZBED5,GNPAT,INPP5B,XXYLT1,IRX2,ACTR6,UBA2,TBK1,TTC14,IK,KLHL42,KNTC1,SIN3A,PPP1R3D,CREB1,MEX3C,HMGXB3,SUDS3,SMIM15,GKAP1,ADSS2,EXOC8,PPIP5K2,DPY19L4,FAM104B,C19orf44,SRSF4,FBXO34,STRN3,RNF167,KIF16B,ARHGAP19,PPP1R13L,SMAD2,SCYL3,DNAJC2,FAM220A,PPIP5K1,XPO7,CYB5D2,OGT,RCCD1,LIX1L,NOD1,IGIP,C20orf194,CBX3,RFX2,COX19,CLK2,GZF1,CARNMT1,MYEF2,PPIL4,RNF19A,PPP1R11,ARID4B,ASH1L,BLZF1,POLG2,DHX34,TUT4,SLC22A17,AP3M2,PSIP1,IFT81,FAN1,CEP89,RIC8B,ANAPC10,RPAP3,FANCE,MBD2,MOCS3,BBIP1,TRIM37,OSGEP,THOC2,CTC1,CLK1,TMEM231,ZBTB6,ITGB3BP,GABPB1,RABL2A,CTNS,H3-3A,ARMC10,GTF3C2,OFD1,ACYP1,FBXO38,SEPTIN10,RBBP4,SLC25A29,CEP19,FCHSD1,UBE2H,IFT172,CIART,HCFC2,MSH6,FOXJ3,BMI1,SLC4A1AP,COPS3,BNIP3L,CFAP298,MIS12,DERL2,CBX1,MIER1,SKP2,NCOA6,ANO8,HGS,RSRC2,TTC21B,TTF1,SNX27,GET1,NPAT,FANCF,NAPB,USP46,HERPUD2,AP1G1,C4orf46,NAA25,JPT2,PNMA8A,PSMD10,ZADH2,APBA3,UTP23,MAP6,NEMP1,CBX7,SETD5,ZFP62,PRKX,C17orf97,ALKBH2,GTDC1,C9orf72,PAIP1,ZBED8,CHIC1,ORMDL1,CHD9,BRAF,ZNF45,YTHDC1,TOPBP1,COQ7,FAM53C,RNF24,COQ6,DDX51,DONSON,NKAPD1,FUZ,OSBPL3,FGD1,SSBP2,PRPF38A,SBNO1,SRSF2,CUL9,POGLUT1,BTF3L4,CAMSAP1,TFCP2,PASK,AIDA,ZZEF1,DHX35,SUPT5H,ABHD16A,SUPT20H,CCDC191,NXF1,DCUN1D2,UBXN2A,TAF5L,TNKS,UQCC1,FIGNL1,TCTN3,C6orf62,NR2C2,PAN2,PNMA1,SIX5,LRTOMT,SLFN13,WASF1,BUB3,PPP4R2,MOAP1,GIGYF1,STX6,ZNF14,RMI1,FAM193B,SCRN3,STAG2,FAM114A2,ARHGAP44,PKN2,BRD2,LSM11,TMCO6,NOL3,SSX2IP,XPO1,DPYSL2,COG7,NRDE2,CDK17,METTL4,ATG2B,CIR1,DCLRE1A,ZFC3H1,CLCN3,MTMR4,MBTD1,MAP2K4,NFYB,DMAC2L,ECD,ATXN2L,SP3,SEPSECS,FBXO21,TNPO2,CHSY1,DVL2,DDX42,VCPKMT,TIFA,TTC3,ARHGEF11,EIF4A1,TMEM14A,PAFAH1B1,MKRN2,LYSMD1,CDK7,AHDC1,KAT14,FAM204A,CUL1,PALB2,EIF2AK2,ABCE1,TDRP,PGGT1B,TSR1,ATF7IP,TMEM248,ZFP3,SHOC2,GCA,RCHY1,MARCHF6,SWT1,BRD3,RSPH1,MED4,CFAP53,IGSF9,CUL3,MOSPD2,ELAC2,IQCC,RWDD4,ZNF30,SKA2,KBTBD6,SNX25,AMMECR1L,TMEM168,OARD1,RAB28,TMEM254,ATM,FAM172A,ADO,ARHGEF2,SNX33,USP27X,IFT57,FANCL,ILF3,TTC17,BRAP,CDK13,CIZ1,SMG7,LENG8,MED7,TNFAIP1,SH2B1,SMURF2,DCLRE1B,PHKA2,RANBP3,FAM98C,CSNK1G1,CEP57,CEP68,MIB1,HOOK3,NEK11,IP6K2,PPOX,BBOF1,FAM168B,METAP1,WDR81,CABIN1,SPICE1,WDR53,PPWD1,YWHAE,RELCH,RNF14,RSBN1,NDRG3,VEZF1,MLLT6,TRMT6,PRPF40A,RBM27,ATG12,PIBF1,AHI1,CLASP1,NCSTN,LAMTOR3,INO80D,KIAA1191,PHF23,ICE2,AGK,SMCR8,ASTE1,ENOPH1,TMED4,CRLF3,CNOT6L,C20orf96,PHF7,DDX55,ADPRM,WDR37,MNS1,CASP2,KRIT1,FAM111A,COG5,GCFC2,THOC1,ANKMY1,ZNF25,MAML3,PPP2CB,NXN,RAB36,NUMA1,PHF12,EPN2,LANCL1,RPA1,KIAA1143,ZZZ3,DENND6A,RALGPS2,ODR4,ZMYM5,IFT140,PPP3CB,UNG,IFT74,CSNK1D,DRC3,SNRNP48,SPACA9,DSC3,RC3H1,PCID2,ZNF44,BCOR,CDK20,RPA2,SLC12A6,TOP3A,TMEM116,TRIM13,UFL1,TAF7,FGFR1OP2,TAF8,PARS2,LTO1,GRPEL2,KANSL2,NUDT12,PHC1,METAP1D,XIAP,FAM189B,RAI1,ELP4,ATP7A,BCLAF3,TMEM43,PABIR1,DNAJB14,KIFBP,NFYC,MLF1,NUDCD3,IFT80,BBS2,CTBS,ABRAXAS1,CEP83,ZCCHC14,CD47,NEK9,HMGB1,GGNBP2,BRMS1L,EP400,LIN54,NATD1,UBN2,GLT8D1,DDX6,TSN,C17orf75,LRIG2,PPP1R13B,PARP2,FBXO8,PHF10,CDH24,FBXO3,PATZ1,ABHD18,SESTD1,LCMT2,ZBTB2,PCED1A,REV3L,EVC,WDR47,IWS1,SMCHD1,PRR12,POLR2A,CREBRF,PHF13,MECP2,CHRNB1,SMYD4,IKBKB,ABCA3,NBPF11,AGTPBP1,UBAP2L,ACIN1,ZNF41,ARHGEF9,ZC3H8,METTL16,SART3,THAP1,ENOSF1,MAU2,DZIP3,WDR82,RAB2B,TTC8,ANKRD49,PAXBP1,MBLAC2,IFNLR1,PGBD1,APPL2,GPR27,GANC,MEX3A,FNTA,COA1,MASTL,KCTD18,TADA2A,FNBP4,CEP85,GTF2A1,LRRC56,NUBPL,INPP5E,RAB33B,NEK8,SUFU,MLLT10,BHLHB9,PEX11A,CHD2,FLCN,MINDY3,USP40,MED23,NVL,UNC50,ATG14,PWWP2A,ZSWIM1,FIZ1,NBPF15,BAG5,MYNN,SUMO2,METTL14,LTB4R,KIFC2,OTUD4,ANKLE2,SLC39A10,CBLL1,NCKAP1,MIER3,UPF3B,ZFR,BTBD7,ROCK2,TMEM218,IFT20,ALKBH4,MED29,NCKAP5L,GSAP,C18orf32,GPBP1,WAC,FBXL8,CNOT7,MRE11,FAM120C,PSMG2,RBM6,EHMT1,TRMT13,ZNF862,TTBK2,AKTIP,PDS5B,CDK19,ARHGEF19,CCDC82,ARID4A,FXR2,RNF115,SYF2,CRMP1,DCTN4,CCDC142,LYRM7,SNX6,SMAD4,AASDHPPT,PAXIP1,UEVLD,NLRP1,VCPIP1,CNPY4,SYNE2,CBX5,ANP32E,KIF3A,NSL1,RYK,EPM2AIP1,TYW1,SCAMP1,GSTA4,CLIP4,SYNGAP1,RBBP9,ANKMY2,ZHX2,SRR,FANCC,MAML1,WDR27,GTF3C4,FAM104A,SFXN3,HECTD4,BBS7,B9D1,YY1AP1,ANKFY1,BSDC1,KHDC4,NCK1,PLXNB1,RSAD1,PPP1R26,NOC3L,HPS4,ATPAF2,PLD6,PCGF6,PNISR,SFPQ,SEPTIN8,CEPT1,THAP5,UNC119B,DNAJC9,MCM4,UBE3B,CARD8,TAF6,AMZ2,NUCKS1,NCBP2,LMLN,ATAD2B,ZNF10,SRSF7,GOPC,NISCH,DET1,CCDC97,ATAT1,LRIF1,ABCB10,MORN2,MED17,RNF149,NMNAT3,PAPSS1,PREPL,BCL2,PLCG1,RCBTB1,ESCO1,CEP120,PBX2,TMX3,ZBTB4,TMEM17,ANGEL2,BICRA,EVC2,PKP4,MDM1,WASHC2C,STMP1,IQCE,KDM3B,RIT1,POC5,MYSM1,HES1,MED13L,RBM23,FCHO2,AKAP8,NLGN2,METTL15,TTC23,CEP250,ARID2,FBXO41,DARS1,SMG6,STAM2,TTC5,ODAD4,UIMC1,DTD2,DPY19L2,C12orf29,NEK4,SMARCE1,MALT1,EFNB3,RBBP8,TAF1D,WDR12,KATNBL1,MKS1,TAF4,C1orf35,CEP95,DZANK1,CCDC174,TTI1,KIAA0895,SPIN3,NME5,DDX52,USP4,TASP1,IFT88,ATF6B,COX11,TBP,GABPA,SLX4IP,ZCWPW1,DPY19L1,IRF2BPL,SUV39H2,EFNA4,MIS18A,AFTPH,GATAD1,CCNL2,RUNDC1,URB2,DHFR2,DCAKD,TTC30B,XPC,EFCAB7,TTC19,BNIP2,FBXO46,CCDC115,RNPC3,TOM1L2,C14orf28,ANKRD10,ERLIN2,CCDC74B,TENT4A,OBI1,NECAP1,INCA1,SLC25A35,UBXN7,LRCH3,NUSAP1,MNT,GABBR1,CNOT4,CHTOP,N6AMT1,DOP1A,FAM89A,KIAA2026,KANSL3,DHX57,KMT2C,CCSAP,PRKACA,STAU2,SIKE1,MARCHF8,RLIM,MC1R,KLHL29,CCNT2,COX18,RRM1,PTCD3,INTS7,ORC3,CENPQ,KAT2A,PHTF2,NFRKB,CHD6,RAD1,ACBD4,TMEM209,BRWD1,LRRC23,U2AF2,ANKS6,ARL13B,CSTF3,CHD3,TIGD6,TRAPPC11,RBM26,ARMCX3,CLDND1,PLA2G6,NAPEPLD,CSNK1E,CAMK2G,PURB,SPATA6,TUBGCP5,RBM25,C1orf131,DCP1B,FBXW7,CEBPZOS,RO60,TBCK,DGCR2,CEP20,SPATA2,ENDOV,BBS10,KLHL9,MLH3,SP4,SPRTN,RARG,RBM43,SETD6,TMTC4,KANSL1L,TTC30A,LNPEP,CDC23,PRPF39,TRAM1L1,ETNK1,ZNF34,KIAA0753,FAM117A,ENTPD4,TRIM45,SMC5,KCTD1,DCAF17,VPS41,HEATR5B,E2F6,BTN2A1,VPS53,WHRN,EPC1,ZNF22,IDS,SAP30L,PABIR2,CETN2,TMEM69,SBDS,CMTR2,GORAB,TMEM128,HEATR6,HEXIM2,FBXL20,CEP44,CENPC,RBM41,HSF4,PROSER3,ARGLU1,NEPRO,LIG4,CIAO1,MAPK7,ANKRD27,IRF2,GMCL1,USP28,C10orf88,MEX3D,ANKRA2,ASB7,SGSM2,UBE2G1,C2orf49,POMT2,SMAD3,RAD51C,PLEKHA3,VMAC,NCOR1,KRI1,DCAF12,MEAF6,TMEM60,ARHGEF26,TMEM161B,PSPC1,CCDC121,KRR1,SDCCAG8,EPG5,NFXL1,WRN,HLCS,YAE1,FAM149B1,R3HDM2,PMS1,FAM160A2,ATAD2,BAZ1B,NAB2,NR2C2AP,RNFT1,APEX1,GEMIN2,JUP,VIPAS39,DDX31,HDHD5,ABI1,SPOP,WDR36,TIA1,PRUNE1,ST6GALNAC2,ZNF83,MOSMO,BAG4,PPP4R3A,TMUB2,RPS6KC1,KANSL1,INTS9,ZNF3,RNF44,FAM161B,TBC1D20,ZNF8,ZMYM3,HAUS6,TBC1D8,BMPR2,DPH1,WBP1,CDK2,SLBP,TMEM68,PELP1,VSIG10,ERCC3,TNK1,NEIL1,FAM161A,WASHC2A,ABHD10,DDX5,USP48,DTX3,GRIPAP1,RNF215,GIN1,SRGAP2,ZCCHC10,RASA3,LIPT1,ELF2,CRAMP1,LUC7L,SPOPL,TMEM65,URGCP,PNN,COA5,PDGFC,LUC7L2,BRD8,IRF2BP2,CCAR1,ERCC8,MAP2K7,CENPJ,BBS4,C14orf93,CASP8,C4orf47,COX10,XRCC1,SCD5,METTL8,THNSL1,SNX13,CBX8,PMS2,TRA2A,SH3BP5L,TMX4,ALKBH1,SMARCD3,MAPKAPK5,POLR3F,KMT2A,REV1,NEURL4,COLGALT1,BROX,NR2C1,NANP,GTF2H3,KDM1B,CRTC2,APBB3,CNTROB,STX2,RCC2,APPL1,MED24,ETV3,RUFY2,JMY,ERMAP,PARP16,TDRKH,CDYL,RBM33,RAD17,ADAL,TRIT1,NOL8,PDCL,TMEM237,COL4A5,CEBPZ,AGAP6,GGA3,WRAP73,BET1,FPGT,CEP112,DSTYK,GABPB2,DNAAF2,ZNF16,KLHL26,GEMIN8,MPHOSPH10,AP3M1,MOB1A,MAPKBP1,TRIM66,RBM39,ODF2L,C21orf91,TAF9B,GPATCH8,SAMD4B,SCFD1,PGS1,MSL2,POT1,STAG1,TMEM267,ZCCHC8,ATN1,RIBC1,COPG2,ITFG2,RFX5,TIMM21,ZNF2,KAT7,RRNAD1,IQCB1,KAT8,ZSWIM7,NSRP1,INTS3,TRIM39,PIGL,NEK3,POLE3,ZC3H7A,AASDH,RP11-523H20.5,CSAD,KIAA0895L,USP39,ARV1,NDUFAF6,ATRX,ZNF77,ABCA2,GEMIN5,FOXRED2,OSCP1,RPRD1A,GPATCH2,TRIB2,MUTYH,RBM28,ZNF74,OBSL1,DCAF8,IKZF5,TOR1AIP1,C2CD5,SPRYD7,SF3B1,CSE1L,NHLRC2,ANKIB1,CACTIN,FRA10AC1,ZBTB5,RUFY3,PRKRA,LIN37,BCLAF1,OGA,ZFP69,ZFYVE26,NUP42,ANKRD42,PAN3,MED28,LARP7,NUMBL,KMT2E,CWC22,DDX59,C2orf42,DCAF16,GOLGA1,ZC3H4,SUPT7L,MORC3,RALGDS,MED31,DLG4,EXTL2,TM2D3,ARL6,OSGEPL1,PEX1,ENAH,SEMA4F,S100PBP,RAB11FIP2,CALCOCO1,C1orf74,METTL25,SPPL3,C2orf74,MTPN,VAMP2,MTG1,SLC41A1,KAT6B,ARHGAP5,TOGARAM1,FAM217B,POGZ,FAM76B,ANAPC7,RNF216,CCDC43,IQCD,UBE2Q1,AKAP10,RBMX,TRIM23,RBM4B,DTWD1,N4BP1,YEATS2,POLR3C,TAF1C,KCTD9,NRCAM,ADNP,WDSUB1,ESYT2,MAP3K12,NCOA5,SCAI,ORC4,MBD1,IKZF4,MYO19,TEFM,ARID1B,PIP4K2B,DCAF5,NF1,SLC38A6,PRIMPOL,GID4,LRRC6,WDHD1,THAP9,TIRAP,ACTR3B,RAB22A,WDR20,EZH1,HMGB2,MRNIP,THAP6,MPV17,ELMOD3,DDX17,GGPS1,GNB5,GSTM2,C12orf66,PUS7,HAUS5,KLHL12,SENP7,RSBN1L,MTRF1,DYNC2I1,FMR1,RAD52,GALNT11,DHX33,BBS12,LIAS,DYRK1A,NINL,CTDSPL2,MARF1,GNPDA2,FBXL12,CEP290,SDR39U1,NEK1,EIF2AK1,TRPM7,MCM8,LIN52,MCUR1,IFT46,SMC6,CDAN1,TMEM150C,COIL,WSB1,GPALPP1,HAUS4,MAP4K3,FAM216A,RHEB,WDR41,PCYOX1L,PHIP,PFAS,C12orf76,WDR31,FAM228B,NCKIPSD,USP21,ALS2,ELK4,KLC1,TIGD1,CNNM3,NSD2,GPS2,TRIM52,NCBP3,DUS4L,ATL3,PPP1R21,WDR45B,CRYZL1,LMBRD1,SUPT3H,ATP6V1E2,CLASRP,ZC3HAV1L,CCDC93,DFFB,TTC13,LMBR1,DEDD,CWC25,BBS9,SNX1,STK36,TTC32,MTX3,SIPA1L3,ZMAT1,GOLGA8B,ELK1,CSGALNACT2,UTP6,HP1BP3,TMEM230,SS18,ALPK1,STRADA,TAPT1,NAF1,CBR4,ZNF18,NKRF,EIF2D,DIDO1,TEX10,GOLGA8A,APPBP2,CYP2R1,RABGAP1,PPHLN1,KCTD11,FKTN,ARNT,CNOT2,MEGF9,SETD4,STEEP1,CEP41,C1orf109,RFX1,RBM48,SLC36A4,BLMH,GOLPH3L,PSMC3IP,TSNAX,PIKFYVE,AARSD1,DUSP28,PUM2,VPS11,SEPTIN7,RBM5,RAB3GAP1,ULK2,SFMBT1,NKTR,CEP162,RBMS1,MKRN1,ACADVL,ZFP28,BCDIN3D,RAD18,ZCCHC7,TTC9C,RNF41,ZNF17,TRMT61B,TTLL3,CRBN,SDAD1,SLC30A9,POLD3,CEP170,ZNF84,CUL2,LDB1,CCP110,RXRB,PARP6,BICRAL,TUBD1,TSEN34,YAP1,ISYNA1,PDCD6,COPS8,WDR26,PACC1,NUDT17,C17orf80,ALKBH5,NEDD1,CDCA7L,PARD6G,PRPF40B,KLHL7,PCMTD1,PIAS2,CRIPT,MRPS14,KATNIP,LRP5L,ASXL1,TIPIN,TSC1,DENND4B,RPRD2,FBXO42,NAE1,TSPAN6,MAN2C1,PDCD7,USPL1,TTC33,CCDC112,MRPL38,WHAMM,NELFA,ASB8,PRPF4B,CCDC57,TET2,RABL2B,TRAPPC2,FUT11,KBTBD2,PIP5K1A,CFAP97,MORC4,IFIT5,ATF2,MRFAP1L1,TRMT10A | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGAP19,EFNA1,C14orf93,CCNT1,PRUNE,NOC3L,XPO1,MKRN2,TAF1,MECP2,WAC,POC5,PGS1,DGCR8,ZFYVE16,NTPCR,DDX6,FAN1,KCTD1,EFHC1,ULK1,FAM120C,TIFA,PARS2,SCPEP1,PNN,CDC5L,TRA2A,RAB11FIP2,DZANK1,OFD1,C11orf57,SIRT1,COX18,KIF16B,STX16,RNF219,ORC3,POLE3,KIAA0355,CASP8AP2,ANAPC10,PDIK1L,XRCC1,GTF3C2,IQCD,HAUS6,RINT1,C2orf74,DDX52,PARP2,PDCD6,EBAG9,STAT2,TIGD6,KIAA1586,PRPF40B,SETD6,UBXN7,KIFC2,CDK17,ARHGEF19,URGCP,TMEM107,LDLRAD3,NLK,ATG4C,SNAPC1,TET2,INTS3,ALKBH4,RPRD1A,ZNF44,ZNF2,OSCP1,OARD1,SLC36A4,HERC4,MED4,DCUN1D2,DDX59,DHX33,ATL2,CAMLG,RNF167,MAPK8IP3,WDR31,PTPN9,FBXO8,CCDC66,VMAC,DRG2,MZF1,VAMP2,ZSWIM1,ASH1L,EXD2,LRRC57,C2CD5,FBXO46,TIMM22,STRADA,AHI1,CEBPZOS,NEK1,KIAA1109,SPICE1,TLK2,GRIPAP1,IRX2,FBXO42,NINL,MARCH8,DEK,IFT81,PARD6G,LANCL1,RPA2,KAT6B,CDK13,SESTD1,FAM111A,RUFY2,KCTD3,MAML3,BRD3,VPS11,RBM41,GPATCH11,TRIT1,MED21,AMZ2,FAM161B,CARD8,GANC,NXT2,ERCC3,PIFO,MIS12,YTHDC2,ARGLU1,NUDT12,FOXK2,COPS3,CEP44,RASA2,DCAF8,POGLUT1,CTBS,MINK1,ITGB3BP,NSL1,SEH1L,SOCS5,GNPAT,ALKBH5,ZNF18,ARMCX1,GGA3,ATAT1,CCSAP,MEAF6,MED13L,NFRKB,KIZ,MYLIP,CBFA2T2,ATL3,BRWD1,NANP,INPP5F,REST,METTL14,DENND6A,PRKRA,EIF2D,COMMD2,ARL13B,ST6GALNAC2,HMGXB3,PITPNA,GPALPP1,CTC1,ABCB10,MPHOSPH8,METTL2A,RNF24,TTC23,KMT2E,GEMIN5,CDK2,NCK1,GALNT11,MAK16,NPEPPS,ZMIZ2,IRF2BPL,UPF3B,FOXJ1,BMI1,CHD9,WDR48,HSPA4L,SLK,PEX11A,SS18,LYSMD1,CRKL,MBLAC2,DIEXF,MLLT6,SMAD2,CPSF6,ZNF14,SLC4A1AP,NMNAT3,SPDL1,MAP6,FAM185A,MASTL,WIPF2,COA1,NAPEPLD,PSPC1,MEX3A,ADNP,FBXL20,ACVR2A,AGO4,CAMSAP2,MLF1,FAM133B,ACTR3B,GOLGA8A,ZCWPW1,PLEKHA5,ARMCX5,CLASRP,GSTA4,MON2,ZC3H11A,SDR39U1,BTAF1,METTL16,DCP1B,NOL3,E2F6,FAM122B,PFAS,CIPC,C17orf75,QTRT1,COG6,IFT74,SEPSECS,ZFP2,RAB22A,XIAP,MLLT10,PATZ1,TAF6,CRTC1,ZSWIM7,ENGASE,CUL3,PDCL,FAM127B,CSAD,WSB1,MRPL42,USP33,KLHDC9,SNX1,FBXL8,ANGEL2,HEATR5B,GSTM2,PCM1,MLLT1,VPS8,NF1,ICE2,UBA2,WDR35,THNSL1,ING5,SEMA4F,CEP120,NRCAM,UEVLD,CEPT1,TOR1AIP1,ZC3H4,ARHGAP5,KNTC1,AARSD1,PAN3,PCBD2,KRCC1,COG7,C1orf131,CABIN1,FAM160A2,ZBTB6,MDM4,RTN3,SUPT20H,TTC32,DFNB31,GTF2H3,UNG,TASP1,CCDC174,PAFAH1B1,FAM104A,ZMAT1,WDR60,RNF115,HAUS5,KANSL2,ORC4,UBAP2L,ARHGEF10,RBM43,TYW1,KAT2A,KLHL28,TAF1C,RAD52,ALPK1,SPRED1,DPYSL2,GORAB,IFT80,EID2B,NCOA6,KBTBD6,FRS2,EPC1,SLC39A10,TBP,DDX17,KANSL1L,MSL2,IFT140,IQCE,DCTN4,WDR26,C19orf44,TTC19,MOB1A,TSPAN6,CLCN3,CRAMP1,RYK,RNFT1,ZNF83,KLHL7,RABEP1,CARNMT1,PPHLN1,USP4,FBXO28,PRPF3,MAT2B,C17orf80,SUPT7L,PIK3C3,CEP89,VCPIP1,MIS18A,ASXL1,C12orf66,ZC3H6,FAM179B,SUMO2,ERMAP,INO80D,LUC7L,C2orf42,FLCN,CDYL,PCMTD1,SIN3B,ZFC3H1,RNF149,RBBP8,POLD3,SF3B1,HEATR6,SLC25A14,ZBTB4,TOPBP1,NFYB,YEATS2,ZCCHC4,TSPYL2,U2AF2,FBXO3,ZNF45,CDKN1B,DCAF5,NEK3,POGZ,ABHD18,CCDC97,GMCL1,MAVS,DHRS13,RAD17,CCDC130,BAZ1B,BCLAF1,POT1,SBDS,KDM6B,UBAP1,C21orf59,MFSD8,SPATA2,STK36,CNOT6,NR2C2AP,ELMO2,S100PBP,SPIN3,DDX31,RBMS2,SLC25A35,CPSF7,RLIM,TMEM248,RBM6,TOM1L2,FKTN,N6AMT1,ALKBH2,HECTD4,ZFP3,C20orf96,C6orf62,SLC9A6,RBM39,PDCD7,SMKR1,KRBA1,ZCCHC11,KIAA0556,CDAN1,TTC33,ABHD16A,NEK4,KIAA1143,KIAA1841,FAM76B,CC2D2A,SCAMP4,NRDE2,TRAPPC2,GABPB1,ZNHIT3,DNAAF2,FAM220A,NAE1,ZCCHC10,ERLIN2,AKAP8,LEMD3,CEP57,TMEM237,OSGEPL1,PLXNA3,CNPY4,COIL,ABHD10,FAM204A,EID2,ORC2,BET1,SLC12A6,ZNF3,SDAD1,CBFB,PPIL4,BCL2,BNIP2,UBQLN2,CMTR2,ZNF30,CFAP36,RALGDS,CDK7,TAF1B,TIA1,RBM5,CEP290,PUS7,NCBP3,HES1,MDM1,FXR2,RAB3GAP1,KPNA5,THOC2,KDSR,HHAT,MAP3K10,COQ6,MYNN,TCTN2,ANP32E,GEMIN4,CWC25,PMS2,CRYZL1,RIF1,ENOSF1,SMURF2,KRIT1,ARID2,NCOR1,KDM1B,UPRT,FRA10AC1,INSIG2,GLTSCR1L,RAB12,APPL2,C14orf79,TMCO6,CDKAL1,CSNK1E,CHSY1,MPHOSPH10,CENPJ,NDRG3,GEMIN8,NEK7,CCDC82,VAMP1,POLR2A,PTPN12,PPIL3,REV3L,PAPSS1,USP28,KIAA2026,KIAA0907,SRSF5,PPP1R26,PRR14,TRAF5,POLR3C,MAU2,SETD4,CLASP1,BBIP1,CEP162,SIKE1,SUZ12,EZH1,NUMA1,MOAP1,PROSER2,OSBPL3,R3HDM2,COQ7,FANCC,METTL8,DPH1,CDC23,CSGALNACT2,TAF5,SMIM13,HSF4,FUZ,CDK20,MTRF1,SMG7,NUPL2,ZZEF1,KRI1,TFCP2,ATAD2B,TMX3,DERL2,BRAP,RSRC2,KLHL20,NAA20,USP27X,C18orf25,TTC30B,MED28,ODF2,FOXJ2,MRFAP1L1,CIRBP,IPP,CNOT6L | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ACAA1,VPS18,COX8A,TSR3,DCXR,ASL,MVP,ACADS,SDSL,PARVB,PGAP6,NCLN,SEC13,ATP6V0D1,CERS4,LDHD,FAH | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000179859 | ENST00000324348 | exon_skip_462554 | chr6:136267028-136267175 | -15.41 | -0.1176 | BCLAF1 | ENST00000531224 | In-frame | | ENSG00000179859 | ENST00000324348 | exon_skip_326009 | chr2:64581189-64581273 | -14.01 | -0.2416 | AFTPH | ENST00000238855,ENST00000409933 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000179859 | ENST00000324348 | exon_skip_382458 | chr3:38131595-38131638 | -8.62 | -0.2463 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000179859 | ENST00000324348 | exon_skip_111863 | chr14:23565815-23565892 | -18.89 | -0.3314 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000179859 | ENST00000324348 | exon_skip_41841 | chr10:68756272-68756483 | -23.21 | -0.1228 | CCAR1 | ENST00000265872 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7913586-7913679 | 185.00 | -86.30 | 88 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7913351-7913438 | 179.00 | -85.80 | 82 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7913502-7913596 | 178.00 | -108.70 | 95 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7914592-7914685 | 175.00 | -81.51 | 87 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7913921-7914009 | 174.00 | -81.72 | 88 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7915054-7915140 | 174.00 | -70.69 | 82 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7914767-7914851 | 169.00 | -73.07 | 88 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7915743-7915821 | 164.00 | -69.32 | 79 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7913723-7913814 | 154.00 | -88.61 | 82 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7915246-7915323 | 152.00 | -76.76 | 77 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7914130-7914214 | 148.00 | -67.56 | 73 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7914311-7914389 | 146.00 | -62.41 | 78 | NA | | ENSG00000179859 | hsa-mir-22 | ENST00000324348 | chr17:7914437-7914524 | 143.00 | -68.10 | 86 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000179859 | ENSG00000046647 | GEMIN8 | ACC,CHOL,KICH,KIRC,PAAD,PCPG | CHOL | | | ENSG00000179859 | ENSG00000047578 | KATNIP | ACC,CHOL,DLBC,LGG,PCPG,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000070718 | AP3M2 | ACC,CHOL,DLBC,HNSC,KICH,KIRP,LGG,STAD,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000078246 | TULP3 | ACC,CHOL,DLBC,HNSC,KICH,KIRC,PCPG,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000082014 | SMARCD3 | ACC,CHOL,ESCA,KICH,KIRP,PAAD | CHOL | | | ENSG00000179859 | ENSG00000100228 | RAB36 | ACC,CHOL,GBM,KICH,KIRP,PAAD,PCPG,TGCT | CHOL | | | ENSG00000179859 | ENSG00000102302 | FGD1 | ACC,CHOL,DLBC,ESCA,KICH,PAAD,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000105738 | SIPA1L3 | ACC,CHOL,DLBC,HNSC,TGCT | CHOL | | | ENSG00000179859 | ENSG00000110844 | PRPF40B | ACC,CHOL,ESCA,KIRP,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000122970 | IFT81 | ACC,BRCA,CHOL,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,READ,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000128581 | IFT22 | ACC,CHOL,GBM,KICH,LAML,LGG,PAAD | CHOL | | | ENSG00000179859 | ENSG00000138834 | MAPK8IP3 | ACC,CHOL,DLBC,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000139625 | MAP3K12 | ACC,CHOL,KIRC,KIRP,PAAD,TGCT,THCA | CHOL | | | ENSG00000179859 | ENSG00000145431 | PDGFC | ACC,CHOL,PRAD,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000146083 | RNF44 | ACC,CHOL,DLBC,HNSC,THYM | CHOL | | | ENSG00000179859 | ENSG00000151881 | TMEM267 | ACC,CHOL,DLBC,GBM,KICH,KIRP,LAML,LGG,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000163013 | FBXO41 | ACC,CHOL,DLBC,LUSC,PAAD,PCPG,THCA | CHOL | | | ENSG00000179859 | ENSG00000163257 | DCAF16 | ACC,BRCA,CHOL,DLBC,HNSC,PAAD,READ,STAD,UCEC,UVM | CHOL | | | ENSG00000179859 | ENSG00000163281 | GNPDA2 | ACC,CHOL,DLBC,GBM,KICH,KIRP,LGG,PAAD,PRAD,TGCT,THYM,UCEC,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000163617 | CCDC191 | ACC,BRCA,CHOL,GBM,KICH,KIRP,LGG,PCPG,READ,TGCT,THYM,UCEC | CHOL | | | ENSG00000179859 | ENSG00000167595 | PROSER3 | ACC,CHOL,DLBC,KICH,KIRC,KIRP,LAML,TGCT | CHOL | | | ENSG00000179859 | ENSG00000169992 | NLGN2 | ACC,BLCA,BRCA,CHOL,ESCA,KICH,KIRC,KIRP,LUSC,PAAD,PCPG,TGCT,THCA,UCEC,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000170004 | CHD3 | ACC,BRCA,CHOL,DLBC,ESCA,HNSC,KICH,LUSC,OV,PAAD,PCPG,SARC,TGCT,THYM,UCEC,UCS | CHOL | | | ENSG00000179859 | ENSG00000173681 | BCLAF3 | ACC,CHOL,KIRP,LGG,PAAD,PCPG,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000174943 | KCTD13 | ACC,CHOL,DLBC,HNSC,KICH,TGCT,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000175970 | UNC119B | ACC,CHOL,DLBC,GBM,HNSC,LGG,PAAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000176994 | SMCR8 | ACC,CHOL,DLBC,PAAD,PCPG,THYM,UCS | CHOL | | | ENSG00000179859 | ENSG00000187535 | IFT140 | ACC,BRCA,CHOL,GBM,KICH,KIRP,PCPG,THYM | CHOL | | | ENSG00000179859 | ENSG00000196476 | C20orf96 | ACC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,STAD | CHOL | | | ENSG00000179859 | ENSG00000198707 | CEP290 | ACC,CHOL,DLBC,HNSC,KICH,KIRP,LGG,PAAD,PCPG,READ,TGCT,THYM,UCEC | CHOL | | | ENSG00000179859 | ENSG00000198920 | KIAA0753 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,STAD,THYM,UCEC,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000204116 | CHIC1 | ACC,CHOL,DLBC,TGCT,UCS | CHOL | | | ENSG00000179859 | ENSG00000205084 | TMEM231 | ACC,CHOL,COAD,GBM,KICH,KIRP,LGG,PAAD,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000221886 | ZBED8 | ACC,CHOL,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,OV,PAAD,TGCT,THYM,UCEC,UVM | CHOL | | | ENSG00000179859 | ENSG00000275023 | MLLT6 | ACC,CHOL,DLBC,HNSC,KIRP,TGCT,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000119640 | ACYP1 | BLCA,CESC,CHOL,HNSC,KICH,KIRC,KIRP,PAAD,UVM | CHOL | | | ENSG00000179859 | ENSG00000131470 | PSMC3IP | BLCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,OV,PAAD,UVM | CHOL | | | ENSG00000179859 | ENSG00000132680 | KHDC4 | BLCA,CHOL,DLBC,HNSC,KICH,KIRP,READ,STAD,THCA,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000134253 | TRIM45 | BLCA,CHOL,ESCA,HNSC,KICH,KIRP,LUSC,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000138002 | IFT172 | BLCA,BRCA,CHOL,DLBC,HNSC,KICH,KIRP,LGG,PCPG,TGCT | CHOL | | | ENSG00000179859 | ENSG00000139880 | CDH24 | BLCA,CHOL,ESCA,HNSC,KICH,STAD | CHOL | | | ENSG00000179859 | ENSG00000160051 | IQCC | BLCA,CHOL,GBM,HNSC,KICH,KIRC,KIRP,PAAD,STAD | CHOL | | | ENSG00000179859 | ENSG00000184445 | KNTC1 | BLCA,CESC,CHOL,DLBC,HNSC | CHOL | | | ENSG00000179859 | ENSG00000046651 | OFD1 | BRCA,CHOL,DLBC,HNSC,KIRP,MESO,PCPG,SARC,UVM | CHOL | | | ENSG00000179859 | ENSG00000112981 | NME5 | BRCA,CHOL,GBM,KICH,LGG,PAAD,UVM | CHOL | | | ENSG00000179859 | ENSG00000114670 | NEK11 | BRCA,CHOL,GBM,KICH,LGG,PAAD | CHOL | | | ENSG00000179859 | ENSG00000125434 | SLC25A35 | BRCA,CHOL,DLBC,GBM,HNSC,LUSC,OV,SARC,STAD,TGCT,UCS | CHOL | | | ENSG00000179859 | ENSG00000134504 | KCTD1 | BRCA,CHOL,ESCA,PCPG,PRAD,SKCM,THYM | CHOL | | | ENSG00000179859 | ENSG00000138036 | DYNC2LI1 | BRCA,CHOL,GBM,KICH,KIRP,LAML,LGG,READ,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000143258 | USP21 | BRCA,CHOL,DLBC,ESCA,HNSC,KICH,KIRP,PCPG,READ,STAD,TGCT,UCEC | CHOL | | | ENSG00000179859 | ENSG00000144134 | RABL2A | BRCA,CHOL,ESCA,GBM,KIRC,KIRP,LGG,LUSC,THYM | CHOL | | | ENSG00000179859 | ENSG00000163482 | STK36 | BRCA,CHOL,DLBC,HNSC,KICH,KIRP,MESO,PCPG,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000170837 | GPR27 | BRCA,CHOL,ESCA,KICH,LAML | CHOL | | | ENSG00000179859 | ENSG00000171962 | DRC3 | BRCA,CHOL,GBM,KIRP,LAML,LGG,PCPG,THYM | CHOL | | | ENSG00000179859 | ENSG00000174599 | TRAM1L1 | BRCA,CHOL,KICH,TGCT,UVM | CHOL | | | ENSG00000179859 | ENSG00000197283 | SYNGAP1 | BRCA,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,PAAD,SARC,TGCT,UVM | CHOL | | | ENSG00000179859 | ENSG00000203965 | EFCAB7 | BRCA,CHOL,ESCA,GBM,KIRP,LGG,MESO,PRAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000134762 | DSC3 | CESC,CHOL,ESCA,SKCM,THYM | CHOL | | | ENSG00000179859 | ENSG00000137804 | NUSAP1 | CESC,CHOL,DLBC,ESCA,HNSC,KICH,STAD | CHOL | | | ENSG00000179859 | ENSG00000142632 | ARHGEF19 | CESC,CHOL,ESCA,HNSC,KICH,SKCM | CHOL | | | ENSG00000179859 | ENSG00000156136 | DCK | CESC,CHOL,DLBC,GBM,HNSC,UVM | CHOL | | | ENSG00000179859 | ENSG00000164104 | HMGB2 | CESC,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,PCPG,UVM | CHOL | | | ENSG00000179859 | ENSG00000183943 | PRKX | CESC,CHOL,DLBC,ESCA,KICH,KIRP,THYM | CHOL | | | ENSG00000179859 | ENSG00000198554 | WDHD1 | CESC,CHOL,DLBC,ESCA,HNSC | CHOL | | | ENSG00000179859 | ENSG00000204130 | RUFY2 | CESC,CHOL,KICH,KIRP,TGCT,THYM,UCS | CHOL | | | ENSG00000179859 | ENSG00000205208 | C4orf46 | CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,PAAD,PCPG,PRAD,STAD,UVM | CHOL | | | ENSG00000179859 | ENSG00000213551 | DNAJC9 | CESC,CHOL,DLBC,HNSC,UVM | CHOL | | | ENSG00000179859 | ENSG00000278259 | MYO19 | CESC,CHOL,DLBC,HNSC,KIRP,PCPG,UCS | CHOL | | | ENSG00000179859 | ENSG00000006740 | ARHGAP44 | CHOL,LUAD,PAAD,PCPG,SARC,THCA,THYM,UCEC | CHOL | | | ENSG00000179859 | ENSG00000007545 | CRAMP1 | CHOL,DLBC,HNSC,KIRP,PCPG,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000009830 | POMT2 | CHOL,KIRP,PAAD,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000010626 | LRRC23 | CHOL,ESCA,GBM,KICH,PAAD | CHOL | | | ENSG00000179859 | ENSG00000011566 | MAP4K3 | CHOL,HNSC,LGG,PCPG,READ,THYM | CHOL | | | ENSG00000179859 | ENSG00000054282 | SDCCAG8 | CHOL,KICH,READ,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000070882 | OSBPL3 | CHOL,DLBC,READ,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000072832 | CRMP1 | CHOL,ESCA,KICH,KIRP,MESO,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000077514 | POLD3 | CHOL,DLBC,GBM,HNSC,KICH,LGG,OV,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000087448 | KLHL42 | CHOL,DLBC,ESCA,PCPG,READ,UVM | CHOL | | | ENSG00000179859 | ENSG00000088854 | C20orf194 | CHOL,DLBC,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000092978 | GPATCH2 | CHOL,DLBC,KICH,KIRP,LGG,READ,THYM | CHOL | | | ENSG00000179859 | ENSG00000094916 | CBX5 | CHOL,DLBC,HNSC,KICH,PAAD,PCPG | CHOL | | | ENSG00000179859 | ENSG00000095397 | WHRN | CHOL,HNSC,KICH,KIRP,PAAD,THYM | CHOL | | | ENSG00000179859 | ENSG00000101079 | NDRG3 | CHOL,DLBC,KICH,KIRP,PAAD,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000101236 | RNF24 | CHOL,ESCA,KICH,PCPG,THYM | CHOL | | | ENSG00000179859 | ENSG00000104881 | PPP1R13L | CHOL,KICH,KIRC,KIRP,SKCM,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000105186 | ANKRD27 | CHOL,DLBC,LAML,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000105245 | NUMBL | CHOL,DLBC,ESCA,KICH,KIRP,THCA,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000106012 | IQCE | CHOL,GBM,KICH,LGG,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000106144 | CASP2 | CHOL,DLBC,HNSC,KICH,KIRC,KIRP,STAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000106290 | TAF6 | CHOL,DLBC,KICH,KIRP,THYM | CHOL | | | ENSG00000179859 | ENSG00000106477 | CEP41 | CHOL,KICH,KIRP,LGG,TGCT,UVM | CHOL | | | ENSG00000179859 | ENSG00000107819 | SFXN3 | CHOL,KICH,KIRC,KIRP,THCA | CHOL | | | ENSG00000179859 | ENSG00000108468 | CBX1 | CHOL,DLBC,ESCA,HNSC,KICH,KIRP,PAAD,UVM | CHOL | | | ENSG00000179859 | ENSG00000108854 | SMURF2 | CHOL,DLBC,KICH,KIRP,PCPG,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000109685 | NSD2 | CHOL,DLBC,HNSC,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000110987 | BCL7A | CHOL,DLBC,ESCA,HNSC,LUSC,TGCT,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000111752 | PHC1 | CHOL,ESCA,KICH,KIRC,KIRP,PAAD,PCPG,UVM | CHOL | | | ENSG00000179859 | ENSG00000111785 | RIC8B | CHOL,HNSC,KICH,PAAD,PCPG,TGCT,UCEC,UVM | CHOL | | | ENSG00000179859 | ENSG00000112039 | FANCE | CHOL,ESCA,HNSC,KIRP,TGCT,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000114446 | IFT57 | CHOL,GBM,KICH,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000115271 | GCA | CHOL,DLBC,KICH,KIRP,READ,THYM | CHOL | | | ENSG00000179859 | ENSG00000115687 | PASK | CHOL,HNSC,KIRP,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000116584 | ARHGEF2 | CHOL,DLBC,KICH,KIRP,TGCT | CHOL | | | ENSG00000179859 | ENSG00000119771 | KLHL29 | CHOL,ESCA,PRAD,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000120370 | GORAB | CHOL,DLBC,ESCA,HNSC,KICH,PRAD,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000121289 | CEP89 | CHOL,ESCA,KICH,KIRC,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000122417 | ODF2L | CHOL,DLBC,KICH,KIRP,LGG,PRAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000125633 | CCDC93 | CHOL,DLBC,HNSC,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000125885 | MCM8 | CHOL,DLBC,HNSC,KICH,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000126001 | CEP250 | CHOL,DLBC,HNSC,KICH,KIRC,KIRP,PAAD,PCPG,TGCT | CHOL | | | ENSG00000179859 | ENSG00000129295 | LRRC6 | CHOL,GBM,KICH,LGG,THYM | CHOL | | | ENSG00000179859 | ENSG00000131437 | KIF3A | CHOL,DLBC,KIRP,PAAD,READ,TGCT,THYM,UCEC,UVM | CHOL | | | ENSG00000179859 | ENSG00000131788 | PIAS3 | CHOL,COAD,DLBC,ESCA,KICH,KIRC,KIRP,TGCT,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000132825 | PPP1R3D | CHOL,DLBC,PCPG,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000133059 | DSTYK | CHOL,DLBC,ESCA,KICH,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000133065 | SLC41A1 | CHOL,COAD,KICH,LGG,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000135622 | SEMA4F | CHOL,ESCA,KICH,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000135823 | STX6 | CHOL,DLBC,ESCA,STAD,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000137343 | ATAT1 | CHOL,DLBC,HNSC,KICH,KIRP,TGCT,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000137857 | DUOX1 | CHOL,LUAD,SKCM,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000138587 | MNS1 | CHOL,GBM,KICH,LGG,TGCT | CHOL | | | ENSG00000179859 | ENSG00000138801 | PAPSS1 | CHOL,DLBC,ESCA,HNSC,KICH,KIRP,READ,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000141570 | CBX8 | CHOL,KICH,LAML,PAAD,STAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000142039 | CCDC97 | CHOL,DLBC,HNSC,TGCT,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000143376 | SNX27 | CHOL,DLBC,KICH,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000143457 | GOLPH3L | CHOL,GBM,KICH,LGG,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000143569 | UBAP2L | CHOL,DLBC,ESCA,KICH,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000143643 | TTC13 | CHOL,DLBC,HNSC,KICH,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000143702 | CEP170 | CHOL,DLBC,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000143748 | NVL | CHOL,DLBC,HNSC,KICH,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000144445 | KANSL1L | CHOL,KICH,KIRP,READ,TGCT,UVM | CHOL | | | ENSG00000179859 | ENSG00000145687 | SSBP2 | CHOL,KICH,KIRC,PAAD,PRAD | CHOL | | | ENSG00000179859 | ENSG00000146858 | ZC3HAV1L | CHOL,DLBC,KICH,KIRC,KIRP | CHOL | | | ENSG00000179859 | ENSG00000147400 | CETN2 | CHOL,GBM,KICH,LGG,PAAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000149716 | LTO1 | CHOL,DLBC,ESCA,KICH,KIRP,TGCT,UVM | CHOL | | | ENSG00000179859 | ENSG00000151849 | CENPJ | CHOL,DLBC,HNSC,KIRC,KIRP,LAML,TGCT,UVM | CHOL | | | ENSG00000179859 | ENSG00000152076 | CCDC74B | CHOL,GBM,KIRP,LGG,PCPG | CHOL | | | ENSG00000179859 | ENSG00000154240 | CEP112 | CHOL,KIRC,KIRP,PAAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000154380 | ENAH | CHOL,ESCA,KICH,THYM,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000154760 | SLFN13 | CHOL,HNSC,KIRP,LAML,OV,UCS | CHOL | | | ENSG00000179859 | ENSG00000155111 | CDK19 | CHOL,HNSC,KICH,KIRC,KIRP,THCA | CHOL | | | ENSG00000179859 | ENSG00000155755 | TMEM237 | CHOL,ESCA,GBM,HNSC,KICH,LGG,PRAD,THCA,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000159239 | RP11-523H20.5 | CHOL,GBM,KICH,KIRC,KIRP,LGG,PAAD,PCPG,TGCT,THCA | CHOL | | | ENSG00000179859 | ENSG00000160188 | RSPH1 | CHOL,GBM,KIRP,LGG,TGCT | CHOL | | | ENSG00000179859 | ENSG00000160767 | FAM189B | CHOL,ESCA,KICH,KIRP,TGCT | CHOL | | | ENSG00000179859 | ENSG00000161328 | LRRC56 | CHOL,HNSC,KICH,KIRP,READ | CHOL | | | ENSG00000179859 | ENSG00000163872 | YEATS2 | CHOL,DLBC,ESCA,KICH,KIRC,UVM | CHOL | | | ENSG00000179859 | ENSG00000164221 | CCDC112 | CHOL,DLBC,KIRC,PCPG,TGCT | CHOL | | | ENSG00000179859 | ENSG00000164402 | SEPTIN8 | CHOL,DLBC,KICH,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000164649 | CDCA7L | CHOL,DLBC,HNSC,KIRC,KIRP,OV | CHOL | | | ENSG00000179859 | ENSG00000164983 | TMEM65 | CHOL,DLBC,READ,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000165138 | ANKS6 | CHOL,DLBC,KICH,KIRP,THCA | CHOL | | | ENSG00000179859 | ENSG00000166012 | TAF1D | CHOL,KIRC,KIRP,READ,STAD,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000166578 | IQCD | CHOL,GBM,KICH,LGG,PAAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000167615 | LENG8 | CHOL,DLBC,HNSC,KIRP,PCPG,SARC,TGCT,THCA | CHOL | | | ENSG00000179859 | ENSG00000167693 | NXN | CHOL,ESCA,KICH,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000167702 | KIFC2 | CHOL,DLBC,SARC,THYM,UCS | CHOL | | | ENSG00000179859 | ENSG00000167972 | ABCA3 | CHOL,COAD,LUAD,SARC,TGCT | CHOL | | | ENSG00000179859 | ENSG00000169118 | CSNK1G1 | CHOL,DLBC,TGCT,THYM,UCS | CHOL | | | ENSG00000179859 | ENSG00000173040 | EVC2 | CHOL,KICH,KIRP,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000173801 | JUP | CHOL,KIRP,SKCM,TGCT,THYM | CHOL | | | ENSG00000179859 | ENSG00000173950 | XXYLT1 | CHOL,DLBC,ESCA,HNSC,KICH | CHOL | | | ENSG00000179859 | ENSG00000176834 | VSIG10 | CHOL,HNSC,LGG,READ,THCA | CHOL | | | ENSG00000179859 | ENSG00000176903 | PNMA1 | CHOL,DLBC,KICH,TGCT,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000179051 | RCC2 | CHOL,DLBC,HNSC,KICH,KIRP,STAD,THCA | CHOL | | | ENSG00000179859 | ENSG00000182013 | PNMA8A | CHOL,ESCA,HNSC,KICH,KIRP,PAAD,TGCT | CHOL | | | ENSG00000179859 | ENSG00000184162 | NR2C2AP | CHOL,ESCA,HNSC,KICH,STAD,THCA | CHOL | | | ENSG00000179859 | ENSG00000185917 | SETD4 | CHOL,ESCA,HNSC,KIRP,PCPG,TGCT,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000186364 | NUDT17 | CHOL,DLBC,KIRP,TGCT,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000188153 | COL4A5 | CHOL,ESCA,KICH,PRAD,THYM | CHOL | | | ENSG00000179859 | ENSG00000196659 | TTC30B | CHOL,DLBC,GBM,KICH,LGG,PCPG,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000196950 | SLC39A10 | CHOL,DLBC,KICH,KIRP,UVM | CHOL | | | ENSG00000179859 | ENSG00000197119 | SLC25A29 | CHOL,HNSC,KIRP,MESO,PAAD,SARC,UVM | CHOL | | | ENSG00000179859 | ENSG00000197948 | FCHSD1 | CHOL,DLBC,KICH,KIRP,TGCT,THCA | CHOL | | | ENSG00000179859 | ENSG00000198728 | LDB1 | CHOL,DLBC,ESCA,HNSC,TGCT,THCA | CHOL | | | ENSG00000179859 | ENSG00000198863 | RUNDC1 | CHOL,DLBC,HNSC,KICH,KIRP,UCS,UVM | CHOL | | | ENSG00000179859 | ENSG00000204681 | GABBR1 | CHOL,DLBC,HNSC,KICH,KIRP,THCA,UVM | CHOL | | | ENSG00000179859 | ENSG00000206053 | JPT2 | CHOL,DLBC,KICH,KIRP,THYM | CHOL | | | ENSG00000179859 | ENSG00000213923 | CSNK1E | CHOL,DLBC,KIRP,THCA,THYM | CHOL | | | ENSG00000179859 | ENSG00000214021 | TTLL3 | CHOL,KIRC,KIRP,PCPG,TGCT,THCA | CHOL | | | ENSG00000179859 | ENSG00000240230 | COX19 | CHOL,KIRC,KIRP,THYM,UVM | CHOL | | | ENSG00000179859 | ENSG00000243364 | EFNA4 | CHOL,KIRC,KIRP,SKCM,TGCT | CHOL | | | ENSG00000179859 | ENSG00000258839 | MC1R | CHOL,KIRP,PAAD,TGCT,THYM,UVM | CHOL | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000179859 | ENST00000324348 | ACAA1 | ENSG00000060971 | ENST00000452171 | -0.1028 | 182 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ACAA1 | ENSG00000060971 | ENST00000423611 | -0.1036 | 71 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ACAA1 | ENSG00000060971 | ENST00000418880 | -0.1029 | 1250 | - | CHOL | | ENSG00000179859 | ENST00000324348 | CERS4 | ENSG00000090661 | ENST00000558331 | -0.1277 | 20 | - | CHOL | | ENSG00000179859 | ENST00000324348 | CERS4 | ENSG00000090661 | ENST00000251363 | -0.1277 | 20 | - | CHOL | | ENSG00000179859 | ENST00000324348 | CERS4 | ENSG00000090661 | ENST00000559450 | -0.1277 | 20 | - | CHOL | | ENSG00000179859 | ENST00000324348 | CERS4 | ENSG00000090661 | ENST00000559336 | -0.1277 | 20 | - | CHOL | | ENSG00000179859 | ENST00000324348 | FAH | ENSG00000103876 | ENST00000261755 | -0.1848 | 97 | - | CHOL | | ENSG00000179859 | ENST00000324348 | FAH | ENSG00000103876 | ENST00000561421 | -0.1848 | 97 | - | CHOL | | ENSG00000179859 | ENST00000324348 | FAH | ENSG00000103876 | ENST00000539156 | -0.1848 | 97 | - | CHOL | | ENSG00000179859 | ENST00000324348 | FAH | ENSG00000103876 | ENST00000561353 | -0.2148 | 1 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ACADS | ENSG00000122971 | ENST00000411593 | -0.2599 | 95 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ASL | ENSG00000126522 | ENST00000304874 | -0.1440 | 1063 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ASL | ENSG00000126522 | ENST00000380839 | -0.1706 | 9 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ASL | ENSG00000126522 | ENST00000395332 | -1.1429 | 455 | - | CHOL | | ENSG00000179859 | ENST00000324348 | ASL | ENSG00000126522 | ENST00000395331 | -0.8400 | 72 | - | CHOL | | ENSG00000179859 | ENST00000324348 | SDSL | ENSG00000139410 | ENST00000403593 | -0.1807 | 155 | - | CHOL | | ENSG00000179859 | ENST00000324348 | SDSL | ENSG00000139410 | ENST00000345635 | -0.1807 | 155 | - | CHOL | | ENSG00000179859 | ENST00000324348 | SDSL | ENSG00000139410 | ENST00000546672 | -0.1716 | 190 | - | CHOL | | ENSG00000179859 | ENST00000324348 | SDSL | ENSG00000139410 | ENST00000551760 | -0.1109 | 434 | - | CHOL | | ENSG00000179859 | ENST00000324348 | LDHD | ENSG00000166816 | ENST00000300051 | -0.1272 | 1 | - | CHOL | | ENSG00000179859 | ENST00000324348 | LDHD | ENSG00000166816 | ENST00000450168 | -0.1272 | 1 | - | CHOL | | ENSG00000179859 | ENST00000324348 | LDHD | ENSG00000166816 | ENST00000569876 | -0.1092 | 58 | - | CHOL | | ENSG00000179859 | ENST00000324348 | DCXR | ENSG00000169738 | ENST00000577532 | -0.2675 | 221 | - | CHOL | | ENSG00000179859 | ENST00000324348 | DCXR | ENSG00000169738 | ENST00000306869 | -0.2048 | 173 | - | CHOL | | ENSG00000179859 | ENST00000324348 | DCXR | ENSG00000169738 | ENST00000579004 | -0.2007 | 147 | - | CHOL | | ENSG00000179859 | ENST00000324348 | DCXR | ENSG00000169738 | ENST00000581584 | -0.2342 | 6 | - | CHOL | | ENSG00000179859 | ENST00000324348 | DCXR | ENSG00000169738 | ENST00000579821 | -0.1458 | 130 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000179859 | AC025335.1,hsa-mir-22,SNIP1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,ZHX2 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,C12orf76 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,ARF6 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,SMARCC2 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,NAB1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,TGIF1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,CBFB | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,TMPO | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,PHF10 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,XRCC1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,DPF2 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,RBMX | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,SET | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,ANKS6 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,GGA3 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,TRMT44 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,EZH1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,HEXIM1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,MAP3K1 | KICH,CHOL,THCA,DLBC,KIRP | | ENSG00000179859 | AC025335.1,hsa-mir-22,GMEB1 | KICH,CHOL,THCA,DLBC,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000179859.7 | ENST00000324348.7 | 120 | 2505 | 2867 |
|
