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lncRNA: ENSG00000179743

Summary for FLJ37453

Gene summary

Gene information	Ensembl ID	ENSG00000179743
	Gene symbol	FLJ37453
	Gene name
	HGNC
	Entrez ID	729614
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for FLJ37453

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000179743	-5.103422e-01	3.237928e-07	KICH	1.052326e-06

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lncRNA-Protein interaction for FLJ37453

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000189091	SF3B3	86.37	92.8268	Q15393	Epi	Predict
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000114982	KANSL3	78.6	91.6027	Q9P2N6	Epi	NA
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000163935	SFMBT1	43.93	90.7345	Q9UHJ3	Epi	NA
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000149554	CHEK1	37.7	90.2206	O14757	Epi	NA
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000172943	PHF8	85.22	91.4781	Q9UPP1	Epi	Predict
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000101442	ACTR5	20.01	90.2344	Q9H9F9	Epi	NA
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000171148	TADA3	4.62	90.2489	O75528	Epi	Predict

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000179743	ENST00000317122	FLJ37453	ENSG00000196378	ZNF34	23.44	93.0422	Q8IZ26	TF	Predict

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for FLJ37453

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF1,MAD2L2,TSPYL2,KRCC1,ARL16,VAMP1,HELQ,TINF2,TCEA2,ERI2,ARFIP2,TUBGCP2,PRPSAP2,MRM2,KRT10,MCRS1,IFT22,ABHD17A,BRD7,TMEM234,C12orf57,MCM7,TXNL4B,BRD1,IFT52,CIRBP,CENPX,PET100,DYNC2LI1,RNF166,MZF1,MCEE,UNK,PEBP1,DHX38,DYNC2I2,QPCTL,CFAP20,MAPK8IP3,LYSMD4,HMCES,CACFD1,SUGP2,PPP2R3B,GCHFR,TXNDC16,TRUB2,MKNK1,DMTF1,HINT2,ACD,UNKL,RPS27A,DCK,HLTF,PHF10,ING1,LMBR1L,TIMM17B,MIEF2,GPATCH11,TRAPPC12,BCCIP,CENPB,LRRC61,LRRC42,HSDL1,PIGP,ZBED4,SF3B3,WDCP,PIGW,ULK3,PIGX,BCL7A,IRAK4,GNAZ,PIK3R3,ENY2,ZFP14,STK16,CENATAC,NPEPL1,WDR5B,WDR54,SAFB2,PPP1R37,KCTD13,DTYMK,MSANTD2,TUBGCP6,TIMELESS,TRAPPC2L,CCDC14,FAM200A,OSER1,LZTFL1,E2F2,FAAP20,FAM229B,ALDH5A1,CLK4,C6orf136,SF3A3,MAEA,COMMD2,COMMD7,COA3,UBE2T,C9orf85,TERF2IP,ZBED5,EIF2B5,GNPAT,GMPR2,PMM1,INPP5B,EBNA1BP2,VRK3,PPIH,ACTR6,COA4,TTC14,IK,SIN3A,PAF1,COG4,SVBP,SUDS3,GATD1,GKAP1,SPRN,MAP2K5,TAZ,SPG7,NAA80,MACO1,GINS2,NABP2,FAM104B,DNTTIP2,C19orf44,SRSF4,UQCR11,RNF167,DAXX,SIAH1,SNUPN,EOLA2,SNX11,UBAC2,SCYL3,CYB5D2,RCCD1,GLRX5,SDF2,ZFP1,RAB4B,RFX2,COX19,POLD1,CLK2,WDR70,TARBP2,CA11,ILKAP,FIG4,MED27,MPLKIP,CNST,POLG2,CLSTN1,MST1,TUT4,RING1,RBM15,ENSA,CHKB,PSIP1,TMEM242,IFT81,CEP89,METTL17,UROD,RIC8B,KATNAL1,TMEM39B,BBIP1,PRRT2,CBY1,NPHP4,WDR83,OSGEP,USF1,CTC1,CLK1,AGBL5,NCDN,WDR5,SAMD11,GABPB1,MAD1L1,RABL2A,NASP,C3orf18,TMEM79,H3-3A,DHPS,RPAIN,NOC2L,WASHC3,OFD1,MPST,MRPS11,BABAM1,ACYP1,RBBP4,CASP9,MTFMT,ACADM,CEP19,MON1A,IFT172,MSH6,H2AC11,HELLS,CTU2,CC2D1B,RBM38,PSMA5,CDKN2AIPNL,COPS3,CFAP298,MIS12,DERL2,CBX1,MEX3B,B3GALT6,ANO8,SKP2,TTC21B,TTF1,HDAC3,RAF1,IDH2,ZWINT,C4orf46,ARID1A,C3orf62,ILF2,ZADH2,PSMD10,APBA3,PRMT9,CDC25C,C19orf54,ZFP62,GCDH,ALKBH2,CEP104,ANAPC5,BORCS6,ORMDL1,DHODH,MIIP,YTHDC1,TOPBP1,RPP38,C18orf21,C22orf39,FGFBP3,COQ6,KCTD2,C12orf73,DDX51,DDOST,DONSON,AGER,MBD4,AGO3,PIGZ,SSBP2,PRPF38A,MCM3,GPN3,TSC22D4,SRSF2,PPP6C,C1orf52,CUL9,CDK11A,SYMPK,BTF3L4,FBXW4,MLH1,TSEN54,ZNF593,IPO13,TOE1,ATG4B,CENPM,MRPL57,NXF1,MED8,UBXN2A,DCUN1D2,CDKN2C,TSSK6,EIF2B1,KIF9,PAN2,C2orf76,BMF,LRTOMT,FAM229A,YIF1B,FBXW9,SGTA,CDKN2D,MOAP1,GIGYF1,HMGN3,CCDC167,ZNF14,MBTPS1,FAM193B,BTG2,PPT2,CHEK1,CENPH,PNKP,ABCA7,TMCO6,SLC25A28,CCAR2,STK25,COG7,SEC31B,CZIB,ACOT8,METTL4,RABL6,PDRG1,KLHL17,ARHGAP33,NFYB,MBTD1,XPO6,DMAC2L,DNASE1,SPATA25,SEPSECS,BMT2,RPA3,HEXD,IFT122,SDHAF2,EEFSEC,DVL2,IDH3B,ANKRD13C,VCPKMT,HIPK1,KDM1A,ANAPC11,SCNN1D,TOR2A,ICMT,SKP1,MRPS25,BRME1,DHX16,LYSMD1,SEPHS1,AHDC1,CCDC12,KAT14,PTRHD1,FAM204A,UQCRHL,POLM,EAPP,BUD13,ALKBH3,KIF12,THOC7,OTUD5,CDK5,IGSF8,ERCC5,POC1A,ABHD8,ELAC2,IQCC,FBXO4,CASTOR3,SKA2,FAAP100,OARD1,IST1,MMAB,RAB28,PYROXD2,TRMO,TEDC2,RBBP7,ILF3,PDE9A,GLI4,CIZ1,CCDC28B,LENG8,SLC25A20,JMJD6,DCLRE1B,PHKA2,RANBP3,STK11,SNRNP25,CRIP2,PPP1R12C,C1orf159,ATP2A3,PRR3,FAM98C,NFU1,NICN1,CEP57,UBE2G2,H3-3B,IP6K2,GPC2,PPOX,ZC3H10,SWI5,CABIN1,SH3D21,WDR53,PIF1,POLR2C,ARMCX4,RSBN1,VEZF1,IFTAP,MLLT6,MORF4L1,RTL6,AHI1,ATP6V0B,INO80C,PIGH,PSMB2,NDUFAF3,MRPL20,C9orf78,FNDC10,MRPL49,TMEM18,TRIM65,COX16,GUK1,ASTE1,BIVM,CNOT6L,CNPPD1,C20orf96,PHF7,HSCB,TESK2,ADPRM,COG8,ARFGAP1,MNS1,HPF1,CAPN10,GLMN,FAM111A,ACYP2,METTL21A,BANP,APBB1,FAM136A,UNC45A,LSM3,ANKMY1,THOC1,WDR59,C8orf58,SURF1,LRRC20,MUL1,TMEM175,DNAJC8,NUMA1,FANCA,GPN2,INTS11,RPA1,ZZZ3,EZH2,HMGN2,UBR4,NDC1,TAMM41,IFT74,HDGF,MRPL24,SPACA9,PCBP2,MRM1,ATXN10,UBE2J1,SLC25A42,EEF1B2,PCID2,ZNF44,CDK20,RPA2,MAN1B1,SMPD2,TMEM116,TRIM13,MRM3,BAP1,NAA38,FAAP24,TAF8,PARS2,LTO1,KANSL2,POLR3K,PIDD1,PHC1,JTB,MRPS24,AP5Z1,PRKCQ,TBCA,SEMA4D,TCTA,TMEM251,NOXA1,CCDC106,NFYC,MTOR,CCDC137,EMD,IFT80,GGNBP2,HMGB1,RFC4,ELMO1,FBXO44,ICAM2,CDK5RAP2,OIP5,SPECC1L,RMND5B,METTL23,GLT8D1,TRMT2B,NFKBID,C17orf75,LRIG2,PARP2,CDH24,CABLES2,SBK1,LCMT2,ABTB1,PRRT3,PCED1A,STX8,NHP2,TUSC2,C11orf98,NT5DC2,PHF13,ELP5,TBCB,SV2A,SRSF9,CHRNB1,IKBKB,SYCE1L,MRPS15,DYNLT2,BRF1,CEP70,ZC3H8,PPP1R3F,GRIPAP1,RAB17,THOC6,UBOX5,ST3GAL3,PAXBP1,DNAJC19,LEMD2,LENG1,TMEM186,H2BC21,COA1,ZNF48,MOGS,GALT,KCTD18,TADA2A,CEP85,PEX11G,PRMT7,CCHCR1,ZFYVE19,INPP5E,SCAP,TRADD,RER1,PHF11,KATNB1,SLC35C2,PPM1K,IL11RA,TLE2,EYA3,NKAP,CETN3,TBCD,NAP1L1,NXT1,TPGS2,UNC50,QARS1,ZSWIM1,BCL7B,TRPT1,MYNN,SUMO2,PSPN,VPS4A,NIT1,HDAC1,RNF220,MRPS9,SERP2,MED19,HEMK1,CDCA8,HDAC2,UPF3B,ROGDI,POMGNT2,CD2BP2,SMIM12,TMEM218,IFT20,TMEM199,PLEKHM2,ALKBH4,PCSK4,DMAC1,PYURF,RAB11FIP3,HAUS1,CCDC127,PUSL1,C18orf32,FRS3,SZRD1,NDUFAF5,GPBP1,C2orf68,FBXL8,AP4M1,NDUFAF7,SLC41A3,RBM6,DRAM2,FRG1,TRMT13,ZNF862,KHDC1,LRWD1,AK2,IDUA,PIGK,MCCC1,POP5,RIBC2,CDIPT,FXR2,SYF2,ORAI3,SMAD4,TMEM91,ACP1,PAXIP1,MYL5,UBXN6,TXNRD3,GDI1,CNPY4,MKKS,WASF2,GGT7,EPM2AIP1,UCKL1,FKBP3,SCAND1,COX14,PSME3IP1,NAP1L4,TCF25,SRR,FANCC,WDR27,RBM8A,CAPZB,DHRS1,UBXN11,HAGH,PTCD1,CCDC71,MTA1,NHLRC4,NAIF1,DTNBP1,PPCDC,SSBP3,KHDC4,DCAF15,CROCC,CERS5,TFDP2,RSAD1,USF2,ATPAF2,NBPF1,AKR7A2,PNISR,HARBI1,RP9,SFPQ,SCAMP5,AMT,ACAP3,TMEM59,TRIOBP,DDX23,SNRNP40,CCDC51,GLOD4,UNC119B,PANK4,AMZ2,SPAG7,TMEM187,MVD,ENKD1,ATP5IF1,SRSF7,LRRC14,NISCH,DET1,FBXO9,ATAT1,LRIF1,TAF11,DUT,MORN2,STMN1,PRKCZ,PYM1,EXO5,PEF1,PLCG1,PSRC1,ZBTB8OS,CEP63,NUDC,RASSF1,PBX2,TRMU,MYPOP,CTBP1,MRPL34,BICRA,OSBPL9,POMT1,WDR25,PSMA2,STARD3,DALRD3,STMP1,POC5,ARF5,CHTF18,RAB4A,RBM23,AKAP8,VPS51,FANCG,CDPF1,CEP250,NUP214,UBTF,UIMC1,UBE2J2,TJAP1,SMARCE1,MKS1,MYL12B,C1orf35,CCDC174,HES6,WDTC1,LSM10,MTIF3,MCM2,CDK5RAP1,PIP4P1,C7orf26,DHFR,FOXRED1,MARCHF9,IFT88,PIGC,COX11,TBP,ZCWPW1,NPRL2,IRF2BPL,COQ3,EML3,SUV39H2,KLHDC4,MIS18A,TAF12,EIPR1,CCNL2,ZC4H2,DHFR2,TTC30B,TTC19,FBXO46,MYCBP,CCDC115,EXOC3,CLK3,TTLL5,TENT4A,TMSB15A,OBI1,DPH2,ZER1,NUSAP1,GABBR1,CCDC77,CHTOP,MIEN1,KANSL3,GINS3,LSM5,RFNG,TCEAL1,BCAT2,ALG5,SGSM3,PHF8,TYK2,WDR45,VILL,C1orf174,COQ4,TDP1,COPS9,CNRIP1,OSBPL7,DHRS12,ORC3,PI4KB,PBXIP1,CENPQ,PHLDB3,NREP,TXNDC12,ARMC5,NFRKB,FTSJ3,RAD1,ACBD4,PMF1-BGLAP,LRRC23,U2AF2,CSTF3,RBM26,SNRPD3,DFFA,PLA2G6,TCFL5,RNPS1,ZBTB3,PDCD2,TERF2,ENTR1,CYBC1,DCP1B,MLLT11,CEBPZOS,ENDOV,DPY30,POLR3H,SP4,PPIE,CLDN15,MRPL11,FAM50A,SF3B6,RAMP2,POLI,CHMP1A,PRIM1,SEMA6C,PRPF39,TRAM1L1,ZNF34,ERMARD,HDHD2,KIAA0753,FAM117A,NDOR1,SMC5,GEMIN6,WHRN,EPC1,PSKH1,ZNF22,MZT2B,PHF1,MTHFR,HIRA,TMEM69,ASF1B,HDAC10,HEXIM2,CEP44,KLC4,CENPC,SCRN2,HSF4,NOL9,ATRAID,ANKS3,ARGLU1,NDUFA10,GON7,UCK1,TTI2,POLR2D,SMDT1,GMCL1,PSPH,ANKRD54,C10orf88,MARCKSL1,USP19,ANKRA2,SGSM2,SUMO1,RASSF7,RAD51C,LAMTOR1,VMAC,SMARCD2,KRI1,RNF25,BCL2L12,MEAF6,SCMH1,NUP88,PPP4R1,TMEM60,PSPC1,ASRGL1,RBM45,YAE1,ACTR1B,CENPS,OGG1,QRICH1,PMS1,MFNG,B3GALT4,NR2C2AP,GEMIN2,VIPAS39,ZGPAT,METTL6,HDHD5,SPOP,CNIH2,CCDC28A,TIA1,EIF2B3,PEX14,ZNF83,RETREG3,ARFRP1,NSUN6,ZNF3,CIAO2B,KIAA2013,IFI27L1,DNMT3A,RRAGC,SDF4,ABCD4,BRAT1,CDK2,TRAPPC3,PSMG3,ERCC3,MYL6B,SAYSD1,C19orf25,SZT2,RPH3AL,VPS33B,USP48,KPTN,CSKMT,DTX3,MTG2,E2F1,THOP1,CKS1B,NAT9,ELF2,NDUFA5,CRAMP1,NUDCD2,LUC7L,PCNA,KLHL22,NKIRAS2,ARL6IP6,EEF1A1,WDR6,CWF19L1,COA5,DSN1,BRD8,MICOS10,RALY,SUCLG1,MAP2K7,CENPJ,BBS4,C14orf93,TWF2,DPH7,EIF1B,TRA2A,NSMCE4A,ALKBH1,SMARCD3,DPH5,ATP5PF,MAPKAPK5,RPS13,FUNDC2,MRPL43,POLR3F,CEP131,DUS1L,NEURL4,DHRS4,PNPLA7,HINFP,NR2C1,IP6K1,BRD9,CRTC2,NRIP2,CNTROB,STX2,CYTH2,THTPA,BDH2,RCC2,B9D2,EIF3I,NOP53,MED24,SMIM19,WBP1,PARP16,RWDD2A,RBM33,TRIT1,ADAL,IMMP1L,LRCH4,TIMM21,SRRT,SSR2,CTNNBIP1,WRAP73,TPRA1,ZXDC,ATP5PB,NELFB,GEMIN8,NUDT16L1,CFDP1,RBM39,C15orf61,RPS29,TAF9B,SLC26A6,PDHB,MRPS26,PGS1,MSL2,ARMCX6,UBE2I,IRF3,MDC1,NRF1,C1orf122,DCTN3,C16orf86,ZNF2,ADGRL1,IQCB1,SNRPD2,COQ5,KAT8,ZSWIM7,SNF8,TRIM39,SDHB,SLC25A11,HRAS,PIGL,HSBP1,PPP5C,POLE3,BIN3,RP11-523H20.5,CSAD,KIAA0895L,PAAF1,MIF4GD,HSD17B8,NDUFAF6,ZNF77,ATAD3B,MUTYH,ZNF74,DCAF8,PHYKPL,REXO4,CACTIN,FRA10AC1,ASMTL,EME1,ZBTB5,RUFY3,PRKRA,PYCR2,NUP42,IFT27,ZNHIT1,CBFA2T3,PHKG2,MED28,NARF,PMF1,HACL1,SARS2,LARP7,ZC3HC1,ARHGAP4,ASB6,DDX59,SS18L2,SWSAP1,C2orf42,TBC1D17,SENP3,DCAF16,ISCA1,GOLGA1,PTPMT1,ZC3H4,SUPT7L,ARL3,QSOX2,MED31,EXTL2,CENPT,KEAP1,CUL7,PACS2,S100PBP,RBM4,SHC2,CALCOCO1,CFAP410,VAMP2,MTG1,MRTO4,DTNB,IMMP2L,FAM76B,POGZ,GTPBP3,ANAPC7,PANK2,SIRT2,NUDT2,DBP,IQCD,LSM4,SLC35E2B,C1orf50,PSMD3,RBMX,RBM4B,TSC2,SNRPB,DNAJB2,EXOG,APOM,MRPS31,CCDC102A,ANAPC2,BEND5,C21orf58,TAF1C,UFD1,RBM14,H2AZ2,NCOA5,TMEM143,ORC4,MBD1,LCAT,DCTN2,TEFM,TCEANC2,PAFAH2,BIN1,RABAC1,GET3,RNASEH2B,PRIMPOL,BAIAP3,RPS8,RPS11,SMPD4,MAL,ACTR3B,CXXC1,SPHK2,HMGB2,EZH1,SKAP1,ZNF71,LIPT2,PSMA4,TTLL1,STX5,OCIAD2,SLC44A2,PARD6A,CSTF1,TRIM62,GPATCH3,ING4,NECAP2,HAUS5,SENP7,MTRF1,RAD52,REC8,TBC1D7,DNAJC7,THYN1,EPB41,DYRK1A,NINL,CTDSPL2,FBXL12,SDR39U1,PRAF2,SLC25A17,MCM8,TELO2,LIN52,IFT46,CDAN1,EID1,GPALPP1,HAUS4,GTF2A2,TEDC1,FAM216A,TRAIP,FAF1,STK19,LRRC29,C12orf76,WDR31,FAM228B,MED22,WASHC1,PDAP1,USP21,TIGD1,KLC1,PTMS,CDC26,CNNM3,RBM10,ADGRB2,GPS2,TRIM52,E2F4,NCBP3,PPP1R21,THAP3,NOL12,MTFR1L,SPIN2B,CRYZL1,ARMC7,MOSPD3,PCP2,CLASRP,ATP6V1E2,LYRM1,OAZ1,CWC25,HMGN1,ANKRD16,TTC32,MOB2,BAHCC1,TM2D1,ZMAT1,GOLGA8B,GRB2,COMMD6,COASY,STMN3,UTP6,HP1BP3,SPATA33,EEF1D,DNM1,NDUFB6,STRADA,TAPT1,SMG9,ZNF18,CBWD2,TIMM29,TMA7,DIDO1,ITGAE,EMC9,CYP2R1,PAM16,MACROD1,YBEY,SETD4,CEP41,CERK,TPRKB,SPATA24,TPRG1L,RBM48,KLHDC3,BLMH,PSMC5,PSMC3IP,TYSND1,AARSD1,SPAG16,DUSP28,HMGN5,RBM5,BOLA1,PXMP2,DNAJC11,ANP32A,SFMBT1,SMIM4,NKTR,YPEL3,SAP30BP,THAP8,RNASEH2C,VPS16,BCDIN3D,TOMM5,ZNF17,ADPRS,TTLL3,SF3B2,SLC25A45,ZNF84,PRPSAP1,PIN1,RXRB,CCP110,PARP6,RHBDD3,TUBD1,CACNB3,TUBA1A,TMEM238,WDR33,TBC1D10A,NDUFV3,NMRK1,ALKBH5,C17orf80,TRA2B,MDP1,PMPCA,REX1BD,MRPS14,CRIPT,TIPIN,SH3GLB2,TMEM35B,MAP4K2,DENND4B,NGLY1,FASTK,CYHR1,SIRT6,FBXO42,NAE1,DCAF11,MAN2C1,DXO,HSPB11,USPL1,USP20,LZTR1,MRPL38,LIG1,ASB8,EMC8,CCDC57,RABL2B,TRAPPC2,SIRT7,HINT1,MRFAP1L1,STK38

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DPH7,C14orf93,DTNBP1,CENPB,NUDC,POC5,PGS1,PEX11G,OIP5,COX16,DGCR8,PAAF1,LIPT2,CCDC167,PITHD1,MAP2K5,FAM110A,PDDC1,IDH2,VRK3,ELF2,RNF219,HEMK1,GPATCH3,SH3GLB2,IST1,TBCC,BRD7,PARP2,CENPM,LDOC1L,ANKRD13C,MZT2B,ATG4C,ALKBH4,EPB41,TUSC2,COA4,WDR31,MAPK8IP3,MIIP,KAT5,VMAC,MZF1,HINT2,ERI3,C3orf62,E2F2,ZSWIM1,TWF2,MYL5,FBXO46,TIMM22,STRADA,EZH2,ANAPC4,LRRC42,MARCH9,SS18L1,PCP2,PPCDC,NT5M,ATPAF2,GRIPAP1,FBXO42,LEMD2,NABP2,PRMT9,MACROD1,SYMPK,RPA2,EXO5,FAM111A,PKIG,PTCD1,TRIT1,GCDH,PIGV,TINF2,UQCRH,AMZ2,NIT2,ERCC3,MIS12,UBIAD1,C16orf91,SEMA4D,ERI2,ARGLU1,AP4B1,TAZ,DCAF8,C22orf39,YDJC,YTHDC1,ITGB3BP,DCLRE1B,SF3B3,OTUD5,ALKBH5,ZNF18,KIZ,UBE2J2,DHPS,KHDC1,WRNIP1,FANCA,PRKRA,METTL6,FOXO6,DHX30,TSC22D4,GCHFR,RAD54L,SMPD4,C3orf18,CTC1,MSL1,PRKCQ,UNC45A,VARS2,IRF2BPL,REC8,E4F1,KLHDC4,PSMB6,UBXN6,ZNF14,COA1,RBM10,ACTR3B,C8orf58,SRP14,PBXIP1,AGO1,SDR39U1,ELMO1,ACAP3,DCP1B,RAD9A,SDHB,TMEM88,QTRT1,C17orf75,IQCB1,IFT74,SEPSECS,HMGB2,PSMA5,NENF,UBE2J1,ACCS,INO80C,C2orf68,GPN2,B3GALT4,SAT2,TXNDC12,CSAD,PDE9A,C19orf25,FBXL8,HIST3H2A,IFI27L1,SCNM1,RBM38,ATPIF1,CYTH2,HDAC1,COMMD3,SBK1,VPS25,ING5,RCAN3,BABAM1,AARSD1,KRCC1,COG7,PRIM1,NEURL4,MDM4,KCTD2,KIF22,GMEB1,SIRT4,TMEM251,CCDC174,THOP1,COG4,C20orf196,ZMAT1,CA11,LYSMD4,NUSAP1,WDR60,HAUS5,SNUPN,GPS2,RAD52,EID2B,KEAP1,TJAP1,TOMM5,IMMP1L,EPC1,PARK7,TBP,MRPS31,GMPR2,MSL2,MAZ,C19orf44,KTI12,ZNF83,GINS3,GLTSCR2,EVL,TLE2,ATRAID,PRPF3,HDGF,CEP89,ZC3H6,TIMM17B,THAP3,FBXW9,VPS33B,C2orf42,LAMTOR4,PHACTR4,PSMA7,NSUN4,COQ3,TXNL4B,ICAM2,C6orf203,MCM7,METTL21A,TOPBP1,SAYSD1,TMSB15A,U2AF2,NUDT7,TSEN54,HSCB,EYA3,EAPP,ELAC1,UBE2T,GGA1,CCDC130,TIMELESS,MAGEF1,PHF13,NELFCD,FANCG,NMNAT1,ABCD4,TSSC1,NRF1,MRPS14,FTSJ3,TRIOBP,NR2C2AP,ACTR1B,SUMO1,PRRT3,S100PBP,NKAP,C19orf54,APOM,SLC25A35,POMT1,ARIH2OS,PPP1R12C,PRMT6,UFSP1,RBP7,RPS27,CDAN1,FAM76B,SGSM3,CNPY3,GTF2H4,NAE1,CEP57,METTL12,HAUS1,CNPY4,FAM204A,ZNF3,C11orf98,LRRC41,COQ10A,PBX2,GTF2A2,OXLD1,CFAP36,METTL17,CABLES1,TIA1,ATP6V1E2,CCDC53,H6PD,NCBP3,NICN1,BCAT2,FXR2,ZER1,TMEM116,KPNA5,C9orf114,ING4,C2orf81,COQ6,MYNN,ARID1A,PSMC5,CWC25,CRYZL1,MPLKIP,LRWD1,NFU1,UNC119B,POLR2D,PANK2,MRPL24,TMCO6,ARHGAP4,GPN3,CENPJ,AURKAIP1,TRMO,RNASEH2B,KIAA0907,SRSF5,PRR14,PSMA2,SETD4,YIF1B,CCDC137,ARFRP1,FAIM,CCDC106,SZRD1,NUMA1,MOAP1,KPTN,LZIC,ANAPC15,ZGPAT,ABCF1,ARIH2,ZNF48,HSF4,MED30,NUPL2,RGS12,HIRA,HSPB11,DERL2,CMPK1,NUP85,NAA38,MED28,ODF2,CIRBP,UBTF,KIAA2013

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for FLJ37453

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NOCT,ABL2,FNDC3B,NPC1,APLP2,PLAUR,MVP,CTSA,TPP1,TMBIM1,SLC39A14,PLBD2,ANXA2,CCPG1,PML,RAB31,MYOF

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000179743	ENST00000317122	exon_skip_6419	chr1:51756319-51756358	-13.11	-1.0925	OSBPL9	ENST00000428468	In-frame
ENSG00000179743	ENST00000317122	exon_skip_52701	chr10:97468965-97469104	-23.74	-0.1840	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_53559	chr10:101793912-101793998	-19.51	-0.4759	OGA	ENST00000361464	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_111863	chr14:23565815-23565892	-17.98	-0.2532	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_370518	chr22:50247691-50247776	-18.56	-0.2475	HDAC10	ENST00000216271	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_374375	chr3:49675182-49675309	-22.65	-0.2097	APEH	ENST00000296456	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_481821	chr8:22067084-22067159	-19.75	-0.2992	DMTN	ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266	In-frame
ENSG00000179743	ENST00000317122	exon_skip_494079	chr8:144099080-144099205	-23.94	-0.2302	SHARPIN	ENST00000398712	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_511212	chrX:71555189-71555385	-23.27	-0.1212	OGT	ENST00000373719	Frame-shift
ENSG00000179743	ENST00000317122	exon_skip_436498	chr5:96729152-96729209	-8.76	-1.0950	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000179743	ENST00000317122	exon_skip_291984	chr17:59119318-59119495	-18.03	-0.1243	SKA2	ENST00000330137	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for FLJ37453

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000100802	C14orf93	9	BLCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000187650	VMAC	5	CHOL,HNSC,KICH,KIRC,KIRP
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000099326	MZF1	6	CHOL,DLBC,HNSC,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000134884	ARGLU1	5	CHOL,DLBC,KICH,KIRC,KIRP
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000095059	DHPS	5	CHOL,GBM,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000167967	E4F1	5	CHOL,GBM,HNSC,KIRC,KIRP
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000100445	SDR39U1	7	BLCA,CHOL,GBM,HNSC,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000168395	ING5	6	CHOL,HNSC,KICH,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000215041	NEURL4	5	CHOL,KICH,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000105072	C19orf44	5	HNSC,KICH,KIRC,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000106459	NRF1	7	CHOL,HNSC,KICH,KIRC,KIRP,MESO,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000125503	PPP1R12C	5	CHOL,HNSC,KICH,KIRC,KIRP
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000116001	TIA1	5	BLCA,CHOL,HNSC,KICH,KIRP
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000145029	NICN1	6	CHOL,DLBC,HNSC,KICH,KIRP,PAAD
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000156858	PRR14	6	CHOL,GBM,HNSC,KICH,KIRC,KIRP
ENSG00000179743	ENSG00000196378	ZNF34	ENSG00000108312	UBTF	7	BLCA,CHOL,DLBC,KICH,KIRC,KIRP,PAAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000179743.3	ENST00000317122.1	103	596	285

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential