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lncRNA: ENSG00000177337

Summary for DLGAP1-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000177337
	Gene symbol	DLGAP1-AS1
	Gene name	DLGAP1 antisense RNA 1
	HGNC	31676
	Entrez ID
	Gene type	antisense
	Synonyms	DLGAP1-AS1\|18p11.31
	UniProtAcc

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Structure and expression level for DLGAP1-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000177337	2.813795e+02	1.643455e+00	3.580039e-01	4.590607e+00	4.420000e-06	3.090000e-05	UP	GBM
ENSG00000177337	1.794650e+02	-2.703741e+00	6.538643e-01	-4.135019e+00	3.550000e-05	7.618690e-04	DOWN	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000177337	5.129086e-01	3.150504e-04	CHOL	6.972562e-04
ENSG00000177337	-5.487833e-01	2.577506e-08	KICH	1.229272e-07

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lncRNA-Protein interaction for DLGAP1-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000177337	ENST00000317114	DLGAP1-AS1	ENSG00000004534	RBM6	63.04	90.2631	P78332	RBP	NA

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lncRNA-DNA interaction for DLGAP1-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARL16,UXT,TCEA2,CTF1,PRPSAP2,RAB20,TMEM234,C12orf57,ETV4,CMC2,C1orf56,RGS10,PLP2,TMUB1,RPS27A,PIR,DPP7,TMEM179B,MRPL46,LMBR1L,PNKD,EPCAM,IRAK4,METTL5,VMP1,CENATAC,WDR5B,MSANTD2,TRAPPC2L,CCDC14,OSER1,FAAP20,COMMD7,COA3,LAMTOR2,GLRX2,DOK1,PPIH,INPP5K,COA4,TRIP10,CDK2AP2,SVBP,SUGP1,TAZ,NAA80,SIGIRR,PSMD13,GTF2H5,SNX11,ECHDC2,CYB5D2,RCCD1,SDF2,CYSTM1,CLK2,ILKAP,CISD3,POLG2,DHX34,PSENEN,SSU72,CHKB,CEP89,UROD,BBIP1,WDR83,USF1,CTC1,CLK1,ITGB3BP,GABPB1,RABL2A,ANKRD39,DHPS,RPAIN,OFD1,HSPE1,SMS,CARS2,ACYP1,CASP9,NQO1,FCHSD1,PSMA5,CFAP298,GAR1,DERL2,PFDN6,TOR3A,CCDC28A,NDUFA2,ORMDL1,HLA-DMA,MIIP,LPAR2,RPP38,C18orf21,HDHD3,MCAT,CYBA,C12orf73,PSMB3,MTLN,TSEN54,RNPEP,ATG4B,MRPL57,NXF1,MED8,C2orf76,PFDN5,LRTOMT,CCS,UNC13D,FAM193B,PNKP,TMCO6,SLC25A28,CZIB,TMEM126B,KLHL17,RPA3,HEXD,COA6,SDHAF2,TESC,RPL23A,ANAPC11,CCDC24,CCDC12,PTRHD1,KRTCAP3,IGSF8,HSD17B7,TRIR,HCST,GPX2,JMJD4,SCNM1,THADA,MRPL55,EMG1,MED7,TLNRD1,JMJD6,ATP2A3,PRR3,PPOX,SWI5,WDR53,MLLT6,IFTAP,UCP2,C19orf53,INO80C,TAX1BP3,NDUFAF3,MRPL20,TRIM65,GUK1,EIF2B4,C20orf96,SP5,HSCB,ADPRM,MIX23,CAPN10,PFDN2,FAM111A,ACYP2,METTL21A,MICA,FAM136A,THOC1,SURF1,GNPTG,AGA,ACBD6,SEPTIN4,TAMM41,MRPL24,SPACA9,SMPD2,VAPA,POLD4,JTB,TBCA,TPT1,SHISA4,EMD,IFT80,NELFE,MYL12A,METTL23,NFKBID,GSDMD,P4HTM,PCED1A,ABTB1,MAF1,STX8,TUSC2,EVA1B,C11orf98,ELP5,TBCB,CHRNB1,MRPS15,PFN1,NDC80,ENOSF1,DNAJC19,TM4SF1,UNC93B1,CASP4,TADA2A,DENND6B,PEX11G,CCHCR1,ZFYVE19,TRADD,ARHGDIB,PHF11,PTRH2,CLIC1,NEK8,NXT1,ST3GAL5,SERF2,SYNGR2,PSME1,PSMB10,NIT1,ODF3B,HEMK1,SYTL3,TMEM218,IFT20,TMEM199,RASSF3,GSAP,PYURF,C2orf68,FBXL8,PSMG2,NDUFAF7,SLC10A3,RBM6,DRAM2,KRTCAP2,S100A4,ADPRH,POP5,SYF2,ORAI3,TMEM91,GNG5,TNFRSF14,ABCB6,SCAND1,COX14,PSME3IP1,CASP1,UBXN11,B9D1,PPCDC,S100A13,KHDC4,RSAD1,TRIOBP,CARD8,ENKD1,DUSP18,VPS72,BLOC1S1,ATAT1,MORN2,DUT,PEF1,ZBTB8OS,NUDC,RASSF1,NAGK,CCDC107,NFKBIB,SEM1,DALRD3,IL4R,RIT1,JPT1,CDPF1,MYL12B,C1orf35,LSM10,BUD23,PIGC,C14orf119,ZCWPW1,NPRL2,KLHDC4,TAF12,TMEM53,VAMP8,AFMID,ANKRD10,TOB1,CHTOP,HHLA3,MIEN1,C17orf58,H2AJ,SGSM3,TP53I13,WDR45,COPS9,ZMAT5,PBXIP1,KAT2A,TACSTD2,TXNDC12,TMCO4,SNU13,LRRC23,SIPA1,TMEM223,PLA2G6,CYBC1,VAMP5,RHPN1,COL9A2,DPY30,MRPL11,ITPA,TMEM258,ERMARD,MYL6,ZC3H12A,CTSH,GEMIN6,PHF1,CETN2,TMEM69,ABHD11,HDAC10,HEXIM2,SCRN2,GMFG,HSF4,ATRAID,NOXA1,C1RL,ANKRD54,PNRC1,SUMO1,RASSF7,BMP4,TAF10,RNF25,BCL2L12,TMEM60,HSPBAP1,KRT18,YAE1,DYRK4,B3GALT4,SLC8B1,PSMG4,PBX4,EIF2B3,TIA1,ZNF83,RETREG3,TMUB2,PREB,TXNDC11,ANXA2,IFI27L1,PTPN2,VSIG10,PSMG3,TRAPPC3,MRPL27,VOPP1,ARPC4,MYG1,CD58,NAT9,UBA7,LUC7L,LSM2,COA5,C1orf54,C14orf93,TWF2,LRSAM1,DPH7,CKLF,RPS13,APBB3,BDH2,B9D2,HEBP2,TLCD1,TEPSIN,FKBP2,AGAP6,GEMIN8,DNAJC30,ACOT13,IRF3,COPS7A,IMP3,PYGO2,CHCHD5,TMEM44,RRNAD1,ZSWIM7,TRIM39,SNF8,CSAD,RINL,MIF4GD,ARV1,ATAD3B,SAMD10,MUTYH,BANF1,DCAF8,BCL7C,FRA10AC1,RPL27,HAX1,PYCR2,IFT27,RECQL5,PHKG2,NARF,PMF1,POLR2J,C2orf42,PRDX1,RAB13,NT5C3B,MED31,CENPT,IAH1,HEXA,MRTO4,ANAPC7,CXCR4,NUDT2,IQCD,C1orf50,PPCS,SERPINB6,TEFM,COX17,SAMD1,SLC38A6,RPS8,MAL,EZH1,SKAP1,MRNIP,MPV17,ELMOD3,PSMA4,PARD6A,GGPS1,CSTF1,NECAP2,ING4,NSUN5,REC8,HDAC7,TBC1D7,THYN1,RRAS,PRAF2,PGGHG,TMEM107,CNBP,AUP1,C12orf76,FAM228B,WASHC1,USP21,ZDHHC16,TIGD1,NMI,GPS2,NDUFC1,THAP3,ARMC7,DEDD,CST3,TTC32,ZMAT1,SPATA2L,GOLGA8B,COMMD6,SPATA33,ACP6,EIF2D,CREM,PAM16,FLOT1,TCIRG1,TGIF1,TPRKB,SPATA24,CARD19,RNPEPL1,EDEM2,RPS27L,DUSP28,RBM5,BOLA1,S100A11,SMIM4,YPEL3,RBMS1,SAP30BP,PLEKHO1,ADPRS,TTLL3,NSMCE1,ATP5MC2,RHBDD3,ISYNA1,PDCD6,IFI35,SPSB2,REX1BD,CHMP4B,CRIPT,FBRS,SH3GLB2,TMEM54,DXO,TPM2,TMC6,ANKRD13D,CCDC57,RABL2B,SIRT7

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for DLGAP1-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TBC1D14,CPEB3,FAM168B,L2HGDH,GSK3B,MYCBP2,GTF2I,SCAPER,UBR3,TRUB1,SOS2,PDPK1,RAPGEF2,AP3D1,FBXW8,CS,GBF1,ZFYVE1,NDST1,MARK4,ACO2,TTC3,MIEF1,LARP1,SLC30A9,POFUT1,ACVR1B,GPHN,CLASP2,HECTD1,EVI5L,FASN,NAA30,COG6,SLC39A9,ARHGEF9,TRAK1,RCOR1,ZHX1,ATRN,EEF2,HCFC2,LMTK2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000177337	ENST00000573355	exon_skip_64939	chr11:112230207-112230230	-5.55	-0.2921	PTS	ENST00000280362	Frame-shift
ENSG00000177337	ENST00000573355	exon_skip_84898	chr12:62566013-62566031	-6.03	-3.0150	MON2	ENST00000393630	In-frame
ENSG00000177337	ENST00000573355	exon_skip_111863	chr14:23565815-23565892	-10.29	-0.1633	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000177337	ENST00000573355	exon_skip_363747	chr22:23877720-23877869	-13.13	-0.1132	SLC2A11	ENST00000345044	Frame-shift
ENSG00000177337	ENST00000573355	exon_skip_150854	chr17:32366664-32366757	-9.18	-0.1732	ZNF207	ENST00000321233	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for DLGAP1-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000177337	ENSG00000100319	ZMAT5	ACC,LIHC,MESO,PCPG,THCA		PCPG
ENSG00000177337	ENSG00000101558	VAPA	ACC,DLBC,HNSC,KIRP,LIHC,LUAD,MESO,OV,PCPG		PCPG
ENSG00000177337	ENSG00000108387	SEPTIN4	ACC,LIHC,PCPG,TGCT,UCS		PCPG
ENSG00000177337	ENSG00000115525	ST3GAL5	ACC,PCPG,TGCT,THYM,UCS		PCPG
ENSG00000177337	ENSG00000118292	C1orf54	ACC,GBM,LGG,SARC,TGCT	GBM
ENSG00000177337	ENSG00000118680	MYL12B	ACC,BLCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,OV,PAAD,PCPG,READ,THCA		PCPG
ENSG00000177337	ENSG00000125611	CHCHD5	ACC,BLCA,GBM,KICH,LIHC,THYM	GBM
ENSG00000177337	ENSG00000126264	HCST	ACC,GBM,LGG,MESO,TGCT,THYM	GBM
ENSG00000177337	ENSG00000136147	PHF11	ACC,CHOL,GBM,KICH,KIRP,LGG,PCPG,TGCT,THYM		PCPG
ENSG00000177337	ENSG00000141232	TOB1	ACC,GBM,KICH,LGG,PCPG		PCPG
ENSG00000177337	ENSG00000157873	TNFRSF14	ACC,GBM,LGG,SARC,TGCT,THYM	GBM
ENSG00000177337	ENSG00000167272	POP5	ACC,CHOL,GBM,KICH,LGG,LIHC,LUAD,READ,THYM	GBM
ENSG00000177337	ENSG00000181019	NQO1	ACC,CHOL,ESCA,GBM,KICH,LUAD,LUSC,PCPG		PCPG
ENSG00000177337	ENSG00000005075	POLR2J	BLCA,GBM,LGG,LIHC,THCA,THYM	GBM
ENSG00000177337	ENSG00000104883	PEX11G	BLCA,GBM,KICH,MESO,PCPG		PCPG
ENSG00000177337	ENSG00000121310	ECHDC2	BLCA,KICH,KIRP,LGG,PCPG,SARC		PCPG
ENSG00000177337	ENSG00000132199	ENOSF1	BLCA,BRCA,HNSC,KICH,LAML,OV,PAAD,PCPG,READ,TGCT		PCPG
ENSG00000177337	ENSG00000176834	VSIG10	BLCA,CHOL,KICH,LAML,PCPG,UVM		PCPG
ENSG00000177337	ENSG00000246705	H2AJ	BLCA,GBM,LGG,LIHC,MESO,PCPG,THCA		PCPG
ENSG00000177337	ENSG00000003509	NDUFAF7	CESC,CHOL,HNSC,LUSC,PCPG,STAD,THCA		PCPG
ENSG00000177337	ENSG00000101608	MYL12A	CESC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRP,LGG,OV,PAAD,PCPG,READ,TGCT	GBM	PCPG
ENSG00000177337	ENSG00000124570	SERPINB6	CESC,CHOL,GBM,KICH,LGG	GBM
ENSG00000177337	ENSG00000134825	TMEM258	CESC,GBM,HNSC,THCA,THYM	GBM
ENSG00000177337	ENSG00000135845	PIGC	CESC,CHOL,ESCA,GBM,HNSC,KICH,KIRP,LGG,READ,THCA,UVM	GBM
ENSG00000177337	ENSG00000139832	RAB20	CESC,KICH,PCPG,PRAD,TGCT		PCPG
ENSG00000177337	ENSG00000140264	SERF2	CESC,GBM,LGG,TGCT,THCA,THYM	GBM
ENSG00000177337	ENSG00000168273	SMIM4	CESC,GBM,LGG,LIHC,LUSC,PCPG,THCA,UVM	GBM	PCPG
ENSG00000177337	ENSG00000181924	COA4	CESC,GBM,KICH,LIHC,THCA,THYM	GBM
ENSG00000177337	ENSG00000185088	RPS27L	CESC,GBM,PCPG,SARC,THCA,THYM	GBM
ENSG00000177337	ENSG00000204257	HLA-DMA	CESC,GBM,KICH,LGG,TGCT	GBM
ENSG00000177337	ENSG00000213614	HEXA	CESC,GBM,LIHC,TGCT,THCA	GBM
ENSG00000177337	ENSG00000061273	HDAC7	CHOL,KICH,KIRP,LAML,PCPG,THYM		PCPG
ENSG00000177337	ENSG00000062716	VMP1	CHOL,GBM,KICH,KIRP,LIHC,PCPG,PRAD	GBM
ENSG00000177337	ENSG00000070785	EIF2B3	CHOL,KICH,LIHC,PCPG,THYM		PCPG
ENSG00000177337	ENSG00000089060	SLC8B1	CHOL,LGG,PCPG,PRAD,THCA,THYM		PCPG
ENSG00000177337	ENSG00000102172	SMS	CHOL,HNSC,KICH,LGG,LUSC,PAAD,PCPG		PCPG
ENSG00000177337	ENSG00000104518	GSDMD	CHOL,DLBC,GBM,KICH,LGG,THCA,THYM	GBM
ENSG00000177337	ENSG00000106399	RPA3	CHOL,GBM,KICH,LGG,LIHC,THYM	GBM
ENSG00000177337	ENSG00000109065	NAT9	CHOL,HNSC,KIRC,LIHC,PCPG,THCA		PCPG
ENSG00000177337	ENSG00000110700	RPS13	CHOL,GBM,KICH,THCA,THYM	GBM
ENSG00000177337	ENSG00000116815	CD58	CHOL,GBM,KICH,LGG,SARC,TGCT	GBM
ENSG00000177337	ENSG00000116863	ADPRS	CHOL,KICH,LGG,PCPG,THCA		PCPG
ENSG00000177337	ENSG00000117862	TXNDC12	CHOL,GBM,HNSC,KICH,LGG,PAAD	GBM
ENSG00000177337	ENSG00000123349	PFDN5	CHOL,GBM,KICH,LIHC,PRAD,THCA,THYM	GBM
ENSG00000177337	ENSG00000123609	NMI	CHOL,GBM,KICH,LGG,PCPG	GBM	PCPG
ENSG00000177337	ENSG00000125378	BMP4	CHOL,KICH,PCPG,STAD,UVM		PCPG
ENSG00000177337	ENSG00000125457	MIF4GD	CHOL,GBM,HNSC,KICH,MESO,SARC,THYM	GBM
ENSG00000177337	ENSG00000125733	TRIP10	CHOL,KICH,LGG,PCPG,PRAD,THCA		PCPG
ENSG00000177337	ENSG00000126756	UXT	CHOL,GBM,PCPG,PRAD,THCA,THYM	GBM
ENSG00000177337	ENSG00000127125	PPCS	CHOL,GBM,KICH,LGG,PCPG,TGCT		PCPG
ENSG00000177337	ENSG00000138085	ATRAID	CHOL,GBM,HNSC,KICH,LGG,LIHC,MESO,STAD,THCA	GBM
ENSG00000177337	ENSG00000139974	SLC38A6	CHOL,GBM,HNSC,LIHC,TGCT	GBM
ENSG00000177337	ENSG00000142856	ITGB3BP	CHOL,GBM,KICH,KIRP,LGG,LIHC	GBM
ENSG00000177337	ENSG00000142937	RPS8	CHOL,KICH,LIHC,PCPG,THCA,THYM		PCPG
ENSG00000177337	ENSG00000143947	RPS27A	CHOL,GBM,KICH,THCA,THYM	GBM
ENSG00000177337	ENSG00000144034	TPRKB	CHOL,GBM,HNSC,KICH,LIHC,THCA,THYM	GBM
ENSG00000177337	ENSG00000147400	CETN2	CHOL,GBM,KICH,LGG,LIHC,MESO,STAD	GBM
ENSG00000177337	ENSG00000150281	CTF1	CHOL,GBM,HNSC,KICH,KIRC,LGG,OV,PAAD,THCA	GBM
ENSG00000177337	ENSG00000150433	TMEM218	CHOL,GBM,HNSC,KICH,KIRP,LGG,LUSC,PCPG	GBM	PCPG
ENSG00000177337	ENSG00000153179	RASSF3	CHOL,KICH,PCPG,SARC,TGCT,UCS		PCPG
ENSG00000177337	ENSG00000156171	DRAM2	CHOL,GBM,KICH,LGG,TGCT	GBM
ENSG00000177337	ENSG00000159596	TMEM69	CHOL,GBM,KICH,LGG,LIHC,PCPG		PCPG
ENSG00000177337	ENSG00000170175	CHRNB1	CHOL,GBM,KICH,PCPG,UCS		PCPG
ENSG00000177337	ENSG00000172171	TEFM	CHOL,GBM,KICH,LIHC,LUSC	GBM
ENSG00000177337	ENSG00000174021	GNG5	CHOL,GBM,KICH,LGG,PAAD,THCA,THYM	GBM
ENSG00000177337	ENSG00000174547	MRPL11	CHOL,GBM,LIHC,THCA,THYM	GBM
ENSG00000177337	ENSG00000175334	BANF1	CHOL,GBM,KIRP,THCA,THYM	GBM
ENSG00000177337	ENSG00000177989	ODF3B	CHOL,GBM,LGG,MESO,PRAD,SARC,TGCT	GBM
ENSG00000177337	ENSG00000182718	ANXA2	CHOL,GBM,KICH,LGG,PCPG	GBM
ENSG00000177337	ENSG00000196981	WDR5B	CHOL,COAD,GBM,KIRP,LAML,LUSC,READ,STAD	GBM
ENSG00000177337	ENSG00000198001	IRAK4	CHOL,GBM,LGG,TGCT,THYM	GBM
ENSG00000177337	ENSG00000198892	SHISA4	CHOL,KICH,LIHC,PCPG,SARC		PCPG
ENSG00000177337	ENSG00000241127	YAE1	CHOL,GBM,KICH,KIRP,LAML,THCA	GBM
ENSG00000177337	ENSG00000090581	GNPTG	DLBC,GBM,PCPG,TGCT,THCA		PCPG
ENSG00000177337	ENSG00000130755	GMFG	DLBC,GBM,KICH,LGG,TGCT,THYM	GBM
ENSG00000177337	ENSG00000169714	CNBP	DLBC,GBM,KICH,PCPG,SARC		PCPG
ENSG00000177337	ENSG00000185475	TMEM179B	DLBC,GBM,KICH,LGG,THCA	GBM
ENSG00000177337	ENSG00000196154	S100A4	DLBC,GBM,KICH,KIRC,LGG,TGCT,THYM	GBM
ENSG00000177337	ENSG00000217555	CKLF	DLBC,GBM,KICH,LGG,LIHC,TGCT,THYM,UVM	GBM
ENSG00000177337	ENSG00000135211	TMEM60	ESCA,GBM,HNSC,THCA,THYM	GBM
ENSG00000177337	ENSG00000051523	CYBA	GBM,KICH,LGG,MESO,TGCT,THCA,THYM	GBM
ENSG00000177337	ENSG00000051620	HEBP2	GBM,KICH,KIRP,LGG,THCA	GBM
ENSG00000177337	ENSG00000068079	IFI35	GBM,KICH,PCPG,PRAD,SARC	GBM
ENSG00000177337	ENSG00000092010	PSME1	GBM,KICH,PCPG,TGCT,THCA,THYM	GBM
ENSG00000177337	ENSG00000092841	MYL6	GBM,KICH,SARC,THCA,THYM	GBM
ENSG00000177337	ENSG00000100209	HSCB	GBM,HNSC,PCPG,PRAD,THCA	GBM
ENSG00000177337	ENSG00000103811	CTSH	GBM,KICH,MESO,PCPG,TGCT		PCPG
ENSG00000177337	ENSG00000111348	ARHGDIB	GBM,KICH,LGG,SARC,TGCT,THYM	GBM
ENSG00000177337	ENSG00000115541	HSPE1	GBM,HNSC,LGG,LIHC,PCPG,UVM	GBM	PCPG
ENSG00000177337	ENSG00000118640	VAMP8	GBM,KICH,LGG,MESO,PRAD,TGCT,THCA	GBM
ENSG00000177337	ENSG00000120656	TAF12	GBM,KICH,LGG,LIHC,THCA	GBM
ENSG00000177337	ENSG00000126088	UROD	GBM,KICH,LGG,LIHC,PCPG,THCA,THYM		PCPG
ENSG00000177337	ENSG00000126458	RRAS	GBM,KICH,LGG,SARC,TGCT,THCA	GBM
ENSG00000177337	ENSG00000127922	SEM1	GBM,LGG,LIHC,THCA,THYM	GBM
ENSG00000177337	ENSG00000133112	TPT1	GBM,KICH,PCPG,TGCT,THCA,THYM	GBM	PCPG
ENSG00000177337	ENSG00000137752	CASP1	GBM,KICH,LGG,SARC,TGCT	GBM
ENSG00000177337	ENSG00000143106	PSMA5	GBM,KICH,LIHC,PAAD,PCPG,THYM		PCPG
ENSG00000177337	ENSG00000145337	PYURF	GBM,LGG,MESO,THCA,THYM	GBM
ENSG00000177337	ENSG00000157191	NECAP2	GBM,KICH,LGG,TGCT,THYM	GBM
ENSG00000177337	ENSG00000160124	MIX23	GBM,HNSC,LIHC,PCPG,THCA	GBM	PCPG
ENSG00000177337	ENSG00000162542	TMCO4	GBM,LGG,PAAD,PCPG,TGCT	GBM	PCPG
ENSG00000177337	ENSG00000163191	S100A11	GBM,KICH,KIRC,KIRP,LGG,PRAD,THCA	GBM
ENSG00000177337	ENSG00000164039	BDH2	GBM,HNSC,LGG,PCPG,THCA		PCPG
ENSG00000177337	ENSG00000168899	VAMP5	GBM,KICH,LGG,MESO,PCPG,TGCT,THYM	GBM
ENSG00000177337	ENSG00000175938	ORAI3	GBM,HNSC,LGG,OV,TGCT,THCA	GBM
ENSG00000177337	ENSG00000188243	COMMD6	GBM,KICH,PCPG,PRAD,THCA,THYM	GBM	PCPG
ENSG00000177337	ENSG00000196954	CASP4	GBM,KICH,PCPG,PRAD,TGCT	GBM
ENSG00000177337	ENSG00000213719	CLIC1	GBM,KICH,LGG,THCA,THYM	GBM
ENSG00000177337	ENSG00000213977	TAX1BP3	GBM,KICH,LGG,PCPG,PRAD,THCA	GBM	PCPG
ENSG00000177337	ENSG00000259494	MRPL46	GBM,LUAD,PCPG,SARC,THCA		PCPG
ENSG00000177337	ENSG00000277972	CISD3	GBM,KICH,LIHC,LUSC,PCPG		PCPG
ENSG00000177337	ENSG00000053372	MRTO4	KICH,LIHC,PCPG,THCA,THYM		PCPG
ENSG00000177337	ENSG00000090273	NUDC	KICH,LGG,LIHC,PCPG,THCA,THYM		PCPG
ENSG00000177337	ENSG00000132906	CASP9	KICH,KIRC,LUAD,MESO,PCPG,THCA,UCS		PCPG
ENSG00000177337	ENSG00000139178	C1RL	KICH,LAML,LGG,PCPG,SARC		PCPG
ENSG00000177337	ENSG00000163874	ZC3H12A	KICH,MESO,PAAD,PCPG,TGCT		PCPG
ENSG00000177337	ENSG00000169189	NSMCE1	KICH,LIHC,PAAD,PCPG,THCA,THYM		PCPG
ENSG00000177337	ENSG00000023902	PLEKHO1	LGG,PCPG,SARC,TGCT,THYM,UVM		PCPG
ENSG00000177337	ENSG00000121966	CXCR4	LGG,PCPG,TGCT,THYM,UVM		PCPG
ENSG00000177337	ENSG00000100294	MCAT	LIHC,MESO,PCPG,THCA,THYM		PCPG
ENSG00000177337	ENSG00000167515	TRAPPC2L	LIHC,MESO,PCPG,THCA,UVM		PCPG

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000177337	ENST00000577995	MARK4	ENSG00000007047	ENST00000592762	-0.1201	103	PCPG	GBM
ENSG00000177337	ENST00000577995	ACVR1B	ENSG00000135503	ENST00000541224	-0.1428	228	PCPG	GBM
ENSG00000177337	ENST00000577995	EVI5L	ENSG00000142459	ENST00000599036	-0.2356	333	-	GBM
ENSG00000177337	ENST00000577995	MYCBP2	ENSG00000005810	ENST00000466564	-0.2084	307	-	GBM
ENSG00000177337	ENST00000577995	GPHN	ENSG00000171723	ENST00000543237	-0.1939	96	-	GBM
ENSG00000177337	ENST00000577995	GPHN	ENSG00000171723	ENST00000553936	-0.1096	1	-	GBM
ENSG00000177337	ENST00000577995	GPHN	ENSG00000171723	ENST00000555503	-0.1753	313	-	GBM
ENSG00000177337	ENST00000577995	ATRN	ENSG00000088812	ENST00000446916	-0.1532	81	-	GBM
ENSG00000177337	ENST00000577995	HECTD1	ENSG00000092148	ENST00000554471	-0.1326	295	-	GBM
ENSG00000177337	ENST00000577995	ARHGEF9	ENSG00000131089	ENST00000374872	-0.2081	37	PCPG	GBM
ENSG00000177337	ENST00000577995	ARHGEF9	ENSG00000131089	ENST00000624843	-0.1943	116	PCPG	GBM
ENSG00000177337	ENST00000577995	FAM168B	ENSG00000152102	ENST00000389915	-0.1449	254	-	GBM
ENSG00000177337	ENST00000577995	LARP1	ENSG00000155506	ENST00000518892	-0.1226	1	-	GBM
ENSG00000177337	ENST00000577995	TTC3	ENSG00000182670	ENST00000540756	-1.9350	111	-	GBM
ENSG00000177337	ENST00000577995	TTC3	ENSG00000182670	ENST00000428693	-0.1539	348	-	GBM
ENSG00000177337	ENST00000577995	CLASP2	ENSG00000163539	ENST00000487553	-0.1038	30	PCPG	GBM
ENSG00000177337	ENST00000577995	CLASP2	ENSG00000163539	ENST00000313350	-0.4895	1	PCPG	GBM
ENSG00000177337	ENST00000575606	MARK4	ENSG00000007047	ENST00000592762	-0.1008	150	PCPG	GBM
ENSG00000177337	ENST00000575606	ACVR1B	ENSG00000135503	ENST00000541224	-0.1240	76	PCPG	GBM
ENSG00000177337	ENST00000575606	EVI5L	ENSG00000142459	ENST00000599036	-0.2897	166	-	GBM
ENSG00000177337	ENST00000575606	MYCBP2	ENSG00000005810	ENST00000466564	-0.2088	1	-	GBM
ENSG00000177337	ENST00000575606	GPHN	ENSG00000171723	ENST00000543237	-0.1511	83	-	GBM
ENSG00000177337	ENST00000575606	GPHN	ENSG00000171723	ENST00000555503	-0.3371	211	-	GBM
ENSG00000177337	ENST00000575606	ATRN	ENSG00000088812	ENST00000446916	-0.1529	44	-	GBM
ENSG00000177337	ENST00000575606	ARHGEF9	ENSG00000131089	ENST00000253401	-0.1012	1	PCPG	GBM
ENSG00000177337	ENST00000575606	ARHGEF9	ENSG00000131089	ENST00000374870	-0.1012	1	PCPG	GBM
ENSG00000177337	ENST00000575606	ARHGEF9	ENSG00000131089	ENST00000624210	-0.1005	1	PCPG	GBM
ENSG00000177337	ENST00000575606	ARHGEF9	ENSG00000131089	ENST00000374872	-0.8100	259	PCPG	GBM
ENSG00000177337	ENST00000575606	ARHGEF9	ENSG00000131089	ENST00000624843	-0.6400	70	PCPG	GBM
ENSG00000177337	ENST00000575606	UBR3	ENSG00000144357	ENST00000439681	-0.1238	196	-	GBM
ENSG00000177337	ENST00000575606	FAM168B	ENSG00000152102	ENST00000389915	-0.1904	14	-	GBM
ENSG00000177337	ENST00000575606	LARP1	ENSG00000155506	ENST00000518892	-0.1027	1	-	GBM
ENSG00000177337	ENST00000575606	LMTK2	ENSG00000164715	ENST00000297293	-0.1018	1	-	GBM
ENSG00000177337	ENST00000575606	TTC3	ENSG00000182670	ENST00000540756	-1.6767	17	-	GBM
ENSG00000177337	ENST00000575606	TTC3	ENSG00000182670	ENST00000428693	-0.1240	240	-	GBM
ENSG00000177337	ENST00000576606	MARK4	ENSG00000007047	ENST00000592762	-0.1008	197	PCPG	GBM
ENSG00000177337	ENST00000576606	ACVR1B	ENSG00000135503	ENST00000541224	-0.1015	91	PCPG	GBM
ENSG00000177337	ENST00000576606	ACVR1B	ENSG00000135503	ENST00000415850	-0.1123	1	PCPG	GBM
ENSG00000177337	ENST00000576606	EVI5L	ENSG00000142459	ENST00000599036	-0.2897	213	-	GBM
ENSG00000177337	ENST00000576606	GPHN	ENSG00000171723	ENST00000543237	-0.1812	65	-	GBM
ENSG00000177337	ENST00000576606	GPHN	ENSG00000171723	ENST00000555503	-0.3371	258	-	GBM
ENSG00000177337	ENST00000576606	ATRN	ENSG00000088812	ENST00000446916	-0.1823	82	-	GBM
ENSG00000177337	ENST00000576606	ARHGEF9	ENSG00000131089	ENST00000374872	-0.8100	306	PCPG	GBM
ENSG00000177337	ENST00000576606	ARHGEF9	ENSG00000131089	ENST00000624843	-0.1943	126	PCPG	GBM
ENSG00000177337	ENST00000576606	SCAPER	ENSG00000140386	ENST00000564757	-0.4407	1	PCPG	GBM
ENSG00000177337	ENST00000576606	UBR3	ENSG00000144357	ENST00000272793	-0.1238	243	-	GBM
ENSG00000177337	ENST00000576606	UBR3	ENSG00000144357	ENST00000418381	-0.1238	243	-	GBM
ENSG00000177337	ENST00000576606	UBR3	ENSG00000144357	ENST00000392632	-0.1238	243	-	GBM
ENSG00000177337	ENST00000576606	UBR3	ENSG00000144357	ENST00000439681	-0.1238	243	-	GBM
ENSG00000177337	ENST00000576606	FAM168B	ENSG00000152102	ENST00000389915	-0.1904	1	-	GBM
ENSG00000177337	ENST00000576606	LARP1	ENSG00000155506	ENST00000518892	-0.1356	1	-	GBM
ENSG00000177337	ENST00000576606	TTC3	ENSG00000182670	ENST00000540756	-2.3300	88	-	GBM
ENSG00000177337	ENST00000576606	TTC3	ENSG00000182670	ENST00000428693	-0.1240	287	-	GBM
ENSG00000177337	ENST00000317114	MARK4	ENSG00000007047	ENST00000592762	-0.1388	1704	PCPG	GBM
ENSG00000177337	ENST00000317114	ACVR1B	ENSG00000135503	ENST00000541224	-0.1857	1778	PCPG	GBM
ENSG00000177337	ENST00000317114	ACVR1B	ENSG00000135503	ENST00000415850	-0.1073	1650	PCPG	GBM
ENSG00000177337	ENST00000317114	EVI5L	ENSG00000142459	ENST00000599036	-0.2272	1815	-	GBM
ENSG00000177337	ENST00000317114	MYCBP2	ENSG00000005810	ENST00000466564	-0.2084	315	-	GBM
ENSG00000177337	ENST00000317114	GPHN	ENSG00000171723	ENST00000543237	-0.1812	63	-	GBM
ENSG00000177337	ENST00000317114	GPHN	ENSG00000171723	ENST00000553936	-0.1682	1301	-	GBM
ENSG00000177337	ENST00000317114	GPHN	ENSG00000171723	ENST00000555503	-0.1753	321	-	GBM
ENSG00000177337	ENST00000317114	ATRN	ENSG00000088812	ENST00000446916	-0.2448	572	-	GBM
ENSG00000177337	ENST00000317114	ARHGEF9	ENSG00000131089	ENST00000466925	-0.1144	1761	PCPG	GBM
ENSG00000177337	ENST00000317114	ARHGEF9	ENSG00000131089	ENST00000374872	-0.4480	574	PCPG	GBM
ENSG00000177337	ENST00000317114	ARHGEF9	ENSG00000131089	ENST00000624843	-0.6008	1806	PCPG	GBM
ENSG00000177337	ENST00000317114	FAM168B	ENSG00000152102	ENST00000389915	-0.1824	1390	-	GBM
ENSG00000177337	ENST00000317114	LARP1	ENSG00000155506	ENST00000518892	-0.1099	1735	-	GBM
ENSG00000177337	ENST00000317114	TTC3	ENSG00000182670	ENST00000540756	-0.5822	1669	-	GBM
ENSG00000177337	ENST00000317114	TTC3	ENSG00000182670	ENST00000428693	-0.2615	1328	-	GBM
ENSG00000177337	ENST00000317114	CLASP2	ENSG00000163539	ENST00000313350	-0.1158	1847	PCPG	GBM
ENSG00000177337	ENST00000574411	MARK4	ENSG00000007047	ENST00000592762	-0.1076	36	PCPG	GBM
ENSG00000177337	ENST00000574411	ACVR1B	ENSG00000135503	ENST00000257963	-0.1021	1	PCPG	GBM
ENSG00000177337	ENST00000574411	ACVR1B	ENSG00000135503	ENST00000541224	-0.1364	114	PCPG	GBM
ENSG00000177337	ENST00000574411	ACVR1B	ENSG00000135503	ENST00000415850	-0.1037	87	PCPG	GBM
ENSG00000177337	ENST00000574411	EVI5L	ENSG00000142459	ENST00000599036	-0.2897	230	-	GBM
ENSG00000177337	ENST00000574411	GPHN	ENSG00000171723	ENST00000543237	-0.1333	32	-	GBM
ENSG00000177337	ENST00000574411	GPHN	ENSG00000171723	ENST00000555503	-0.2352	116	-	GBM
ENSG00000177337	ENST00000574411	ATRN	ENSG00000088812	ENST00000446916	-0.1529	11	-	GBM
ENSG00000177337	ENST00000574411	ARHGEF9	ENSG00000131089	ENST00000374872	-0.8100	323	PCPG	GBM
ENSG00000177337	ENST00000574411	ARHGEF9	ENSG00000131089	ENST00000624843	-0.6400	37	PCPG	GBM
ENSG00000177337	ENST00000574411	UBR3	ENSG00000144357	ENST00000439681	-0.1238	260	-	GBM
ENSG00000177337	ENST00000574411	FAM168B	ENSG00000152102	ENST00000389915	-0.1506	123	-	GBM
ENSG00000177337	ENST00000574411	TTC3	ENSG00000182670	ENST00000540756	-2.3300	73	-	GBM
ENSG00000177337	ENST00000574411	TTC3	ENSG00000182670	ENST00000428693	-0.2684	181	-	GBM
ENSG00000177337	ENST00000573355	MARK4	ENSG00000007047	ENST00000592762	-0.1707	1	PCPG	GBM
ENSG00000177337	ENST00000573355	MARK4	ENSG00000007047	ENST00000620044	-0.1188	1	PCPG	GBM
ENSG00000177337	ENST00000573355	ACVR1B	ENSG00000135503	ENST00000541224	-0.1364	30	PCPG	GBM
ENSG00000177337	ENST00000573355	ACVR1B	ENSG00000135503	ENST00000415850	-0.1160	3	PCPG	GBM
ENSG00000177337	ENST00000573355	EVI5L	ENSG00000142459	ENST00000270530	-0.1081	1	-	GBM
ENSG00000177337	ENST00000573355	EVI5L	ENSG00000142459	ENST00000599036	-0.3519	81	-	GBM
ENSG00000177337	ENST00000573355	GPHN	ENSG00000171723	ENST00000315266	-0.1105	1	-	GBM
ENSG00000177337	ENST00000573355	GPHN	ENSG00000171723	ENST00000478722	-0.1105	1	-	GBM
ENSG00000177337	ENST00000573355	GPHN	ENSG00000171723	ENST00000543237	-0.1236	4	-	GBM
ENSG00000177337	ENST00000573355	GPHN	ENSG00000171723	ENST00000553936	-0.1090	1	-	GBM
ENSG00000177337	ENST00000573355	GPHN	ENSG00000171723	ENST00000555503	-0.2352	32	-	GBM
ENSG00000177337	ENST00000573355	ATRN	ENSG00000088812	ENST00000446916	-0.1391	58	-	GBM
ENSG00000177337	ENST00000573355	HECTD1	ENSG00000092148	ENST00000555915	-0.1078	1	-	GBM
ENSG00000177337	ENST00000573355	ACO2	ENSG00000100412	ENST00000216254	-0.1690	1	-	GBM
ENSG00000177337	ENST00000573355	ACO2	ENSG00000100412	ENST00000396512	-0.1690	1	-	GBM
ENSG00000177337	ENST00000573355	GBF1	ENSG00000107862	ENST00000369983	-0.1079	1	-	GBM
ENSG00000177337	ENST00000573355	RAPGEF2	ENSG00000109756	ENST00000512056	-0.1395	1	PCPG	GBM
ENSG00000177337	ENST00000573355	ARHGEF9	ENSG00000131089	ENST00000253401	-0.1047	1	PCPG	GBM
ENSG00000177337	ENST00000573355	ARHGEF9	ENSG00000131089	ENST00000374870	-0.1047	1	PCPG	GBM
ENSG00000177337	ENST00000573355	ARHGEF9	ENSG00000131089	ENST00000374872	-0.4092	107	PCPG	GBM
ENSG00000177337	ENST00000573355	ARHGEF9	ENSG00000131089	ENST00000624843	-0.4092	110	PCPG	GBM
ENSG00000177337	ENST00000573355	NAA30	ENSG00000139977	ENST00000556492	-0.1108	1	-	GBM
ENSG00000177337	ENST00000573355	SCAPER	ENSG00000140386	ENST00000564757	-0.1264	1	PCPG	GBM
ENSG00000177337	ENST00000573355	SCAPER	ENSG00000140386	ENST00000565507	-0.1295	1	PCPG	GBM
ENSG00000177337	ENST00000573355	UBR3	ENSG00000144357	ENST00000272793	-0.1197	1	-	GBM
ENSG00000177337	ENST00000573355	UBR3	ENSG00000144357	ENST00000418381	-0.1197	1	-	GBM
ENSG00000177337	ENST00000573355	UBR3	ENSG00000144357	ENST00000430321	-0.1040	1	-	GBM
ENSG00000177337	ENST00000573355	UBR3	ENSG00000144357	ENST00000392632	-0.1197	1	-	GBM
ENSG00000177337	ENST00000573355	UBR3	ENSG00000144357	ENST00000444475	-0.1011	1	-	GBM
ENSG00000177337	ENST00000573355	FAM168B	ENSG00000152102	ENST00000409185	-0.1263	1	-	GBM
ENSG00000177337	ENST00000573355	FAM168B	ENSG00000152102	ENST00000389915	-0.1506	39	-	GBM
ENSG00000177337	ENST00000573355	LARP1	ENSG00000155506	ENST00000336314	-0.1152	1	-	GBM
ENSG00000177337	ENST00000573355	LARP1	ENSG00000155506	ENST00000521577	-0.1120	1	-	GBM
ENSG00000177337	ENST00000573355	LARP1	ENSG00000155506	ENST00000518677	-0.3335	1	-	GBM
ENSG00000177337	ENST00000573355	LMTK2	ENSG00000164715	ENST00000297293	-0.1396	1	-	GBM
ENSG00000177337	ENST00000573355	FASN	ENSG00000169710	ENST00000580382	-0.1005	1	-	GBM
ENSG00000177337	ENST00000573355	TTC3	ENSG00000182670	ENST00000540756	-0.5575	71	-	GBM
ENSG00000177337	ENST00000573355	TTC3	ENSG00000182670	ENST00000428693	-0.2684	97	-	GBM
ENSG00000177337	ENST00000573355	CLASP2	ENSG00000163539	ENST00000468888	-0.1039	1	PCPG	GBM
ENSG00000177337	ENST00000573355	CLASP2	ENSG00000163539	ENST00000399362	-0.1039	1	PCPG	GBM
ENSG00000177337	ENST00000573355	CLASP2	ENSG00000163539	ENST00000359576	-0.1039	1	PCPG	GBM

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000177337.6	ENST00000577995.4	46	108	248
ENSG00000177337.6	ENST00000575606.4	67	89	292
ENSG00000177337.6	ENST00000576606.4	53	25	186
ENSG00000177337.6	ENST00000317114.1	79	7	246
ENSG00000177337.6	ENST00000574411.4	132	443	841
ENSG00000177337.6	ENST00000573355.1	72	4	222

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential