 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | USP43,LY6E | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_216331 | ENSG00000177335.9 | chr8 | 143050391 | + | processed_transcript | C8orf31 | ENST00000524181.4 | lincRNA | C8orf31-002 |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000177335 | LncEditing_216331 | 5.349968e-01 | 3.988298e-02 | 4.639433e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000177335 | C8orf31 | rs7002986:144122357:G:A | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs11136300:144124609:T:C | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs6997455:144125727:T:A | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs12677840:144130430:C:G | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs7829801:144133433:C:T | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs11136304:144128157:T:C | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs11774844:144133401:G:A | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs11994636:144128221:G:A | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs11990478:144128228:T:C | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs7015223:144132469:A:G:+ | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs72695021:144127500:C:T | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs74567557:144128714:G:A | 1 | THCA | 0 | | | ENSG00000177335 | C8orf31 | rs7829903:144192016:T:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs11985927:144187645:A:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs4305880:144188997:A:G | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs55985912:144185799:A:G | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs7816760:144184077:T:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs56090455:144178490:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs10104005:144174038:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs55947314:144177032:G:A | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs56102934:144177207:T:G | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs28715464:144178093:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs56280739:144170896:G:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs74307503:144180108:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs77627829:144179843:G:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs3922889:144174928:G:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs4286929:144181153:A:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs7822363:144178953:A:G | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs74992492:144179749:G:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs76745515:144179837:G:A | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs79126372:144179940:C:G | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs80279064:144190196:G:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs74386176:144179740:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs61573766:144164512:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs7836843:144158917:G:C | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs77365286:144160176:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs55951527:144182452:C:T | 1 | LGG | 0 | | | ENSG00000177335 | C8orf31 | rs12677931:144201664:A:C:- | 0 | | 1 | LGG | | ENSG00000177335 | C8orf31 | rs77558610:144195889:C:G | 1 | LGG | 0 | |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000177335 | ENSG00000160932 | LY6E | BLCA,CESC,OV,PAAD,STAD,TGCT,UCEC | BLCA,STAD | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000177335.9 | ENST00000517653.4 | 125 | 238 | 615 | | ENSG00000177335.9 | ENST00000523766.4 | 195 | 715 | 128 | | ENSG00000177335.9 | ENST00000523099.4 | 80 | 318 | 76 | | ENSG00000177335.9 | ENST00000524181.4 | 119 | 435 | 76 | | ENSG00000177335.9 | ENST00000395172.4 | 153 | 537 | 76 | | ENSG00000177335.9 | ENST00000519775.2 | 167 | 578 | 75 | | ENSG00000177335.9 | ENST00000520786.2 | 75 | 226 | 2 | | ENSG00000177335.9 | ENST00000622366.3 | 128 | 384 | 1 |
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