 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,SLIRP,ILF3,GLI4,RBM39,MYPOP,GRSF1,IRF3,CIRBP,LCORL,IMP3,TIGD5,MZF1,NRF1,THOC3,SUGP2,TRUB2,CXXC5,ZNF77,ZNF74,TBP,SRP68,SAFB2,THOC1,LSM3,LARP7,CHTOP,TFAP4,LSM5,ZBED5,CENPT,PUF60,ZNF44,LSM4,RBMX,RBM4B,U2AF2,CSTF3,TCFL5,CPSF1,RNPS1,ERAL1,NR2F6,ZBTB3,CWC15,SURF6,DHX34,PPIE,SF3B6,NELFE,THAP9,USF1,CXXC1,ZNF34,PATZ1,CSTF1,HSF1,ZNF22,PHF1,THYN1,ZC3H8,DEAF1,TGIF2,HSF4,NOL9,THOC6,ZNF48,SGSM2,ATF4,REXO4,TIGD1,RBM45,DDX51,PCBP4,THAP3,APEX1,SRSF2,ZNF83,ZNF3,NXF1,ZNF18,GPBP1,RBM6,HMGN3,CPSF3,E2F1,RBM5,NFYB,ZNF84,PIN1,RXRB,RBM8A,NAIF1,DDX41,HINFP,XPA,THOC7,SFPQ,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | RRP7BP,CWC15,NR2F6,ZNF48,MZF1,ZNF18,E4F1,RBM5,CXXC1,U2AF2,MSX1,TFAP4,TERF1,PATZ1,ZNF3,SRSF1,ZNF83,USF1,DHX30,RBM6,MYPOP,DHX34,TCFL5,ZNF30,RBM39,THAP3,HINFP,CIRBP,LCORL,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ARNT | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000170846 | ENST00000444232 | exon_skip_361485 | chr21:29008239-29008307 | -12.55 | -0.2282 | RWDD2B | ENST00000493196 | Frame-shift | | ENSG00000170846 | ENST00000444232 | exon_skip_133217 | chr16:8635038-8635079 | -16.05 | -0.8447 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000170846 | ENST00000444232 | exon_skip_153767 | chr17:48057031-48057121 | -17.20 | -0.2293 | NFE2L1 | ENST00000362042 | In-frame | | ENSG00000170846 | ENST00000444232 | exon_skip_462144 | chr6:125298713-125298816 | -17.79 | -0.2616 | HDDC2 | ENST00000398153 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6675475-6675572 | 191.00 | -88.20 | 96 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6673803-6673894 | 188.00 | -75.87 | 90 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674486-6674576 | 182.00 | -100.48 | 94 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6675048-6675138 | 171.00 | -72.86 | 80 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674103-6674191 | 169.00 | -92.07 | 85 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674395-6674476 | 165.00 | -100.15 | 86 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674312-6674385 | 164.00 | -89.66 | 83 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674649-6674735 | 164.00 | -85.38 | 87 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674011-6674103 | 163.00 | -87.03 | 89 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674196-6674277 | 163.00 | -91.74 | 85 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6675287-6675375 | 162.00 | -61.92 | 84 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6673452-6673526 | 160.00 | -64.08 | 80 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6673601-6673686 | 156.00 | -58.10 | 85 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674895-6674992 | 154.00 | -78.81 | 94 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6673920-6674011 | 152.00 | -102.63 | 93 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6673684-6673774 | 151.00 | -81.15 | 89 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6675580-6675661 | 151.00 | -69.06 | 79 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6674785-6674875 | 146.00 | -63.04 | 79 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6675203-6675274 | 144.00 | -68.34 | 80 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000307533 | chr4:6675399-6675475 | 141.00 | -64.28 | 84 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6675406-6675503 | 191.00 | -88.20 | 96 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6673803-6673894 | 188.00 | -75.87 | 90 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674486-6674576 | 182.00 | -100.48 | 94 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674979-6675069 | 171.00 | -72.86 | 80 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674103-6674191 | 169.00 | -92.07 | 85 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674598-6674691 | 169.00 | -87.37 | 90 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674395-6674476 | 165.00 | -100.15 | 86 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674312-6674385 | 164.00 | -89.66 | 83 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674011-6674103 | 163.00 | -87.03 | 89 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674196-6674277 | 163.00 | -91.74 | 85 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6675218-6675306 | 162.00 | -61.92 | 84 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6673452-6673526 | 160.00 | -64.08 | 80 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6673601-6673686 | 156.00 | -58.10 | 85 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674826-6674923 | 154.00 | -78.81 | 94 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6673920-6674011 | 152.00 | -102.63 | 93 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6673684-6673774 | 151.00 | -81.15 | 89 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6675511-6675592 | 151.00 | -69.06 | 79 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6674716-6674806 | 146.00 | -63.04 | 79 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6675134-6675205 | 144.00 | -68.34 | 80 | NA | | ENSG00000170846 | hsa-mir-22 | ENST00000444232 | chr4:6675330-6675406 | 141.00 | -64.28 | 84 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000167967 | E4F1 | 6 | ACC,CHOL,HNSC,KIRP,LIHC,PAAD | | ENSG00000170846 | ENSG00000158773 | USF1 | ENSG00000167967 | E4F1 | 7 | CHOL,DLBC,HNSC,KIRP,LGG,LIHC,THCA | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000154832 | CXXC1 | 5 | CHOL,HNSC,KIRP,LIHC,PAAD | | ENSG00000170846 | ENSG00000158773 | USF1 | ENSG00000154832 | CXXC1 | 6 | CHOL,HNSC,KIRP,LGG,LIHC,THCA | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000063244 | U2AF2 | 6 | ACC,CHOL,HNSC,KIRP,LIHC,PAAD | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000166526 | ZNF3 | 5 | ACC,CHOL,HNSC,KIRP,LIHC | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000176182 | MYPOP | 5 | ACC,HNSC,KIRP,LIHC,PAAD | | ENSG00000170846 | ENSG00000158773 | USF1 | ENSG00000134815 | DHX34 | 5 | CHOL,HNSC,KIRP,LIHC,THCA | | ENSG00000170846 | ENSG00000158773 | USF1 | ENSG00000041988 | THAP3 | 8 | CHOL,DLBC,ESCA,HNSC,KIRP,LGG,LIHC,THCA | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000172273 | HINFP | 5 | CHOL,HNSC,KIRP,LIHC,PAAD | | ENSG00000170846 | ENSG00000130254 | SAFB2 | ENSG00000099622 | CIRBP | 5 | ACC,CHOL,HNSC,KIRP,PAAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000170846.14 | ENST00000307533.9 | 76 | 98 | 328 | | ENSG00000170846.14 | ENST00000444232.2 | 233 | 1072 | 371 |
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