 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | PLS1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_331676 | ENSG00000167117.7 | chr17 | 50761125 | - | processed_transcript | LINC00483 | ENST00000300458.1 | retained_intron | LINC00483-001 | | LncEditing_331678 | ENSG00000167117.7 | chr17 | 50761132 | - | processed_transcript | LINC00483 | ENST00000300458.1 | retained_intron | LINC00483-001 | | LncEditing_331681 | ENSG00000167117.7 | chr17 | 50761142 | - | processed_transcript | LINC00483 | ENST00000300458.1 | retained_intron | LINC00483-001 | | LncEditing_331687 | ENSG00000167117.7 | chr17 | 50761160 | - | processed_transcript | LINC00483 | ENST00000300458.1 | retained_intron | LINC00483-001 | | LncEditing_331689 | ENSG00000167117.7 | chr17 | 50761168 | - | processed_transcript | LINC00483 | ENST00000300458.1 | retained_intron | LINC00483-001 | | LncEditing_331698 | ENSG00000167117.7 | chr17 | 50761203 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331700 | ENSG00000167117.7 | chr17 | 50761207 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331702 | ENSG00000167117.7 | chr17 | 50761210 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331704 | ENSG00000167117.7 | chr17 | 50761211 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331706 | ENSG00000167117.7 | chr17 | 50761212 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331708 | ENSG00000167117.7 | chr17 | 50761213 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331712 | ENSG00000167117.7 | chr17 | 50761216 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331746 | ENSG00000167117.7 | chr17 | 50761275 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331748 | ENSG00000167117.7 | chr17 | 50761280 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331752 | ENSG00000167117.7 | chr17 | 50761290 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331756 | ENSG00000167117.7 | chr17 | 50761299 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331758 | ENSG00000167117.7 | chr17 | 50761303 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 | | LncEditing_331766 | ENSG00000167117.7 | chr17 | 50761320 | - | processed_transcript | LINC00483 | ENST00000450727.4 | lincRNA | LINC00483-003 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000167117 | LncEditing_331681 | COAD | chr17_50761142_- | 5.329664e+00 | 2.864303e+00 | 1.116245e+00 | 9.175150e+00 | 4.509477e-20 | 1.574621e-19 | UP | | ENSG00000167117 | LncEditing_331687 | COAD | chr17_50761160_- | 4.536091e+00 | 2.166393e+00 | 9.379504e-01 | 1.209662e+01 | 1.100545e-33 | 1.803200e-32 | UP | | ENSG00000167117 | LncEditing_331689 | COAD | chr17_50761168_- | 4.485396e+00 | 1.968462e+00 | 8.416331e-01 | 1.305238e+01 | 6.159251e-39 | 1.639900e-37 | UP | | ENSG00000167117 | LncEditing_331698 | COAD | chr17_50761203_- | 4.841764e+00 | 2.677184e+00 | 1.169842e+00 | 9.958922e+00 | 2.305480e-23 | 1.271502e-22 | UP | | ENSG00000167117 | LncEditing_331700 | COAD | chr17_50761207_- | 4.984848e+00 | 2.717101e+00 | 1.142228e+00 | 9.698302e+00 | 3.065576e-22 | 1.451039e-21 | UP | | ENSG00000167117 | LncEditing_331704 | COAD | chr17_50761211_- | 4.930664e+00 | 2.951304e+00 | 1.350568e+00 | 7.359509e+00 | 1.845883e-13 | 3.780510e-13 | UP | | ENSG00000167117 | LncEditing_331708 | COAD | chr17_50761213_- | 4.687208e+00 | 2.043030e+00 | 8.347119e-01 | 1.357528e+01 | 5.613074e-42 | 1.992641e-40 | UP | | ENSG00000167117 | LncEditing_331712 | COAD | chr17_50761216_- | 4.863449e+00 | 2.514061e+00 | 1.050464e+00 | 1.130934e+01 | 1.179729e-29 | 1.478131e-28 | UP | | ENSG00000167117 | LncEditing_331746 | COAD | chr17_50761275_- | 4.318384e+00 | 2.893005e+00 | 1.730335e+00 | 7.026072e+00 | 2.124296e-12 | 3.867308e-12 | UP | | ENSG00000167117 | LncEditing_331748 | COAD | chr17_50761280_- | 4.182583e+00 | 1.834628e+00 | 8.411091e-01 | 1.219777e+01 | 3.194460e-34 | 6.185636e-33 | UP | | ENSG00000167117 | LncEditing_331752 | COAD | chr17_50761290_- | 5.116752e+00 | 2.979207e+00 | 1.281559e+00 | 7.300901e+00 | 2.858477e-13 | 5.798625e-13 | UP | | ENSG00000167117 | LncEditing_331758 | COAD | chr17_50761303_- | 4.450292e+00 | 2.557687e+00 | 1.251470e+00 | 9.837355e+00 | 7.772717e-23 | 4.138972e-22 | UP | | ENSG00000167117 | LncEditing_331678 | READ | chr17_50761132_- | 5.196540e+00 | 3.166223e+00 | 1.399015e+00 | 3.403080e+00 | 6.663081e-04 | 8.186071e-04 | UP | | ENSG00000167117 | LncEditing_331681 | READ | chr17_50761142_- | 5.299537e+00 | 2.831289e+00 | 1.105696e+00 | 5.677827e+00 | 1.364162e-08 | 4.888249e-08 | UP | | ENSG00000167117 | LncEditing_331687 | READ | chr17_50761160_- | 4.361301e+00 | 2.273359e+00 | 1.063906e+00 | 6.939100e+00 | 3.946052e-12 | 3.992476e-11 | UP | | ENSG00000167117 | LncEditing_331689 | READ | chr17_50761168_- | 4.218712e+00 | 2.142841e+00 | 1.023251e+00 | 7.025214e+00 | 2.137387e-12 | 2.297691e-11 | UP | | ENSG00000167117 | LncEditing_331698 | READ | chr17_50761203_- | 4.857983e+00 | 2.774766e+00 | 1.237638e+00 | 6.197414e+00 | 5.739851e-10 | 2.903689e-09 | UP | | ENSG00000167117 | LncEditing_331700 | READ | chr17_50761207_- | 5.202149e+00 | 2.643926e+00 | 1.024143e+00 | 6.698938e+00 | 2.099390e-11 | 1.569978e-10 | UP | | ENSG00000167117 | LncEditing_331704 | READ | chr17_50761211_- | 4.749661e+00 | 3.066356e+00 | 1.584034e+00 | 3.936997e+00 | 8.250766e-05 | 1.252482e-04 | UP | | ENSG00000167117 | LncEditing_331708 | READ | chr17_50761213_- | 4.404092e+00 | 2.200724e+00 | 9.991341e-01 | 7.669296e+00 | 1.729427e-14 | 3.963810e-13 | UP | | ENSG00000167117 | LncEditing_331712 | READ | chr17_50761216_- | 4.754831e+00 | 2.539332e+00 | 1.105040e+00 | 6.404716e+00 | 1.506500e-10 | 8.935102e-10 | UP | | ENSG00000167117 | LncEditing_331746 | READ | chr17_50761275_- | 4.297904e+00 | 2.998428e+00 | 1.925199e+00 | 3.935270e+00 | 8.310314e-05 | 1.252482e-04 | UP | | ENSG00000167117 | LncEditing_331748 | READ | chr17_50761280_- | 4.102821e+00 | 1.726270e+00 | 8.006675e-01 | 7.629620e+00 | 2.354462e-14 | 4.499638e-13 | UP | | ENSG00000167117 | LncEditing_331752 | READ | chr17_50761290_- | 5.030793e+00 | 3.009725e+00 | 1.349246e+00 | 4.472497e+00 | 7.731146e-06 | 1.399744e-05 | UP | | ENSG00000167117 | LncEditing_331758 | READ | chr17_50761303_- | 4.430782e+00 | 2.586633e+00 | 1.287853e+00 | 5.609694e+00 | 2.026844e-08 | 6.577682e-08 | UP | | ENSG00000167117 | LncEditing_331702 | STAD | chr17_50761210_- | 2.837321e+00 | 1.915303e+00 | 1.763804e+00 | 4.025702e+00 | 5.680549e-05 | 6.528528e-05 | UP | | ENSG00000167117 | LncEditing_331704 | STAD | chr17_50761211_- | 3.375101e+00 | 1.541930e+00 | 8.848043e-01 | 8.450797e+00 | 2.893218e-17 | 9.065837e-17 | UP | | ENSG00000167117 | LncEditing_331706 | STAD | chr17_50761212_- | 3.004776e+00 | 1.911119e+00 | 1.531770e+00 | 3.931249e+00 | 8.450567e-05 | 9.634723e-05 | UP | | ENSG00000167117 | LncEditing_331746 | STAD | chr17_50761275_- | 3.162911e+00 | 1.463107e+00 | 8.991047e-01 | 8.896413e+00 | 5.768059e-19 | 2.238444e-18 | UP | | ENSG00000167117 | LncEditing_331756 | STAD | chr17_50761299_- | 2.982347e+00 | 1.802091e+00 | 1.375939e+00 | 5.293200e+00 | 1.201945e-07 | 1.586346e-07 | UP | | ENSG00000167117 | LncEditing_331766 | STAD | chr17_50761320_- | 2.601850e+00 | 1.942233e+00 | 2.370672e+00 | 3.888289e+00 | 1.009536e-04 | 1.143740e-04 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000167117 | LncEditing_331746 | -4.048776e-01 | 5.801406e-03 | 9.427285e-03 | | ENSG00000167117 | LncEditing_331676 | -3.191255e-01 | 2.862782e-04 | 8.117261e-04 | | ENSG00000167117 | LncEditing_331702 | -4.100227e-01 | 7.757897e-03 | 9.642738e-03 | | ENSG00000167117 | LncEditing_331704 | -3.979014e-01 | 5.435956e-05 | 2.665129e-04 | | ENSG00000167117 | LncEditing_331706 | -4.319940e-01 | 8.513444e-03 | 1.032730e-02 | | ENSG00000167117 | LncEditing_331712 | -3.323917e-01 | 1.864051e-05 | 1.400021e-04 | | ENSG00000167117 | LncEditing_331746 | -3.652118e-01 | 3.531437e-05 | 2.077662e-04 | | ENSG00000167117 | LncEditing_331756 | -3.763364e-01 | 1.561702e-03 | 2.798380e-03 | | ENSG00000167117 | LncEditing_331766 | -3.968136e-01 | 9.272822e-03 | 1.109595e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000167117 | ENSG00000120756 | PLS1 | COAD,COAD,READ,READ,STAD,STAD | | COAD,COAD |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000167117.7 | ENST00000300458.1 | 158 | 4 | 480 | | ENSG00000167117.7 | ENST00000450727.4 | 170 | 83 | 595 | | ENSG00000167117.7 | ENST00000502517.4 | 114 | 152 | 496 | | ENSG00000167117.7 | ENST00000419688.1 | 101 | 303 | 1 | | ENSG00000167117.7 | ENST00000576150.1 | 106 | 319 | 2 |
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