|
||||||
|
lncRNA: ENSG00000163364 |
Summary for LINC01116 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000163364 | Gene symbol | LINC01116 |
| Gene name | long intergenic non-protein coding RNA 1116 | |
| HGNC | 49259 | |
| Entrez ID | ||
| Gene type | lincRNA | |
| Synonyms | LINC01116|02q31.1 | |
| UniProtAcc |
Top |
Structure and expression level for LINC01116 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
 |
| Differentially expressed gene analysis between cancer and normal samples. |
 |
| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000163364 | 3.467753e+02 | 3.156252e+00 | 7.798563e-01 | 4.047222e+00 | 5.180000e-05 | 2.776150e-04 | UP | GBM |
| ENSG00000163364 | 6.157753e+01 | 4.314783e+00 | 7.680867e-01 | 5.617572e+00 | 1.940000e-08 | 1.740000e-07 | UP | CHOL |
| ENSG00000163364 | 6.527221e+02 | -1.060191e+00 | 3.645068e-01 | -2.908562e+00 | 3.630947e-03 | 7.907990e-03 | DOWN | KICH |
| ENSG00000163364 | 2.435326e+02 | 2.161954e+00 | 2.220108e-01 | 9.738059e+00 | 2.070000e-22 | 5.480000e-21 | UP | HNSC |
| ENSG00000163364 | 3.620115e+02 | -1.219453e+00 | 3.338428e-01 | -3.652775e+00 | 2.594210e-04 | 7.400210e-04 | DOWN | KIRP |
| ENSG00000163364 | 1.718632e+02 | 1.758306e+00 | 5.197859e-01 | 3.382751e+00 | 7.176370e-04 | 6.078378e-03 | UP | ESCA |
| ENSG00000163364 | 2.129801e+02 | 2.824571e+00 | 2.374445e-01 | 1.189571e+01 | 1.250000e-32 | 1.510000e-31 | UP | LUSC |
| ENSG00000163364 | 7.224755e+02 | 1.333355e+00 | 1.329773e-01 | 1.002694e+01 | 1.160000e-23 | 8.930000e-23 | UP | BRCA |
| ENSG00000163364 | 1.016000e+02 | 1.945149e+00 | 2.647473e-01 | 7.347190e+00 | 2.020000e-13 | 1.260000e-12 | UP | LUAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000163364 | 5.207862e-01 | 2.448380e-04 | CHOL | 5.783953e-04 |
| ENSG00000163364 | -5.870666e-01 | 1.479362e-09 | KICH | 1.124874e-08 |
Top |
lncRNA-Protein interaction for LINC01116 |
 |
| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
Top |
|
