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lncRNA: ENSG00000153363

Summary for LINC00467

Gene summary

Gene information	Ensembl ID	ENSG00000153363
	Gene symbol	LINC00467
	Gene name	long intergenic non-protein coding RNA 467
	HGNC	28227
	Entrez ID	84791
	Gene type	lincRNA
	Synonyms	01q32.3\|LINC00467
	UniProtAcc

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Structure and expression level for LINC00467

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000153363	3.716922e+02	1.059964e+00	3.430136e-01	3.090150e+00	2.000554e-03	6.921640e-03	UP	GBM
ENSG00000153363	5.251819e+02	2.130875e+00	5.323863e-01	4.002497e+00	6.270000e-05	8.328320e-04	UP	CESC
ENSG00000153363	3.537277e+02	1.217918e+00	1.412148e-01	8.624574e+00	6.430000e-18	8.840000e-17	UP	UCEC
ENSG00000153363	6.446015e+02	1.011451e+00	1.041413e-01	9.712291e+00	2.670000e-22	3.210000e-21	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000153363	-5.614509e-01	1.041988e-08	KICH	5.752345e-08

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lncRNA-Protein interaction for LINC00467

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000102878	HSF4	20.81	96.0033	Q9ULV5	TF	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000166526	ZNF3	19.73	96.0528	P17036	TF	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000154957	ZNF18	17.38	96.0612	P17022	TF	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000196378	ZNF34	11.06	97.2169	Q8IZ26	TF	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000085274	MYNN	11.05	96.4047	Q9NPC7	TF	NA
ENSG00000153363	ENST00000534914	LINC00467	ENSG00000166526	ZNF3	13.56	93.7427	P17036	TF	NA
ENSG00000153363	ENST00000534914	LINC00467	ENSG00000196378	ZNF34	5.27	93.9997	Q8IZ26	TF	NA
ENSG00000153363	ENST00000534914	LINC00467	ENSG00000154957	ZNF18	3.8	93.4265	P17022	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000153363	ENST00000534914	LINC00467	ENSG00000265241	RBM8A	26.56	92.3404	Q9Y5S9	RBP	NA
ENSG00000153363	ENST00000534914	LINC00467	ENSG00000173914	RBM4B	18.55	90.4798	Q9BQ04	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000139746	RBM26	106.53	95.5072	Q5T8P6	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000119203	CPSF3	85.02	92.2737	Q9UKF6	RBP	PAR-CLIP
ENSG00000153363	ENST00000448567	LINC00467	ENSG00000139746	RBM26	67.96	92.6204	Q5T8P6	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000140319	SRP14	54.69	95.3554	P37108	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000265241	RBM8A	48.63	95.1901	Q9Y5S9	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000084072	PPIE	44.48	95.0685	Q9UNP9	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000173914	RBM4B	36.39	95.6951	Q9BQ04	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000164548	TRA2A	32.18	95.0585	Q13595	RBP	ENCODE
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000139168	ZCRB1	10.57	90.1087	Q8TBF4	RBP	NA
ENSG00000153363	ENST00000423222	LINC00467	ENSG00000101138	CSTF1	6.47	95.3153	Q05048	RBP	NA

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lncRNA-DNA interaction for LINC00467

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

DDX59,LSM5,PNO1,CPSF3,THYN1,RBM48,HSF4,THAP1,ILF2,DDX56,PUF60,CSTF1,LSM4,RBM4B,TRUB2,CSTF3,TIGD1,RBM26,ERAL1,TRA2A,RBM8A,SMYD3,THAP3,UNC50,ASCC1,XPA,MYNN,THOC7,PPIE,SF3B6,USF1,ZNF3,ZNF34,THAP6,LSM3,ZNF18,E2F5,EIF2D

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

E2F5,HSF4,THAP6,ZNF18,ATF1,TERF1,MYNN,ZNF3,SRP14,USF1,EIF2D,SMYD3,ASCC1,TRA2A,THAP3

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC00467

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MAZ,ZNF71

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000153363	ENST00000610948	exon_skip_423795	chr4:55888887-55888932	-7.18	-0.3779	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000153363	ENST00000610948	exon_skip_13601	chr1:164820071-164820184	-12.26	-0.1635	PBX1	ENST00000420696	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000153363	ENST00000610948	exon_skip_84898	chr12:62566013-62566031	-5.74	-0.4783	MON2	ENST00000393630	In-frame
ENSG00000153363	ENST00000610948	exon_skip_150854	chr17:32366664-32366757	-8.30	-0.1051	ZNF207	ENST00000321233	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for LINC00467

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_22335	ENSG00000153363.11	chr1	211432879	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22336	ENSG00000153363.11	chr1	211432896	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22378	ENSG00000153363.11	chr1	211433730	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22379	ENSG00000153363.11	chr1	211433738	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22383	ENSG00000153363.11	chr1	211433784	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22394	ENSG00000153363.11	chr1	211433975	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22403	ENSG00000153363.11	chr1	211434043	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22408	ENSG00000153363.11	chr1	211434323	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22409	ENSG00000153363.11	chr1	211434331	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22410	ENSG00000153363.11	chr1	211434334	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22416	ENSG00000153363.11	chr1	211434373	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22417	ENSG00000153363.11	chr1	211434374	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22419	ENSG00000153363.11	chr1	211434385	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22422	ENSG00000153363.11	chr1	211434399	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22425	ENSG00000153363.11	chr1	211434412	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22438	ENSG00000153363.11	chr1	211434509	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22442	ENSG00000153363.11	chr1	211434535	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22443	ENSG00000153363.11	chr1	211434536	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22447	ENSG00000153363.11	chr1	211434549	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22453	ENSG00000153363.11	chr1	211434710	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22454	ENSG00000153363.11	chr1	211434711	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22463	ENSG00000153363.11	chr1	211434773	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22465	ENSG00000153363.11	chr1	211434788	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001
LncEditing_22485	ENSG00000153363.11	chr1	211434828	+	lincRNA	LINC00467	ENST00000423222.4	lincRNA	LINC00467-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000153363	LncEditing_22417	KIRC	chr1_211434374_+	2.181483e+00	1.476225e+00	1.774949e+00	7.078146e+00	1.460954e-12	2.444794e-12	UP
ENSG00000153363	LncEditing_22336	GBM	chr1_211432896_+	3.124231e+00	1.845678e+00	1.316916e+00	5.008739e+00	5.478790e-07	1.110863e-06	UP
ENSG00000153363	LncEditing_22394	GBM	chr1_211433975_+	3.459237e+00	1.752002e+00	1.018901e+00	6.464989e+00	1.013064e-10	4.553160e-10	UP
ENSG00000153363	LncEditing_22403	GBM	chr1_211434043_+	3.156144e+00	1.670502e+00	1.089466e+00	6.830870e+00	8.440139e-12	4.774876e-11	UP
ENSG00000153363	LncEditing_22408	GBM	chr1_211434323_+	3.240598e+00	1.737779e+00	1.112328e+00	6.414226e+00	1.415402e-10	6.136609e-10	UP
ENSG00000153363	LncEditing_22410	GBM	chr1_211434334_+	3.175071e+00	1.553614e+00	9.697805e-01	8.357552e+00	6.403321e-17	1.726762e-15	UP
ENSG00000153363	LncEditing_22416	GBM	chr1_211434373_+	3.134929e+00	1.750626e+00	1.189681e+00	5.938724e+00	2.872489e-09	9.007146e-09	UP
ENSG00000153363	LncEditing_22417	GBM	chr1_211434374_+	2.883322e+00	1.468920e+00	1.027775e+00	8.309972e+00	9.572487e-17	2.346710e-15	UP
ENSG00000153363	LncEditing_22419	GBM	chr1_211434385_+	2.979801e+00	1.776756e+00	1.340537e+00	5.196377e+00	2.032099e-07	4.419268e-07	UP
ENSG00000153363	LncEditing_22422	GBM	chr1_211434399_+	2.912636e+00	1.816449e+00	1.467987e+00	5.182917e+00	2.184420e-07	4.725122e-07	UP
ENSG00000153363	LncEditing_22425	GBM	chr1_211434412_+	2.955600e+00	1.790910e+00	1.383589e+00	5.179120e+00	2.229353e-07	4.809457e-07	UP
ENSG00000153363	LncEditing_22443	GBM	chr1_211434536_+	2.742163e+00	1.916624e+00	1.935183e+00	3.536722e+00	4.051261e-04	5.269244e-04	UP
ENSG00000153363	LncEditing_22447	GBM	chr1_211434549_+	2.840820e+00	1.859366e+00	1.635332e+00	4.268664e+00	1.966474e-05	3.113264e-05	UP
ENSG00000153363	LncEditing_22465	GBM	chr1_211434788_+	3.143906e+00	1.685187e+00	1.111545e+00	6.831663e+00	8.393606e-12	4.774876e-11	UP
ENSG00000153363	LncEditing_22485	GBM	chr1_211434828_+	3.203900e+00	1.861583e+00	1.276651e+00	4.927968e+00	8.308907e-07	1.608111e-06	UP
ENSG00000153363	LncEditing_22394	LGG	chr1_211433975_+	2.313000e+00	1.423276e+00	1.427450e+00	8.026674e+00	1.001504e-15	2.168900e-15	UP
ENSG00000153363	LncEditing_22403	LGG	chr1_211434043_+	2.231148e+00	1.398611e+00	1.484137e+00	8.682553e+00	3.869833e-18	1.030982e-17	UP
ENSG00000153363	LncEditing_22410	LGG	chr1_211434334_+	2.236076e+00	1.335067e+00	1.343983e+00	1.135094e+01	7.336891e-30	4.211256e-29	UP
ENSG00000153363	LncEditing_22417	LGG	chr1_211434374_+	2.233826e+00	1.346378e+00	1.369050e+00	1.160728e+01	3.784801e-31	2.544828e-30	UP
ENSG00000153363	LncEditing_22403	ACC	chr1_211434043_+	3.305333e+00	2.204372e+00	1.711074e+00	2.771909e+00	5.572865e-03	7.241896e-03	UP
ENSG00000153363	LncEditing_22408	ACC	chr1_211434323_+	3.332667e+00	2.216585e+00	1.699702e+00	2.839182e+00	4.522940e-03	6.191833e-03	UP
ENSG00000153363	LncEditing_22409	ACC	chr1_211434331_+	3.636603e+00	2.218038e+00	1.401921e+00	3.070792e+00	2.134920e-03	3.272692e-03	UP
ENSG00000153363	LncEditing_22410	ACC	chr1_211434334_+	3.226243e+00	2.169906e+00	1.747572e+00	3.556758e+00	3.754603e-04	8.102174e-04	UP
ENSG00000153363	LncEditing_22417	ACC	chr1_211434374_+	2.983887e+00	2.193698e+00	2.253125e+00	2.712500e+00	6.677778e-03	8.379957e-03	UP
ENSG00000153363	LncEditing_22485	ACC	chr1_211434828_+	3.235315e+00	2.243274e+00	1.892863e+00	1.998833e+00	4.562639e-02	4.598566e-02	UP
ENSG00000153363	LncEditing_22403	KICH	chr1_211434043_+	2.600038e+00	1.247477e+00	9.438242e-01	3.520417e+00	4.308694e-04	1.006164e-03	UP
ENSG00000153363	LncEditing_22410	KICH	chr1_211434334_+	2.226691e+00	1.278590e+00	1.249457e+00	2.781868e+00	5.404707e-03	8.070671e-03	UP
ENSG00000153363	LncEditing_22417	KICH	chr1_211434374_+	2.097347e+00	1.275674e+00	1.394105e+00	2.900861e+00	3.721383e-03	6.205838e-03	UP
ENSG00000153363	LncEditing_22403	SKCM	chr1_211434043_+	3.981884e+00	2.184520e+00	1.154555e+00	7.361340e+00	1.820737e-13	2.551552e-13	UP
ENSG00000153363	LncEditing_22410	SKCM	chr1_211434334_+	4.462707e+00	2.165838e+00	9.587787e-01	8.486398e+00	2.131415e-17	3.552358e-17	UP
ENSG00000153363	LncEditing_22417	SKCM	chr1_211434374_+	4.600484e+00	2.114039e+00	8.914374e-01	9.546180e+00	1.345670e-21	2.883579e-21	UP
ENSG00000153363	LncEditing_22394	KIRP	chr1_211433975_+	4.057048e+00	2.814468e+00	1.895490e+00	5.955828e+00	2.587579e-09	5.209969e-09	UP
ENSG00000153363	LncEditing_22403	KIRP	chr1_211434043_+	4.019311e+00	2.805911e+00	1.928719e+00	5.977014e+00	2.272641e-09	4.596468e-09	UP
ENSG00000153363	LncEditing_22408	KIRP	chr1_211434323_+	4.138003e+00	2.801463e+00	1.776975e+00	6.341062e+00	2.281874e-10	5.122807e-10	UP
ENSG00000153363	LncEditing_22410	KIRP	chr1_211434334_+	3.960483e+00	2.626383e+00	1.687481e+00	8.568769e+00	1.045971e-17	5.928160e-17	UP
ENSG00000153363	LncEditing_22416	KIRP	chr1_211434373_+	3.791747e+00	2.841827e+00	2.403592e+00	5.319271e+00	1.041841e-07	1.745473e-07	UP
ENSG00000153363	LncEditing_22417	KIRP	chr1_211434374_+	3.909893e+00	2.541306e+00	1.608857e+00	9.371004e+00	7.184563e-21	7.331520e-20	UP
ENSG00000153363	LncEditing_22485	KIRP	chr1_211434828_+	4.007824e+00	2.863729e+00	2.062178e+00	4.976778e+00	6.465150e-07	9.975438e-07	UP
ENSG00000153363	LncEditing_22335	THCA	chr1_211432879_+	3.249569e+00	2.318481e+00	2.053100e+00	5.478592e+00	4.287228e-08	6.911599e-08	UP
ENSG00000153363	LncEditing_22336	THCA	chr1_211432896_+	3.170593e+00	2.300138e+00	2.159677e+00	5.518227e+00	3.424372e-08	5.564605e-08	UP
ENSG00000153363	LncEditing_22378	THCA	chr1_211433730_+	3.501438e+00	2.220787e+00	1.522356e+00	8.954028e+00	3.427428e-19	1.246523e-18	UP
ENSG00000153363	LncEditing_22394	THCA	chr1_211433975_+	3.433241e+00	2.146628e+00	1.476017e+00	1.028167e+01	8.523992e-25	4.913358e-24	UP
ENSG00000153363	LncEditing_22403	THCA	chr1_211434043_+	3.151154e+00	2.121156e+00	1.751224e+00	9.575911e+00	1.009628e-21	4.406304e-21	UP
ENSG00000153363	LncEditing_22408	THCA	chr1_211434323_+	3.279033e+00	2.152047e+00	1.645926e+00	1.006873e+01	7.595596e-24	4.143669e-23	UP
ENSG00000153363	LncEditing_22409	THCA	chr1_211434331_+	3.319483e+00	2.282181e+00	1.849984e+00	6.961530e+00	3.365963e-12	7.067366e-12	UP
ENSG00000153363	LncEditing_22410	THCA	chr1_211434334_+	3.256685e+00	2.051728e+00	1.500230e+00	1.188184e+01	1.470987e-32	1.497955e-31	UP
ENSG00000153363	LncEditing_22416	THCA	chr1_211434373_+	3.224551e+00	2.188749e+00	1.788935e+00	8.854763e+00	8.386206e-19	2.911348e-18	UP
ENSG00000153363	LncEditing_22417	THCA	chr1_211434374_+	3.144245e+00	1.945033e+00	1.443171e+00	1.317355e+01	1.246007e-39	3.045241e-38	UP
ENSG00000153363	LncEditing_22419	THCA	chr1_211434385_+	3.597309e+00	2.268727e+00	1.503679e+00	7.852950e+00	4.063633e-15	1.034533e-14	UP
ENSG00000153363	LncEditing_22443	THCA	chr1_211434536_+	2.968936e+00	2.326161e+00	2.840953e+00	4.880743e+00	1.056871e-06	1.574996e-06	UP
ENSG00000153363	LncEditing_22447	THCA	chr1_211434549_+	3.051863e+00	2.314659e+00	2.506955e+00	5.565355e+00	2.616193e-08	4.343734e-08	UP
ENSG00000153363	LncEditing_22454	THCA	chr1_211434711_+	2.944451e+00	2.319775e+00	2.906862e+00	5.081372e+00	3.747189e-07	5.738176e-07	UP
ENSG00000153363	LncEditing_22465	THCA	chr1_211434788_+	3.418789e+00	2.229168e+00	1.620798e+00	8.792949e+00	1.456841e-18	4.890825e-18	UP
ENSG00000153363	LncEditing_22485	THCA	chr1_211434828_+	3.200681e+00	2.216995e+00	1.887600e+00	8.515610e+00	1.657152e-17	5.062599e-17	UP
ENSG00000153363	LncEditing_22394	THYM	chr1_211433975_+	3.706855e+00	2.494344e+00	1.749674e+00	2.721794e+00	6.492858e-03	7.872772e-03	UP
ENSG00000153363	LncEditing_22403	THYM	chr1_211434043_+	3.615682e+00	2.427273e+00	1.739338e+00	3.924512e+00	8.690557e-05	1.554548e-04	UP
ENSG00000153363	LncEditing_22408	THYM	chr1_211434323_+	3.665854e+00	2.335044e+00	1.536807e+00	4.980740e+00	6.334163e-07	1.907287e-06	UP
ENSG00000153363	LncEditing_22409	THYM	chr1_211434331_+	3.550893e+00	2.393934e+00	1.758091e+00	4.187946e+00	2.814902e-05	5.410201e-05	UP
ENSG00000153363	LncEditing_22410	THYM	chr1_211434334_+	3.602962e+00	2.311385e+00	1.561460e+00	4.724563e+00	2.306104e-06	5.786613e-06	UP
ENSG00000153363	LncEditing_22416	THYM	chr1_211434373_+	3.513001e+00	2.460021e+00	1.945399e+00	3.986853e+00	6.695537e-05	1.217779e-04	UP
ENSG00000153363	LncEditing_22417	THYM	chr1_211434374_+	3.656347e+00	2.245844e+00	1.422182e+00	5.104959e+00	3.308663e-07	1.073830e-06	UP
ENSG00000153363	LncEditing_22419	THYM	chr1_211434385_+	3.979308e+00	2.472369e+00	1.456402e+00	3.705652e+00	2.108475e-04	3.421538e-04	UP
ENSG00000153363	LncEditing_22438	THYM	chr1_211434509_+	3.818572e+00	2.466572e+00	1.585979e+00	3.482787e+00	4.962224e-04	7.450208e-04	UP
ENSG00000153363	LncEditing_22442	THYM	chr1_211434535_+	3.799434e+00	2.443252e+00	1.569904e+00	3.235080e+00	1.216086e-03	1.677146e-03	UP
ENSG00000153363	LncEditing_22443	THYM	chr1_211434536_+	4.005606e+00	2.291237e+00	1.240858e+00	4.887524e+00	1.021118e-06	2.912875e-06	UP
ENSG00000153363	LncEditing_22447	THYM	chr1_211434549_+	3.988508e+00	2.442062e+00	1.412930e+00	4.267415e+00	1.977508e-05	3.955016e-05	UP
ENSG00000153363	LncEditing_22453	THYM	chr1_211434710_+	3.433446e+00	2.539314e+00	2.297698e+00	3.220084e+00	1.281531e-03	1.749596e-03	UP
ENSG00000153363	LncEditing_22454	THYM	chr1_211434711_+	3.426960e+00	2.405154e+00	1.957713e+00	4.029006e+00	5.601315e-05	1.036148e-04	UP
ENSG00000153363	LncEditing_22463	THYM	chr1_211434773_+	3.549513e+00	2.463613e+00	1.898091e+00	3.845024e+00	1.205406e-04	2.054497e-04	UP
ENSG00000153363	LncEditing_22465	THYM	chr1_211434788_+	4.011110e+00	2.453777e+00	1.410442e+00	4.371366e+00	1.234714e-05	2.583094e-05	UP
ENSG00000153363	LncEditing_22485	THYM	chr1_211434828_+	3.354002e+00	2.216347e+00	1.673081e+00	5.102967e+00	3.343692e-07	1.078739e-06	UP
ENSG00000153363	LncEditing_22335	OV	chr1_211432879_+	3.706639e+00	1.998485e+00	1.122077e+00	7.304149e+00	2.790264e-13	6.511797e-13	UP
ENSG00000153363	LncEditing_22336	OV	chr1_211432896_+	3.745681e+00	2.028988e+00	1.130624e+00	7.310000e+00	2.671418e-13	6.274249e-13	UP
ENSG00000153363	LncEditing_22378	OV	chr1_211433730_+	3.263346e+00	1.781818e+00	1.145473e+00	9.300899e+00	1.392634e-20	6.652090e-20	UP
ENSG00000153363	LncEditing_22379	OV	chr1_211433738_+	3.806781e+00	2.025106e+00	1.098208e+00	7.340051e+00	2.135128e-13	5.059924e-13	UP
ENSG00000153363	LncEditing_22383	OV	chr1_211433784_+	3.587012e+00	1.964114e+00	1.150875e+00	7.827672e+00	4.969856e-15	1.391106e-14	UP
ENSG00000153363	LncEditing_22408	OV	chr1_211434323_+	3.859566e+00	1.929235e+00	9.995906e-01	8.876841e+00	6.878579e-19	2.811046e-18	UP
ENSG00000153363	LncEditing_22409	OV	chr1_211434331_+	3.916674e+00	2.025979e+00	1.051514e+00	7.046720e+00	1.831842e-12	3.972591e-12	UP
ENSG00000153363	LncEditing_22410	OV	chr1_211434334_+	3.778519e+00	1.860225e+00	9.781447e-01	9.376743e+00	6.804213e-21	3.336786e-20	UP
ENSG00000153363	LncEditing_22416	OV	chr1_211434373_+	3.781139e+00	1.927511e+00	1.028720e+00	8.811875e+00	1.230695e-18	4.941588e-18	UP
ENSG00000153363	LncEditing_22417	OV	chr1_211434374_+	3.736429e+00	1.813480e+00	9.588654e-01	9.930095e+00	3.079616e-23	1.838771e-22	UP
ENSG00000153363	LncEditing_22419	OV	chr1_211434385_+	4.209219e+00	1.951443e+00	9.017042e-01	8.470530e+00	2.442787e-17	8.381131e-17	UP
ENSG00000153363	LncEditing_22422	OV	chr1_211434399_+	4.198472e+00	1.980254e+00	9.223567e-01	8.543310e+00	1.304313e-17	4.630564e-17	UP
ENSG00000153363	LncEditing_22425	OV	chr1_211434412_+	4.169947e+00	1.950782e+00	9.124283e-01	8.615426e+00	6.968209e-18	2.573200e-17	UP
ENSG00000153363	LncEditing_22447	OV	chr1_211434549_+	4.234179e+00	2.028493e+00	9.419089e-01	7.510933e+00	5.870735e-14	1.468882e-13	UP
ENSG00000153363	LncEditing_22454	OV	chr1_211434711_+	3.881878e+00	2.013921e+00	1.056248e+00	7.002303e+00	2.517882e-12	5.371676e-12	UP
ENSG00000153363	LncEditing_22463	OV	chr1_211434773_+	4.157205e+00	1.952814e+00	9.173815e-01	8.506093e+00	1.798926e-17	6.289400e-17	UP
ENSG00000153363	LncEditing_22465	OV	chr1_211434788_+	3.798046e+00	1.861603e+00	9.720898e-01	9.273891e+00	1.794769e-20	8.528630e-20	UP
ENSG00000153363	LncEditing_22485	OV	chr1_211434828_+	4.535531e+00	2.008732e+00	8.510736e-01	7.547625e+00	4.432680e-14	1.122824e-13	UP
ENSG00000153363	LncEditing_22394	TGCT	chr1_211433975_+	1.007233e+01	5.038103e+00	1.000555e+00	4.501210e+00	6.756755e-06	1.062890e-05	UP
ENSG00000153363	LncEditing_22403	TGCT	chr1_211434043_+	8.629740e+00	5.090036e+00	1.312954e+00	3.929154e+00	8.524527e-05	1.202252e-04	UP
ENSG00000153363	LncEditing_22408	TGCT	chr1_211434323_+	9.007009e+00	4.939838e+00	1.153956e+00	4.812091e+00	1.493591e-06	2.503601e-06	UP
ENSG00000153363	LncEditing_22409	TGCT	chr1_211434331_+	8.233546e+00	5.483645e+00	1.705382e+00	3.050856e+00	2.281903e-03	2.643904e-03	UP
ENSG00000153363	LncEditing_22416	TGCT	chr1_211434373_+	9.526290e+00	5.255245e+00	1.165289e+00	3.661078e+00	2.511566e-04	3.346028e-04	UP
ENSG00000153363	LncEditing_22419	TGCT	chr1_211434385_+	9.771829e+00	5.255942e+00	1.117719e+00	3.847483e+00	1.193374e-04	1.648953e-04	UP
ENSG00000153363	LncEditing_22443	TGCT	chr1_211434536_+	8.288272e+00	5.192386e+00	1.482198e+00	3.980742e+00	6.870040e-05	9.756411e-05	UP
ENSG00000153363	LncEditing_22465	TGCT	chr1_211434788_+	1.073439e+01	5.217598e+00	9.608160e-01	3.477675e+00	5.057831e-04	6.365085e-04	UP
ENSG00000153363	LncEditing_22485	TGCT	chr1_211434828_+	8.115366e+00	5.359396e+00	1.670604e+00	3.645777e+00	2.665853e-04	3.539627e-04	UP
ENSG00000153363	LncEditing_22403	LUAD	chr1_211434043_+	5.282013e+00	3.068539e+00	1.276266e+00	8.714216e+00	2.927768e-18	7.202973e-18	UP
ENSG00000153363	LncEditing_22410	LUAD	chr1_211434334_+	5.679276e+00	3.047717e+00	1.113613e+00	9.253846e+00	2.165569e-20	6.794864e-20	UP
ENSG00000153363	LncEditing_22417	LUAD	chr1_211434374_+	5.498492e+00	2.942865e+00	1.108875e+00	1.064637e+01	1.812979e-26	1.032921e-25	UP
ENSG00000153363	LncEditing_22443	LUAD	chr1_211434536_+	5.238077e+00	3.144493e+00	1.358308e+00	7.055444e+00	1.720506e-12	2.759181e-12	UP
ENSG00000153363	LncEditing_22378	STAD	chr1_211433730_+	3.245766e+00	1.780216e+00	1.154059e+00	8.783129e+00	1.589881e-18	5.867809e-18	UP
ENSG00000153363	LncEditing_22417	CESC	chr1_211434374_+	4.217202e+00	2.050099e+00	9.609906e-01	6.859317e+00	6.919074e-12	1.978726e-11	UP
ENSG00000153363	LncEditing_22403	PRAD	chr1_211434043_+	2.866511e+00	2.232060e+00	2.770697e+00	5.350170e+00	8.787157e-08	1.335015e-07	UP
ENSG00000153363	LncEditing_22408	PRAD	chr1_211434323_+	2.897405e+00	2.233817e+00	2.664888e+00	5.127989e+00	2.928528e-07	4.242059e-07	UP
ENSG00000153363	LncEditing_22410	PRAD	chr1_211434334_+	3.001893e+00	2.161394e+00	2.110102e+00	8.371624e+00	5.682938e-17	1.722367e-16	UP
ENSG00000153363	LncEditing_22416	PRAD	chr1_211434373_+	2.862949e+00	2.238261e+00	2.815920e+00	5.350521e+00	8.770128e-08	1.335015e-07	UP
ENSG00000153363	LncEditing_22417	PRAD	chr1_211434374_+	2.873278e+00	2.150228e+00	2.391156e+00	8.483747e+00	2.180553e-17	6.854823e-17	UP
ENSG00000153363	LncEditing_22485	PRAD	chr1_211434828_+	2.942399e+00	2.234422e+00	2.518314e+00	5.425070e+00	5.793199e-08	8.986300e-08	UP
ENSG00000153363	LncEditing_22335	BRCA	chr1_211432879_+	4.790744e+00	2.956376e+00	1.435915e+00	1.117017e+01	5.707266e-29	1.034709e-28	UP
ENSG00000153363	LncEditing_22336	BRCA	chr1_211432896_+	4.727257e+00	2.989785e+00	1.512948e+00	1.003820e+01	1.035415e-23	1.564963e-23	UP
ENSG00000153363	LncEditing_22378	BRCA	chr1_211433730_+	4.992326e+00	2.916599e+00	1.289615e+00	1.269569e+01	6.247357e-37	1.524104e-36	UP
ENSG00000153363	LncEditing_22394	BRCA	chr1_211433975_+	4.862928e+00	2.879710e+00	1.322924e+00	1.361230e+01	3.384416e-42	9.841881e-42	UP
ENSG00000153363	LncEditing_22403	BRCA	chr1_211434043_+	4.587174e+00	2.748415e+00	1.353169e+00	1.535100e+01	3.487745e-53	1.785627e-52	UP
ENSG00000153363	LncEditing_22408	BRCA	chr1_211434323_+	4.800507e+00	2.865963e+00	1.343785e+00	1.305666e+01	5.823062e-39	1.501194e-38	UP
ENSG00000153363	LncEditing_22410	BRCA	chr1_211434334_+	4.688054e+00	2.715789e+00	1.269651e+00	1.571368e+01	1.218861e-55	7.032635e-55	UP
ENSG00000153363	LncEditing_22416	BRCA	chr1_211434373_+	4.692750e+00	2.809528e+00	1.351158e+00	1.411464e+01	3.085705e-45	1.094296e-44	UP
ENSG00000153363	LncEditing_22417	BRCA	chr1_211434374_+	4.467160e+00	2.681796e+00	1.358403e+00	1.573154e+01	9.194688e-56	5.347630e-55	UP
ENSG00000153363	LncEditing_22442	BRCA	chr1_211434535_+	4.875062e+00	2.956850e+00	1.386272e+00	1.143132e+01	2.916509e-30	5.478816e-30	UP
ENSG00000153363	LncEditing_22443	BRCA	chr1_211434536_+	4.755484e+00	2.880500e+00	1.382604e+00	1.329449e+01	2.491557e-40	6.784128e-40	UP
ENSG00000153363	LncEditing_22447	BRCA	chr1_211434549_+	5.037844e+00	2.921077e+00	1.271769e+00	1.267309e+01	8.336454e-37	2.013489e-36	UP
ENSG00000153363	LncEditing_22454	BRCA	chr1_211434711_+	4.682701e+00	2.882414e+00	1.428442e+00	1.256016e+01	3.496097e-36	8.120328e-36	UP
ENSG00000153363	LncEditing_22485	BRCA	chr1_211434828_+	4.798824e+00	2.888823e+00	1.365749e+00	1.267167e+01	8.488372e-37	2.043393e-36	UP
ENSG00000153363	LncEditing_22336	ESCA	chr1_211432896_+	2.599144e+00	1.592797e+00	1.415481e+00	3.893796e+00	9.868753e-05	1.237136e-04	UP
ENSG00000153363	LncEditing_22378	ESCA	chr1_211433730_+	2.641745e+00	1.518057e+00	1.251149e+00	5.384219e+00	7.275995e-08	1.385149e-07	UP
ENSG00000153363	LncEditing_22383	ESCA	chr1_211433784_+	2.473049e+00	1.613509e+00	1.623140e+00	3.486198e+00	4.899389e-04	5.755057e-04	UP
ENSG00000153363	LncEditing_22408	ESCA	chr1_211434323_+	2.957287e+00	1.531137e+00	1.052996e+00	5.072638e+00	3.923390e-07	6.702059e-07	UP
ENSG00000153363	LncEditing_22409	ESCA	chr1_211434331_+	2.898125e+00	1.548436e+00	1.105818e+00	4.684553e+00	2.805710e-06	4.264516e-06	UP
ENSG00000153363	LncEditing_22410	ESCA	chr1_211434334_+	2.782249e+00	1.491195e+00	1.111380e+00	5.420722e+00	5.935882e-08	1.141432e-07	UP
ENSG00000153363	LncEditing_22416	ESCA	chr1_211434373_+	2.897059e+00	1.539139e+00	1.095932e+00	4.942503e+00	7.712579e-07	1.254321e-06	UP
ENSG00000153363	LncEditing_22417	ESCA	chr1_211434374_+	2.875694e+00	1.483567e+00	1.047296e+00	5.714174e+00	1.102382e-08	2.362568e-08	UP
ENSG00000153363	LncEditing_22425	ESCA	chr1_211434412_+	2.987390e+00	1.547279e+00	1.053571e+00	4.593313e+00	4.362632e-06	6.457681e-06	UP
ENSG00000153363	LncEditing_22465	ESCA	chr1_211434788_+	3.199051e+00	1.533947e+00	9.430441e-01	4.968253e+00	6.755891e-07	1.109745e-06	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000153363	LncEditing_22335	-3.921791e-01	2.551480e-03	4.194479e-03
ENSG00000153363	LncEditing_22336	-3.100238e-01	2.844814e-02	2.932659e-02
ENSG00000153363	LncEditing_22454	-3.854384e-01	6.238529e-03	8.356548e-03
ENSG00000153363	LncEditing_22335	-5.774806e-01	2.139137e-05	5.114259e-05
ENSG00000153363	LncEditing_22336	-4.998423e-01	4.107286e-05	8.717505e-05
ENSG00000153363	LncEditing_22403	-3.881432e-01	2.152786e-06	6.683276e-06
ENSG00000153363	LncEditing_22416	-3.672566e-01	1.077082e-04	2.018315e-04
ENSG00000153363	LncEditing_22419	-3.179897e-01	2.160166e-02	2.224330e-02
ENSG00000153363	LncEditing_22443	-4.828449e-01	7.048574e-05	1.345049e-04
ENSG00000153363	LncEditing_22447	-3.309373e-01	8.607773e-03	9.325087e-03
ENSG00000153363	LncEditing_22454	-3.778596e-01	1.369705e-03	1.705979e-03
ENSG00000153363	LncEditing_22465	-5.271511e-01	1.180222e-06	4.232370e-06
ENSG00000153363	LncEditing_22485	-4.092646e-01	3.149666e-05	7.044414e-05
ENSG00000153363	LncEditing_22394	-4.523065e-01	3.455705e-02	3.829683e-02
ENSG00000153363	LncEditing_22403	-4.631747e-01	1.139518e-02	2.174615e-02
ENSG00000153363	LncEditing_22408	-5.072117e-01	3.588183e-03	9.309880e-03
ENSG00000153363	LncEditing_22409	-5.461198e-01	3.519072e-02	3.829683e-02
ENSG00000153363	LncEditing_22416	-5.556244e-01	1.666465e-02	2.666344e-02
ENSG00000153363	LncEditing_22417	-3.310523e-01	1.764839e-02	2.777452e-02
ENSG00000153363	LncEditing_22419	-5.412599e-01	2.484440e-02	3.391757e-02
ENSG00000153363	LncEditing_22443	-5.002111e-01	6.713995e-03	1.464872e-02
ENSG00000153363	LncEditing_22465	-5.588628e-01	3.033731e-02	3.614636e-02
ENSG00000153363	LncEditing_22410	-3.014390e-01	3.948652e-02	4.629798e-02
ENSG00000153363	LncEditing_22485	-7.174895e-01	4.510055e-02	4.839988e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000153363.11	ENST00000423222.4	37	5	115
ENSG00000153363.11	ENST00000534914.4	205	890	1507
ENSG00000153363.11	ENST00000448567.2	148	58	504
ENSG00000153363.11	ENST00000610948.1	103	168	476

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential