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lncRNA: ENSG00000146521 |
Summary for LINC01558 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000146521 | Gene symbol | LINC01558 |
| Gene name | long intergenic non-protein coding RNA 1558 | |
| HGNC | 21235 | |
| Entrez ID | 26238 | |
| Gene type | lincRNA | |
| Synonyms | LINC01558|06q27 | |
| UniProtAcc | Q9Y6Z2 |
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Structure and expression level for LINC01558 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000146521 | 2.247644e+02 | -1.565007e+00 | 5.030834e-01 | -3.110830e+00 | 1.865622e-03 | 5.999537e-03 | DOWN | CHOL |
| ENSG00000146521 | 1.016313e+02 | 1.301733e+00 | 2.242698e-01 | 5.804315e+00 | 6.460000e-09 | 3.180000e-08 | UP | COAD |
| ENSG00000146521 | 1.482246e+02 | 1.488433e+00 | 4.329931e-01 | 3.437545e+00 | 5.870130e-04 | 3.552109e-03 | UP | READ |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for LINC01558 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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