 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,ARHGEF1,PMM2,VAMP1,TINF2,MTMR6,ATL2,MFSD8,MCRS1,ABHD17A,DNAJC27,MAST3,CIRBP,LIG3,RNF166,MZF1,MAPK8IP3,SRP19,RHNO1,VAMP4,FKRP,TRUB2,SLF2,NUP62,TMEM184C,HLTF,UTP18,PIGG,SENP1,TIMM17B,GPATCH11,SLC25A12,SLC19A2,WDR5B,ST7L,DTYMK,MSANTD2,FAM200A,CHKA,COG6,TRIM5,SF3A3,C9orf85,FAM133B,UBE2N,VRK3,TBK1,TTC14,BRPF1,KNSTRN,RAB10,SH3GLB1,PPIP5K2,STX18,DNTTIP2,SRSF4,SPTY2D1,ECHDC2,TAF9,SCML1,SDF2,C20orf194,CBX3,ZIK1,COX19,NCBP1,PPIL4,FAM219B,MPLKIP,AP3M2,SMC2,PSIP1,RIC8B,UBE3A,MORC2,THOC2,ZBTB6,TIMMDC1,OTULIN,WDR5,GTF3C2,OFD1,PEAK1,ARHGAP11A,FCHSD1,TMEM243,MSH6,HELLS,PURA,PON2,CFAP298,MIS12,ANO8,ZNHIT6,HERPUD2,H2AZ1,APBA3,NEMP1,EML4,MIS18BP1,MDN1,ANAPC5,RNF24,SRPK1,COQ6,FKBP15,C12orf73,DONSON,MBD4,SECISBP2L,SSBP2,NFKBIZ,MCM3,PHC3,CDK11A,BTF3L4,TES,AIDA,ZZEF1,DHX35,TOE1,INTS2,SUPT20H,DCUN1D2,UBXN2A,EIF2B1,SLU7,PRELID3B,BUB3,RIOK1,SMARCAD1,GIGYF1,HMGN3,STX6,GTSE1,KHNYN,ZNF14,SSX2IP,SEC31B,CDK17,IPO9,ATG2B,CIR1,PDRG1,USP38,ARHGAP33,C9orf40,DMAC2L,ECD,AP4E1,TNPO2,DDX42,CASP6,DENR,KDM1A,EIF4A1,CSNK2A2,MKRN2,LYSMD1,FAM204A,DNAJC24,PGGT1B,IKZF3,GCA,RCHY1,SWT1,BRD3,CCNF,ARHGEF9,ZNF30,AMMECR1L,TMEM168,SLC26A11,TEDC2,FANCL,STK17B,BRAP,KLF7,CDC42SE1,JMJD6,PHKA2,C1orf159,FAM98C,WBP4,UBE2G2,PAWR,TMEM14B,MIB1,CEP68,IP6K2,NEMP2,POLR2C,PLEKHG2,KLHL15,RAP2C,VEZF1,MLLT6,PRPF40A,GSK3B,ZNF70,FASTKD1,INO80D,PIGH,ICE2,AGK,ENOPH1,CRLF3,C20orf96,DDX24,PHF7,KPNA1,STK3,MAPK9,CIP2A,GID8,AP1G2,BANP,KIF4A,ZNF25,SCO1,TRNT1,FANCA,CHD8,ARHGAP27,KIAA1143,DENND6A,RALGPS2,UBR4,TMED8,IFT74,NBEAL2,OSBPL8,UHRF1,MZT1,CBLB,ATXN10,XPO4,AP1AR,RPA2,UFL1,PKD1,RIMKLB,FAAP24,TAF8,PIDD1,METAP1D,SLC25A46,NSD1,PSMD14,UTP14C,RFWD3,LAS1L,CEP83,DDX20,RFC4,LIN54,ISG20L2,GSKIP,LRIG2,PARP2,SRSF9,CHRNB1,IKBKB,BRF1,SLC38A1,SART3,DGKE,SRBD1,ANKRD49,CYB561D1,PAXBP1,LEMD2,CCDC125,KCTD18,RSRP1,EYA3,NXT1,RNF31,FLCN,SUMO3,NVL,ATG14,GOLGB1,PWWP2A,UCHL5,MYNN,AK6,RPE,ANKLE2,SLC39A10,MED19,HDAC2,LINS1,ZFR,SNX5,TMEM199,LDAH,SCAF11,DDX11,PUS10,TMEM167A,CNOT7,DIABLO,NDUFAF7,TOR1AIP2,TXNDC9,ZNF862,PDS5B,SBF1,EDEM3,ATP6V0A2,SNX6,UEVLD,NLRP1,CENPL,BTN2A2,KIF3A,GGT7,TYW1,GSTA4,TIMM23B,ANKMY2,CSTF2,CCNA2,PRKAG1,EXOC7,MTRF1L,KHDC4,MIDEAS,MIER2,FHOD1,UNC119B,ELL,PIK3CA,PSMD12,ATAD2B,KCNC3,NISCH,DUT,PREPL,PI4KA,ESCO1,MTMR10,RASSF1,PBX2,FGD6,MYPOP,ANGEL2,ATXN7L2,NAA15,POC5,RIT1,MYSM1,MSTO1,UIMC1,DTD2,ELF1,TJAP1,C12orf29,UVRAG,RNF44,SMARCE1,RBBP8,TAF1D,MKS1,CEP95,NUP153,TTI1,KIAA0895,DDX52,SLC11A2,USP4,IFT88,TASP1,ATF6B,COX11,CRY1,MEF2C,SUGT1,GTF3C3,AFTPH,PSMD10,XPC,MYCBP,DMPK,BARD1,RPS6KB1,DPH2,C15orf40,TXLNA,GABBR1,N6AMT1,KANSL3,DSCC1,DENND4A,INIP,CCDC32,MPHOSPH9,POM121C,HECTD1,NUP37,INTS7,SP100,LLPH,WDR62,EDC4,AGO2,ARL13B,RBM26,XRCC2,CAMK2G,SPATA6,CCNH,CEBPZOS,MLH3,KIF20A,KANSL1L,KIF21A,WDFY3,ENTPD4,SMC5,CHD4,BRCA2,HEATR5B,PFDN1,VPS53,SNW1,GOSR2,LCOR,PHF1,PABIR2,HDAC10,FBXL20,CENPC,HSF4,NOL9,HERC2,OTUD6B,TDG,WBP11,ABHD13,TUBGCP4,RUBCN,RGL3,MEGF8,C2orf49,POLK,RAD51C,WIZ,PLEKHA3,DCAF12,PSPC1,PRKAA1,ABCF2,PRDM2,WRN,RBL1,R3HDM2,VEZT,POLR1C,BAZ1B,USP12,MOB3C,APEX1,PSMG4,ZGPAT,METTL6,AAK1,PBX4,TIA1,MOSMO,BAG4,SAAL1,FCF1,SP110,INTS9,ZNF8,AMMECR1,BMPR2,SNRNP200,CDK2,SLBP,ERCC3,SAYSD1,FAM13B,DTX3,GRIPAP1,ZMYND19,RNF215,NAT9,UBA7,BRCA1,ARFGEF1,MTMR9,LUC7L,SPOPL,PCNA,PTBP3,WDR6,BRD8,ERCC8,TMCC1,UBE2V1,LRSAM1,METTL8,USP16,MAPKAPK5,IARS1,BROX,CRTC2,AMY2B,CYTH2,C8orf76,B9D2,APPL1,RBM33,NOL8,TMEM237,TIMM21,WRAP73,FPGT,DSTYK,KLHL26,MPHOSPH10,SLC25A27,SCFD1,POLR1B,EXOC5,GXYLT1,ZNF2,ICA1,POLR1F,PPP5C,POLE3,CHCHD7,KCTD6,MAP3K2,RPRD1A,GPATCH2,MUTYH,TOR1AIP1,KIF21B,NHLRC2,CAAP1,RUFY3,CKAP2,ZFYVE26,BECN1,ANKRD42,LARP7,ZC3HC1,KMT2E,CWC22,AKT2,C2orf42,DCAF16,MORC3,RALGDS,PEX1,ENAH,CHORDC1,S100PBP,TRIM3,KAT6B,FBXW8,SUPT16H,RNF216,TRIM23,DTWD1,PCNT,YEATS2,TAF1C,RBM14,RB1,TRAF3,IKZF4,TEFM,SURF6,TCEANC2,PIP4K2B,NF1,RNASEH2B,C2orf69,SPIN4,THAP9,KIF14,THAP6,DHX15,GGPS1,KIF20B,SENP7,AQR,CHFR,MTRF1,ARVCF,TAF2,SEC16A,TRIP11,TRPM7,PXK,GTF2E1,MCM8,ACLY,TRAPPC8,KCTD20,FAM216A,ERV3-1,MKLN1,STK19,WDR41,PHIP,ANO9,KLC1,FUNDC1,GPS2,DUS4L,LRRC58,PPP1R21,NOL12,RBM18,CCDC93,MBD6,SNX1,SIPA1L3,TM2D1,TCEA1,ATAD1,HP1BP3,SPATA33,ACP6,VPS13C,TAPT1,NLRC3,CBR4,WASHC5,DIDO1,FKTN,ALG9,CEP41,SLC36A4,DUSP28,TBC1D22B,PUM2,FTSJ1,MARCHF5,ANP32A,DHX36,MKRN1,VPS16,BCDIN3D,TOMM5,ZCCHC7,TTC9C,IMPA1,TTLL3,RXRB,MED10,COPS8,NUDT17,NEDD1,LRP5L,KATNIP,RCBTB2,SH3GLB2,SPG11,FBXO42,PDCD7,NCAPD3,MRPL38,ANKRD13D,INTS4,PIP5K1A,SIRT7,AAR2,STK38,ELMO2,KRCC1,MGAT4A,B3GNTL1,PUM1,NUP155,TXNL4B,CENPK,FASTKD3,ZRANB1,DYNC2LI1,PPP2CA,CMC2,CAPZA1,CNOT9,BCS1L,TANK,DMTF1,MKNK1,ZDHHC23,RFC1,FAM193A,OPA3,DCK,MAK16,LMBR1L,MORF4L2,VPS39,STAT2,ENY2,VMP1,CENATAC,SAFB2,APTX,NAPA,OSER1,AFF4,LZTFL1,ARAP2,STRBP,RNF38,CHMP5,POLR2K,LBR,PARG,KPNB1,DEK,ZBED5,PNO1,HUS1,INPP5B,SETD2,IK,SIN3A,MEX3C,CREB1,SLC2A11,SUDS3,SPG7,DPY19L4,CAPN7,ADAM10,USP49,SMAD2,PPIP5K1,CLCN6,ADD3,IGIP,OGFOD1,PDE7A,POLD1,CLK2,WDR70,MYEF2,RNF19A,FIG4,ASH1L,POLG2,PTAR1,CEP152,TRIM37,CTC1,GABPB1,NASP,ARMC10,VPS36,INTS6,ACYP1,FBXO38,TBCCD1,IFT172,HCFC2,SLC4A1AP,SKP2,RSRC2,PFDN6,SNX27,NAPB,USP46,ZWINT,C3orf62,NAA25,PNMA8A,PRMT9,GTDC1,C9orf72,ZBED8,CHD9,RALGAPA2,TOPBP1,BACH1,AGER,DNAJA2,C19orf12,DYNLT1,PRPF38A,UBE2E1,GPN3,SBNO1,C1orf52,POGLUT1,TECPR1,MRPL32,ABHD16A,TOP1,NXF1,MED8,RNF111,UQCC1,C6orf62,PAN2,C2orf76,LRTOMT,SLFN13,MKI67,MOAP1,PPIL1,STAG2,PKN2,THEM4,SNX4,CCAR2,NRDE2,METTL4,FITM2,DCLRE1A,MTMR4,KLHL17,XPO6,ATXN2L,DNASE1,SDE2,HDAC8,ANKRD13C,TTC3,ORC6,GOLGA2,EAPP,STXBP5,ATF7IP,KIF12,TMEM248,BRD4,SHOC2,METTL18,MOSPD2,ATG4C,CD2AP,RSL24D1,IQCC,CASTOR3,SKA2,RAB28,TRMO,PDCD10,COPB1,DPY19L3,SMG7,MED7,SH2B1,DCLRE1B,RANBP3,STK11,LCORL,CSNK1G1,CEP57,HOOK3,METAP1,ARIH2,SPICE1,ARMCX4,HAUS2,TRMT6,AMD1,MORF4L1,BZW1,EIF2AK3,SAMD8,SPATA5L1,TMEM18,EIF2B4,DDX55,SHQ1,GLMN,METTL21A,WDR59,UBA6,ACAP2,DNAJC8,ACBD6,TNK2,TNKS2,LANCL1,ODR4,IFT140,PPP3CB,AP5M1,BCOR,TMEM138,DENND11,LYSMD3,LTO1,TMEM251,DNAJB11,ALS2CL,NEK9,HMGB1,EP400,PRKAB1,METTL23,ANKDD1A,GLT8D1,DDX6,TRMT2B,NFKBID,C17orf75,SESTD1,LCMT2,SLX4,SP2,MECP2,NBPF11,UBAP2L,RPRD1B,DYNLT2,QRSL1,ACIN1,TNRC18,THAP1,EML2,STRAP,TTC8,DNAJC19,GOLT1B,GTF2A1,CEP85,ZNF28,INPP5E,PITPNB,BOD1L1,PHF11,RAB33B,CHD2,MINDY3,TPGS2,NBPF15,METTL14,ERN1,OTUD4,HEMK1,UPF3B,TMPO,HERC1,QKI,IFT20,HAUS1,BCL2L11,GNRH1,ZSWIM8,GDAP2,KRTCAP2,PISD,PIGK,CCDC82,POP5,SBF2,LRBA,ELP1,GDI1,KIF18B,NOM1,ANP32E,RAD51,UCKL1,FKBP3,CIAPIN1,SYNGAP1,XAF1,CHD1,NAP1L4,FANCC,FBXO30,HECTD4,GTPBP8,YY1AP1,HARS2,GNPTAB,SFT2D1,PDCD2L,EP400P1,HPS4,MCPH1,XPO5,ZBED6CL,SNRNP40,USP45,UBE3B,PANK4,CARD8,GOPC,LRRC14,EVI5,NCOA2,CENPU,LRIF1,MED17,STMN1,DNMT1,PLCG1,PSRC1,RCBTB1,NCAPG,PRKAB2,RALGAPA1,TMX3,BICRA,MDM1,CHTF18,MED13L,POLH,FBXO41,ASPM,SMG6,NEK4,CCDC174,MCM2,PIP4P1,CDK5RAP1,SPIN3,TBRG1,NPRL2,RDH13,SUV39H2,PPP1R12A,MIS18A,FBXO46,RNPC3,C14orf28,MNT,CCDC77,BTBD19,DOP1A,KIAA2026,KMT2C,CCSAP,STAU2,SIKE1,SCAF4,NOL6,YTHDF3,CCNT2,SNX14,ORC3,PI4KB,HIF1A,NRAS,CENPQ,NEK2,ZNF91,ZFP91,DNM2,TRAPPC11,ARMCX3,ATG16L1,ZBTB3,ATP13A3,TUBGCP5,RBM25,C1orf131,SPATA2,KLHL9,SMARCC1,UBR5,ELP6,PRIM1,ETNK1,SERTAD2,ERMARD,DTL,E2F6,EPC1,RNF114,ZNF22,ZC3H13,PANK3,TMEM69,ZNF717,HEATR6,HEXIM2,TGIF2,MRPS22,MAP3K7,ARGLU1,YJEFN3,NEPRO,LIG4,POLQ,TCF19,SRPK2,USP19,MEX3D,SGSM2,VMAC,ORC5,TGS1,KRI1,PPP4R1,BCL2L12,TMEM161B,KRR1,FAM149B1,LBHD1,NSMAF,ATAD2,DENND1B,ADAM17,HOOK2,PPP4R3A,RFX3,UBA3,TMEM245,CRCP,VSIG10,TMEM68,PIM2,C3orf38,DEPDC1B,USP48,FASTKD5,SRGAP2,ZCCHC10,PARP8,HELZ,ELF2,TMEM65,ZNF43,CWF19L1,COA5,ARL5B,SAR1A,EIF1B,PMS2,SH3BP5L,TPP2,NR2C1,BRD9,ADAT1,RCC2,SOS1,JMY,AVL9,MED1,ZDHHC21,WDR37,SEC22C,SRRT,FN3KRP,DNAAF2,ATG5,AP3M1,CPEB2,PPP2R1B,TRIM66,KIF5B,TNPO1,MSL2,IL17RB,POT1,STAG1,EIF5,TMEM267,ZCCHC8,PYGO2,COQ8B,ITFG2,RNF4,RRNAD1,KAT7,GNA13,AASDH,GBA2,RABGAP1L,KIAA0895L,MMD,NDUFAF6,ZNF74,PHYKPL,SF3B1,POFUT2,ANKIB1,PRKRA,ZFP69,PHKG2,NARF,PTGES3,BUD31,PIGM,ASB6,ATP11B,GOLGA1,GNL3,PLAA,MINDY2,RIPOR2,CENPT,USP24,POGZ,FAM219A,BRWD3,FBXO45,AKAP10,NUDCD1,RBMX,RBM4B,MRPS31,C21orf58,ADAT2,MAP3K12,TMEM143,ORC4,FUBP1,MTBP,SLC38A6,CAPN15,TADA2B,SMPD4,TRIM33,CXXC1,HMGB2,ZNF71,KIDINS220,DCAF1,DDX17,PSMA4,HAUS5,UBTD2,ELOC,FMR1,SPRING1,HDAC7,TBC1D7,EPB41,CTDSPL2,TMEM165,GNPDA2,FBXL12,SDR39U1,CYRIB,LIN52,SMC6,CDAN1,GPALPP1,TRAIP,RHEB,PCYOX1L,DLG1,ABCC5,E2F4,SPIN2B,CRYZL1,SLC22A5,STK36,GOLGA8B,ABHD3,SS18,ALPK1,ZFX,SMG9,CCDC88C,CBWD2,TIMM29,GOLGA8A,RABGAP1,PAM16,GNAI3,SETD4,STEEP1,TSNAX,ASNS,TYW5,SEPTIN7,USP3,CEP162,RBMS1,ZFP28,RAD18,ZNF17,SRCAP,CRBN,RNF169,POLD3,ZNF84,BAZ2B,CCP110,BICRAL,PDCD6,KIF15,WDR26,ZDHHC6,MDP1,PRPF40B,PCMTD1,JMJD1C,NGLY1,NAE1,VPS37A,LZTR1,ASB8,KBTBD2,ATF2,MRFAP1L1,CDK2AP1,DLGAP5,COPS7B,GSDMB,SEC22B,PEX2,HELQ,CPLANE1,ERI2,SLC25A32,OXNAD1,PRPSAP2,CSNK1G3,KRT10,GTPBP4,MCM7,NBPF9,BRD1,SPATA13,MFAP1,CHM,SUGP2,HSPA14,ARL2BP,PHF10,RAB6A,ING1,NUP50,UBE4A,GDAP1,ZBED4,WDCP,PLRG1,CCT6A,SLC25A40,ZFP14,NPEPL1,TUBGCP6,TIMELESS,CCDC14,SMARCC2,MYO9A,ACAD8,EIF2B5,GNPAT,XXYLT1,RABGGTB,ACTR6,UBA2,KLHL42,KNTC1,RANBP6,CEP72,SVBP,SMIM15,GKAP1,TAZ,SLC33A1,ATR,NIPA1,STRN3,DAXX,EOLA2,HSPA13,RAMAC,OGT,RCCD1,CPSF1,GZF1,TARBP2,BLZF1,CNST,FBXO5,CLOCK,DHX34,TUT4,RING1,DNAJC16,RBM15,CHKB,CEP89,ANAPC10,BBIP1,OSGEP,CLK1,ATXN7,MRRF,DHPS,PRC1,AKT1,MCMBP,RFX7,IQGAP3,RAF1,KPNA4,MAP3K14,GON4L,CDC27,RACGAP1,RBM22,CASK,CHIC1,ORMDL1,ZNF45,YTHDC1,COQ7,DDX51,BRIX1,PPP6C,TFCP2,GTF2H1,PASK,MLH1,MTMR2,ATG4B,CCDC191,TAF5L,TNKS,NR2C2,BMF,FAM229A,PPP4R2,TIMM10B,TAF1A,BICD1,SAE1,RMI1,NOP2,SCRN3,FAM114A2,ABCA7,TMCO6,STK25,NCAPG2,GLS,PIK3C2B,TMEM126B,MBTD1,SEPSECS,IFT122,MAN1A2,GAS8,DVL2,CEP192,ARHGEF11,VPS13A,HSPH1,BUD13,NUP62CL,ZFP3,JKAMP,HSD17B7,LONRF1,RNF214,RARS2,MAPK1IP1L,DPM1,PIK3R4,THADA,CEP20,FAM172A,ILF3,GFPT1,CAND1,LENG8,PER2,SMURF2,PPP1R12C,FBXL3,PRR3,ACTR3,NICN1,INPPL1,PPOX,FAM168B,WDR53,PPWD1,RC3H2,SLC30A7,SASS6,CLASP1,NHLRC3,TRIM65,COX16,ASTE1,ADPRM,COG8,MNS1,HPF1,CAPN10,KRIT1,CASP2,DCAF7,COG5,MICA,FAM136A,PROSER1,TMEM175,MTA2,SLC12A7,ZZZ3,HMGN2,ZMYM5,UGGT2,REXO1,C2CD3,TAMM41,CSNK1D,PARP12,GFOD2,PDCD6IP,DRC3,PCID2,SETX,MBNL3,CDK20,TOP3A,TRIM13,ARHGEF38,FGFR1OP2,GRPEL2,TMCO1,PHC1,LRRFIP2,RAI1,SACS,PABIR1,MTRR,CWC15,PUS7L,MED6,NFYC,CPSF4,CD47,GGNBP2,ERCC6L2,RTF1,EOLA1,CABLES2,FBXO3,ZBTB2,RTTN,REV3L,IWS1,AFDN,PEX26,AGTPBP1,CEP70,ENOSF1,MAU2,DZIP3,FOXM1,GANC,COA1,MOGS,GALT,MRPS23,FNBP4,MMS19,IL11RA,TOX4,TMF1,SSH2,MLLT10,BHLHB9,DENND5B,TSTD2,AHR,MED23,UNC50,CLEC2D,BAG5,SUMO2,BCAS2,KIFC2,TSNARE1,NIT1,HDAC1,NSUN2,ZNF720,STIL,MIER3,CDCA8,NCKAP1,BTBD7,MED29,RAB11FIP3,CLHC1,NDUFAF5,GPBP1,SCARF1,ARHGAP32,AP4M1,ANLN,MFF,LSG1,DRAM2,EHMT1,LRWD1,TTBK2,TP53BP1,CDK19,ZFHX3,ARID4A,PIGF,RNF115,SMAD4,ACP1,TTC37,NSL1,WDR27,FAM104A,EME2,BBS7,BSDC1,DCAF15,PLXNB1,TFDP2,SLC25A19,PNISR,GEN1,SFPQ,AMT,ACAP3,DNAJC9,ARHGAP42,ZNF10,TAF11,RNF149,CEP120,TRMU,CDC42BPA,B3GALNT2,TGFBRAP1,ROCK1,WASHC2C,ZNF598,CSPP1,INTS12,IQCE,FAM214A,N4BP2,PHF19,CEP250,ARID2,STAM2,TTC5,MALT1,PLEKHH1,YEATS4,DBR1,LHFPL2,HEATR1,KLHDC4,ZFAND4,PBRM1,CCNL2,RUNDC1,URB2,RRM2,ANKRD10,TENT4A,PPP4R3B,OBI1,NUSAP1,CHTOP,LSM5,TCEAL1,DDTL,CCDC50,PHF8,KYAT1,SSH1,OSBPL7,KAT2A,UBE2W,PHTF2,CHD6,U2AF2,ANKS6,BMPR1A,CLDND1,PLA2G6,CSNK1E,RNPS1,PDCD2,FBXW7,ZFP30,DPY30,SPRTN,MRPL50,POLI,AGFG1,LIN9,CCT2,PRPF39,KIF24,ZFAND1,TRIM45,SRRM2,PJA2,BTN2A1,MIB2,WHRN,TENM1,SLC4A7,CMTR2,GORAB,UBR3,CEP44,PROSER3,DDA1,GMCL1,C10orf88,SLC37A3,KPNA3,KRAS,ANKRA2,SOGA1,CELF1,CDC40,EPG5,CRYGS,PEX3,ACTR1B,OGG1,PMS1,QRICH1,FAM160A2,ZNF83,POLR1G,HCN3,C5orf34,DPH1,RBBP5,COPB2,SZT2,PRKDC,GIN1,FASTKD2,CD58,STK4,CRAMP1,ARL6IP6,NUDCD2,URGCP,CASP3,XRN2,CCAR1,SACM1L,MAP2K7,CHAF1A,PTP4A2,SAMD9L,CENPJ,C14orf93,DPH7,AREL1,MTREX,NSMCE4A,POLR3F,SLC10A7,EAF1,PNPLA7,HINFP,XPA,PCBD2,MFAP3,GTF2H3,APBB3,YPEL5,STX2,DYNC1LI2,RUFY2,CDYL,WBP1,TEPSIN,HCFC1,RAD17,TRIT1,TONSL,PDCL,LRCH4,NUP133,AGAP6,PELI2,BET1,PSMD6,MOB1A,GTPBP2,RBM39,EDC3,GPATCH8,PGS1,MDC1,NME7,CKAP5,BLOC1S6,TRIM39,INTS3,PDS5A,NEK3,BIN3,AP4S1,ERH,CSAD,RINL,ATRX,LMNB1,NOL10,TRIB2,RBM28,IKZF5,C2CD5,TMEM259,EME1,FRA10AC1,CACTIN,ZBTB5,BCLAF1,OGA,RASAL2,NUP42,IFT27,PAN3,MED28,RNF168,NUMBL,DDX59,COPS5,ISCA1,ZC3H4,NUMB,TTK,TM2D3,C1GALT1C1,OLA1,SCLT1,CALCOCO1,ANKRD52,METTL25,DPP8,MTG1,APAF1,PAK1IP1,TOGARAM1,FAM217B,LPGAT1,FAM76B,GTPBP3,RNF217,VPS29,EOGT,H2AZ2,ADNP,MBD1,ARID1B,TCF20,MRNIP,POLR2B,STK17A,ING4,INTS13,RSBN1L,RAD52,RRP8,REC8,CEP43,M6PR,DYRK1A,STRN,MARF1,INO80,CEP290,NEK1,PGGHG,LEO1,IFT46,RAD21,WSB1,CPSF2,RSPRY1,WDR61,USP21,ALS2,NSD2,TRIM52,NCBP3,PCBP4,ZC3HAV1L,TTC13,MICAL1,BAHCC1,BRPF3,MTX3,YOD1,MCM3AP,ELK1,TMEM230,STRADA,NAF1,RANBP9,TJP1,LMBRD2,TOP2A,TPRKB,CHURC1,PSMC3IP,CHML,GMEB2,DNAJC11,SAP30BP,C19orf71,TRMT61B,DOT1L,SLC25A45,MICU2,LDB1,TUBD1,UTP15,LONP2,CDCA7L,FRYL,TBC1D31,MAP4K2,DENND4B,NSUN3,NGRN,TEP1,MACROH2A1,MAN2C1,TAB3,DXO,DPP9,WHAMM,LIN7C,TET2,CCDC57,RABL2B,CFAP97,SPAG9,GART,TSPYL2,XRN1,TTF2,EPOR,POP1,ARFIP2,BOD1,BRD7,AP3B1,ANAPC1,WDR89,IFT52,TAB2,DHX38,STX7,QPCTL,LYSMD4,CCDC88A,RPS6KA3,N4BP2L2,DCLRE1C,OXSM,L3HYPDH,RNF34,UNKL,GPCPD1,ZNF24,TRAPPC12,BCCIP,FAM120AOS,PIGW,ULK3,KMT2B,IRAK4,RPL26L1,GSTCD,RHOT1,TP53INP1,KLHL28,KCTD13,RSF1,ABITRAM,VIRMA,PIAS3,CLK4,COMMD2,AMN1,ZUP1,USP30,RPAP1,ATXN7L3,PPIH,HMGXB3,KDM5A,MIDN,SDHC,FBXO34,BAHD1,ARHGAP19,SIAH1,TRIP4,NOD1,ARIH1,CARNMT1,ILKAP,ARID4B,FANCD2,FEM1C,GPATCH4,METTL17,FAN1,TOP2B,RPAP3,IKBKG,WDR83,USF1,UBLCP1,HS2ST1,RABL2A,MOV10,CASP9,RBBP4,SLC25A29,TMEM39A,FOXJ3,BMI1,SLC35A5,DERL2,CBX1,MIER1,NCOA6,TTC21B,NPAT,FANCF,HDAC3,ANKRD11,AP1G1,ARID1A,RAB3GAP2,C4orf46,ILF2,UTP23,NIP7,USP35,SETD5,ZFP62,SOCS4,BRAF,BAZ1A,NKAPD1,OSBPL3,SPOUT1,GUF1,SLC35F5,SRSF2,CUL9,PRRC1,SSR1,TSEN54,SKIL,UBE2O,RSRC1,TAOK3,KIF23,ANKRD28,FIGNL1,TEAD2,R3HDM1,FAM193B,BRD2,PNKP,LSM11,COG7,CZIB,ZFC3H1,MIOS,NFYB,CENPE,SP3,ARHGEF7,VCPKMT,HIPK1,TMEM50B,SIK3,GALK2,DPH3,PIK3C2A,MRPS25,DHX16,SVIP,PALB2,EIF2AK2,ZNF69,ABCE1,TRIM27,FMNL3,SLF1,MAX,MARCHF6,EIF4ENIF1,CCT5,CUL3,LTN1,RTRAF,ATM,UBN1,IFT57,SNX19,RBBP7,MED14,PLEKHG5,NUP54,GLI4,CDK13,TRAF6,ZC3H10,BBOF1,FEM1B,CABIN1,DBF4,RELCH,RSBN1,RBM27,ATG12,PIBF1,AHI1,LAMTOR3,CNOT6L,KDM5C,RNF144A,PGAP1,MOB1B,FAM111A,PARP11,GCFC2,ANKMY1,ASF1A,UBR1,PHF12,GPN2,INTS11,RPA1,EZH2,CLN5,SNRNP48,RC3H1,ZNF44,SMG1,TAF7,KANSL2,XIAP,ELP4,BCLAF3,TMEM43,SEC23B,CHUK,DNAJB14,PPM1B,MTOR,MCM9,IFT80,GMPS,NUP210,PHTF1,ABRAXAS1,ZCCHC14,PELI1,CDK5RAP2,OIP5,UBN2,PPP2R5B,KIAA0586,TSN,ABHD18,SLC5A3,SMCHD1,C11orf98,TBCB,SMYD4,KLF3,TARS3,PRKD3,ZNF41,ZC3H8,ARHGAP17,TRAPPC6B,ATE1,WDR82,RAB2B,KNOP1,SLC38A9,PGBD1,APPL2,EPS15,MEX3A,FNTA,SGTB,TADA2A,TGDS,WDR76,KMT2D,SYNRG,LRR1,CENPO,USP40,G2E3,TRAPPC13,GPR180,TSG101,ZSWIM1,LTB4R,TRIM44,TUBGCP3,CBLL1,ROCK2,TMEM218,ANKRD26,PSMD5,GSAP,GGA2,BTBD10,C18orf32,C2orf68,WAC,MRE11,NOL4L,RBM6,TRMT13,ARHGEF19,SREK1IP1,ARHGAP12,NT5C2,AGPS,VPS54,LYRM7,SPC25,PAXIP1,SYNE2,CBX5,RYK,TNFRSF14,EPM2AIP1,NAA35,PGM3,TPM4,FAM168A,LSM1,MLLT1,PSME3IP1,MAML1,GTF3C4,RBM8A,MPPE1,PHF5A,CROCC,TPR,NOC3L,PCGF6,RP9,CEPT1,DDX23,MCM4,DMXL2,NCBP2,SRSF7,CUL4B,TBC1D15,ATAT1,IFFO1,TNPO3,INVS,EXO5,CEP63,MYO9B,NAGK,CTBP1,WDR11,POMT1,PARPBP,EXOC2,KDM3B,ADPGK,RBM23,YTHDF1,CEP57L1,AKAP8,UBTF,VPS13B,DPY19L2,WDR12,KATNBL1,TAF4,C7orf26,PIGC,TBP,GABPA,SLX4IP,GATAD1,TET3,NR6A1,BNIP2,PPM1A,CLK3,INCA1,ATMIN,GFM2,UBXN7,LRCH3,CNOT4,SON,MSL3,DHX57,ALG12,MC1R,C1orf174,TYK2,RLIM,TDP1,SMU1,PTCD3,NREP,NFRKB,RAD1,CTPS2,BRWD1,CNOT1,NIN,DDI2,CSTF3,ABCC4,NAPEPLD,C12orf65,ENTR1,MLLT11,RO60,TBCK,SLC4A2,ACBD3,BBS10,SEPTIN2,SP4,PPIE,RBM43,SETD6,CLDN15,TMTC4,ARL5A,LNPEP,CDC23,ZNF34,KIAA0753,COMMD10,NDOR1,GEMIN7,SGSH,TMEM41B,DCAF17,LTV1,DDHD1,MAP4K5,TMEM128,ASF1B,RBM41,CWC27,GON7,CBX4,CIAO1,RNGTT,FBXW11,POLR2D,CCNL1,USP28,ASB7,SUMO1,VPS33A,POMT2,ZDHHC20,NCOR1,MEAF6,SCMH1,MADD,RBM45,NFXL1,YAE1,NR2C2AP,RNFT1,GEMIN2,DDX31,ADCY6,DCUN1D1,ABI1,NUP98,SPOP,WDR36,MED4,PRUNE1,RANBP10,TMUB2,RPS6KC1,KANSL1,ZNF3,TBC1D20,ZMYM3,DNMT3A,ABCD4,HAUS6,SYNJ1,PTPN2,WDR77,MAD2L1,CLINT1,GOLPH3,NEIL1,FAM161A,KDM2B,POLE,C12orf4,VPS33B,DDX5,KPTN,STX17,MRPS10,PPP2R5E,LIPT1,CWF19L2,PDE6D,LYST,PNN,MICAL3,DSN1,LUC7L2,GAPVD1,ARHGAP5,DGKD,BBS4,KATNA1,CASP8,CBX8,SNX13,TEX30,TRA2A,ALKBH1,KMT2A,REV1,NEURL4,PDSS1,ETV3,RWDD2A,NADSYN1,IMMP1L,CFAP44,CEBPZ,RBM19,GABPB2,PIGA,TMEM167B,MAPKBP1,ODF2L,C21orf91,TAF9B,SLC26A6,TRIM25,IRF3,TBL1XR1,NRF1,WASHC4,ZXDC,NSRP1,SPTLC1,FNDC3A,CCNC,PIGL,ZC3H7A,USP39,ARV1,DDX39A,BAZ2A,ZNF77,BRIP1,GEMIN5,DCAF8,EFCAB2,HJURP,ABCA5,LIN37,MAP3K4,CEP350,CXorf38,CENPN,CLASP2,SS18L2,ATP2B1,SUPT7L,PSME4,QSOX2,MED31,EXTL2,RICTOR,SNX16,ARL6,OSGEPL1,CYTH1,PACS2,RBM4,RAB11FIP2,IVNS1ABP,URI1,ANAPC7,EXOG,ANAPC2,UFD1,KCTD9,NCOA5,GABRE,MYO19,TRAPPC14,DCAF5,PRIMPOL,COPA,UBQLN1,TIRAP,SPHK2,RAB22A,WDR20,EZH1,LRP6,ELMOD3,FBXW2,PPP2R3C,POLR3A,TRIM62,GSTM2,BRF2,PRPF4,SLC7A6,DCAF13,MCM6,DNAJC7,THYN1,MRPS18C,ASXL2,SLC25A17,TELO2,SALL4,GTF2A2,MAP4K3,FAF1,AUP1,PFAS,SLC36A1,VPS52,FAM228B,HEXIM1,ELK4,TIGD1,CDC26,USF3,CLASRP,FBXO11,DFFB,DEDD,CWC25,TTC32,ZMAT1,UTP6,CSGALNACT2,ZW10,ZNF18,EIF2D,TMA7,RERE,TEX10,ITGAE,APPBP2,CYP2R1,TBC1D12,KIFC1,C1D,POC1B,CNOT2,SPIRE2,ABCA1,C1orf109,RBM48,PIKFYVE,AARSD1,RBM5,NKTR,FARP2,CEP170,SLC35B3,CUL2,SCYL2,PARP6,WDR33,PTPRA,C17orf80,TRA2B,KLHL7,PIAS2,CRIPT,MRPS14,TIPIN,ASXL1,TSC1,LRRC40,HSPB11,USPL1,TTC33,LIG1,NELFA,PRPF4B,TRAPPC2,PPME1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MRPL28,SLC16A3,RNH1,TOM1,SIL1,SLC9A3R2,RRAS,LDHD,CLTB,TXN2,SHMT2,TSR3,RENBP,ALDOA,HIGD2A,FKBP8,BCKDK,MVP,ACADS,TALDO1,DHRS4,TSPO,TKT,CD81,CTSD,ALDH2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000142396 | ENST00000590505 | exon_skip_287762 | chr17:28884224-28884315 | -16.57 | -0.2209 | FLOT2 | ENST00000394908 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000142396 | ENST00000590505 | exon_skip_333962 | chr2:219247112-219247246 | -18.84 | -0.1963 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_340759 | chr2:85552415-85552567 | -16.50 | -0.1138 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_353131 | chr20:58669290-58669453 | -25.90 | -0.1738 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_380242 | chr3:186784961-186785101 | -15.21 | -0.1268 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_382458 | chr3:38131595-38131638 | -10.51 | -0.2444 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_16568 | chr1:201989382-201989531 | -18.37 | -0.1481 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_95407 | chr12:95040475-95040597 | -16.33 | -0.1899 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_114365 | chr14:74290026-74290118 | -15.23 | -0.1904 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_114376 | chr14:74293153-74293248 | -15.02 | -0.1926 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_123601 | chr15:74897010-74897219 | -19.19 | -0.1109 | MPI | ENST00000352410 | Frame-shift | | ENSG00000142396 | ENST00000608004 | exon_skip_127618 | chr15:58890280-58890461 | -13.58 | -0.1151 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_290158 | chr17:42953723-42953778 | -9.14 | -0.1828 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_302168 | chr19:10680345-10680443 | -17.97 | -0.2191 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_326885 | chr2:74490024-74490127 | -19.30 | -0.2969 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_327748 | chr2:95410863-95411026 | -23.14 | -0.1630 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_370518 | chr22:50247691-50247776 | -14.99 | -0.3189 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_374497 | chr3:49999439-49999513 | -11.32 | -0.2136 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_442657 | chr5:74730259-74730398 | -15.42 | -0.1159 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_470226 | chr7:103307595-103307708 | -13.34 | -0.1321 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_511212 | chrX:71555189-71555385 | -18.54 | -0.1104 | OGT | ENST00000373719 | Frame-shift | | ENSG00000142396 | ENST00000590505 | exon_skip_377198 | chr3:123130479-123130616 | -18.46 | -0.1477 | PDIA5 | ENST00000316218 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_363026 | ENSG00000142396.9 | chr19 | 58313479 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363066 | ENSG00000142396.9 | chr19 | 58313552 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363070 | ENSG00000142396.9 | chr19 | 58313553 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363074 | ENSG00000142396.9 | chr19 | 58313565 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363078 | ENSG00000142396.9 | chr19 | 58313567 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363102 | ENSG00000142396.9 | chr19 | 58314302 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363134 | ENSG00000142396.9 | chr19 | 58314398 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363186 | ENSG00000142396.9 | chr19 | 58314500 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363190 | ENSG00000142396.9 | chr19 | 58314506 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363226 | ENSG00000142396.9 | chr19 | 58314568 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 | | LncEditing_363234 | ENSG00000142396.9 | chr19 | 58314577 | + | processed_transcript | ERVK3-1 | ENST00000610038.4 | lincRNA | ERVK3-1-011 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000142396 | LncEditing_363026 | UCS | chr19_58313479_+ | 3.908784e+00 | 2.874451e+00 | 2.255130e+00 | 2.319077e+00 | 2.039085e-02 | 2.373435e-02 | UP | | ENSG00000142396 | LncEditing_363190 | UCS | chr19_58314506_+ | 4.769130e+00 | 2.916016e+00 | 1.408992e+00 | 3.046424e+00 | 2.315807e-03 | 4.236232e-03 | UP | | ENSG00000142396 | LncEditing_363134 | GBM | chr19_58314398_+ | 5.278607e+00 | 4.296018e+00 | 3.365224e+00 | 2.612189e+00 | 8.996460e-03 | 9.848628e-03 | UP | | ENSG00000142396 | LncEditing_363190 | GBM | chr19_58314506_+ | 5.617862e+00 | 4.159399e+00 | 2.306026e+00 | 3.940419e+00 | 8.133950e-05 | 1.152428e-04 | UP | | ENSG00000142396 | LncEditing_363026 | BLCA | chr19_58313479_+ | 3.894809e+00 | 2.872258e+00 | 2.276000e+00 | 5.326006e+00 | 1.003959e-07 | 1.372246e-07 | UP | | ENSG00000142396 | LncEditing_363102 | CHOL | chr19_58314302_+ | 3.750450e+00 | 2.681529e+00 | 2.066081e+00 | 2.214815e+00 | 2.677277e-02 | 3.130736e-02 | UP | | ENSG00000142396 | LncEditing_363190 | CHOL | chr19_58314506_+ | 3.613761e+00 | 2.698615e+00 | 2.373708e+00 | 2.063805e+00 | 3.903622e-02 | 4.133247e-02 | UP | | ENSG00000142396 | LncEditing_363026 | THYM | chr19_58313479_+ | 4.971489e+00 | 3.963902e+00 | 3.060380e+00 | 3.274401e+00 | 1.058863e-03 | 1.476924e-03 | UP | | ENSG00000142396 | LncEditing_363134 | OV | chr19_58314398_+ | 3.156663e+00 | 2.131038e+00 | 1.764155e+00 | 6.969127e+00 | 3.189135e-12 | 6.759426e-12 | UP | | ENSG00000142396 | LncEditing_363186 | OV | chr19_58314500_+ | 3.445458e+00 | 2.298003e+00 | 1.711406e+00 | 4.596063e+00 | 4.305492e-06 | 5.386259e-06 | UP | | ENSG00000142396 | LncEditing_363190 | OV | chr19_58314506_+ | 3.218854e+00 | 2.204082e+00 | 1.830263e+00 | 6.268726e+00 | 3.640151e-10 | 6.309367e-10 | UP | | ENSG00000142396 | LncEditing_363226 | OV | chr19_58314568_+ | 2.875359e+00 | 2.304815e+00 | 3.133902e+00 | 3.330442e+00 | 8.670823e-04 | 9.502768e-04 | UP | | ENSG00000142396 | LncEditing_363234 | OV | chr19_58314577_+ | 2.987398e+00 | 2.346014e+00 | 2.867977e+00 | 2.968957e+00 | 2.988120e-03 | 3.170890e-03 | UP | | ENSG00000142396 | LncEditing_363026 | STAD | chr19_58313479_+ | 3.796415e+00 | 2.998374e+00 | 2.937227e+00 | 3.420141e+00 | 6.258870e-04 | 6.805392e-04 | UP | | ENSG00000142396 | LncEditing_363070 | STAD | chr19_58313553_+ | 3.940016e+00 | 2.889509e+00 | 2.235252e+00 | 5.710694e+00 | 1.125167e-08 | 1.601629e-08 | UP | | ENSG00000142396 | LncEditing_363074 | STAD | chr19_58313565_+ | 3.667291e+00 | 3.064941e+00 | 3.863162e+00 | 2.502103e+00 | 1.234581e-02 | 1.265512e-02 | UP | | ENSG00000142396 | LncEditing_363078 | STAD | chr19_58313567_+ | 3.677963e+00 | 3.070831e+00 | 3.842048e+00 | 2.593703e+00 | 9.494849e-03 | 9.831253e-03 | UP | | ENSG00000142396 | LncEditing_363134 | STAD | chr19_58314398_+ | 3.771018e+00 | 3.003799e+00 | 3.047240e+00 | 3.353840e+00 | 7.969851e-04 | 8.626475e-04 | UP | | ENSG00000142396 | LncEditing_363190 | STAD | chr19_58314506_+ | 3.647256e+00 | 3.015932e+00 | 3.646870e+00 | 2.829887e+00 | 4.656443e-03 | 4.867172e-03 | UP | | ENSG00000142396 | LncEditing_363026 | ESCA | chr19_58313479_+ | 5.917435e+00 | 3.062537e+00 | 1.052360e+00 | 6.136829e+00 | 8.418511e-10 | 2.265109e-09 | UP | | ENSG00000142396 | LncEditing_363066 | ESCA | chr19_58313552_+ | 5.424021e+00 | 3.547346e+00 | 1.632326e+00 | 3.896223e+00 | 9.770443e-05 | 1.225545e-04 | UP | | ENSG00000142396 | LncEditing_363070 | ESCA | chr19_58313553_+ | 5.495267e+00 | 3.200952e+00 | 1.282564e+00 | 5.989234e+00 | 2.108316e-09 | 5.229622e-09 | UP | | ENSG00000142396 | LncEditing_363074 | ESCA | chr19_58313565_+ | 5.164636e+00 | 3.592802e+00 | 1.910010e+00 | 3.139024e+00 | 1.695116e-03 | 1.898965e-03 | UP | | ENSG00000142396 | LncEditing_363078 | ESCA | chr19_58313567_+ | 4.881824e+00 | 3.573646e+00 | 2.222105e+00 | 2.814660e+00 | 4.882882e-03 | 5.270093e-03 | UP | | ENSG00000142396 | LncEditing_363134 | ESCA | chr19_58314398_+ | 5.423919e+00 | 3.294173e+00 | 1.390010e+00 | 4.403322e+00 | 1.066057e-05 | 1.488720e-05 | UP | | ENSG00000142396 | LncEditing_363190 | ESCA | chr19_58314506_+ | 5.182857e+00 | 3.484369e+00 | 1.745657e+00 | 3.462746e+00 | 5.346919e-04 | 6.243533e-04 | UP | | ENSG00000142396 | LncEditing_363226 | ESCA | chr19_58314568_+ | 5.127195e+00 | 3.586785e+00 | 1.939945e+00 | 2.329405e+00 | 1.983761e-02 | 2.046242e-02 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000142396 | LncEditing_363190 | 8.569982e-01 | 2.921211e-02 | 4.405737e-02 | | ENSG00000142396 | LncEditing_363026 | -3.431098e-01 | 4.797265e-03 | 6.589240e-03 | | ENSG00000142396 | LncEditing_363066 | -4.772367e-01 | 3.880905e-02 | 4.268115e-02 | | ENSG00000142396 | LncEditing_363070 | -4.657629e-01 | 2.455388e-03 | 9.435241e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
 |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000142396 | ENSG00000111364 | DDX55 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,SKCM,READ,PAAD,THCA | | ENSG00000142396 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,SKCM,READ,UCS,PAAD,THCA | | ENSG00000142396 | ENSG00000124193 | SRSF6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,SKCM,READ,PAAD,THCA | | ENSG00000142396 | ENSG00000079134 | THOC1 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,SKCM,READ,PAAD,THCA | | ENSG00000142396 | ENSG00000003756 | RBM5 | exon_skip_114365 | ENSG00000119688:chr14:74290026-74290118 | ABCD4 | ENST00000356924 | Frame-shift | UVM,READ,PCPG,PAAD,THCA | | ENSG00000142396 | ENSG00000100650 | SRSF5 | exon_skip_114365 | ENSG00000119688:chr14:74290026-74290118 | ABCD4 | ENST00000356924 | Frame-shift | UVM,READ,PCPG,PAAD,THCA | | ENSG00000142396 | ENSG00000004534 | RBM6 | exon_skip_290158 | ENSG00000266967:chr17:42953723-42953778 | AARSD1 | ENST00000427569 | Frame-shift | SKCM,READ,PRAD,PAAD,THCA | | ENSG00000142396 | ENSG00000003756 | RBM5 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | UVM,SKCM,READ,PRAD,PAAD | | ENSG00000142396 | ENSG00000004534 | RBM6 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | UVM,SKCM,READ,PRAD,PAAD | | ENSG00000142396 | ENSG00000079134 | THOC1 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | UVM,SKCM,READ,PRAD,PAAD | | ENSG00000142396 | ENSG00000003756 | RBM5 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,PRAD,PAAD,THCA | | ENSG00000142396 | ENSG00000004534 | RBM6 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,PRAD,PAAD,THCA | | ENSG00000142396 | ENSG00000079134 | THOC1 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,PRAD,PAAD,THCA | | ENSG00000142396 | ENSG00000004534 | RBM6 | exon_skip_511212 | ENSG00000147162:chrX:71555189-71555385 | OGT | ENST00000373719 | Frame-shift | UVM,SKCM,THYM,PAAD,THCA | | ENSG00000142396 | ENSG00000079134 | THOC1 | exon_skip_511212 | ENSG00000147162:chrX:71555189-71555385 | OGT | ENST00000373719 | Frame-shift | UVM,SKCM,THYM,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000142396.9 | ENST00000413518.4 | 116 | 44 | 394 | | ENSG00000142396.9 | ENST00000427361.4 | 129 | 199 | 588 | | ENSG00000142396.9 | ENST00000610038.4 | 103 | 308 | 0 | | ENSG00000142396.9 | ENST00000434052.4 | 116 | 320 | 667 | | ENSG00000142396.9 | ENST00000608070.4 | 70 | 548 | 336 | | ENSG00000142396.9 | ENST00000609864.4 | 93 | 539 | 258 | | ENSG00000142396.9 | ENST00000608004.1 | 107 | 215 | 535 | | ENSG00000142396.9 | ENST00000590505.1 | 89 | 72 | 341 |
|
