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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000126005

Summary for MMP24-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000126005

Gene symbol

MMP24-AS1

Gene name
HGNC
Entrez ID

101410538

Gene typeantisense
Synonyms
UniProtAcc

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Structure and expression level for MMP24-AS1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000001260054.505745e-011.896598e-03CHOL2.921317e-03

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lncRNA-Protein interaction for MMP24-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000126005ENST00000566203MMP24-AS1ENSG00000105619TFPT13.8492.9737P0C1Z6EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000126005ENST00000566203MMP24-AS1ENSG00000167967E4F145.8491.1603Q66K89TFNA
ENSG00000126005ENST00000566203MMP24-AS1ENSG00000180035ZNF4811.5290.133Q96MX3TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for MMP24-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
MORN2,RPL10,TOR2A,PPFIA3,NDUFA12,MFSD3,ABCB8,MCRS1,LIN7B,TAZ,RHOG,CRELD2,C19orf54,UCK1,CLIC1,KIF9,FAM162A,USF1,EMC3,WDR46,MRPL34,AATF,PSMB7,TNIP2,PSENEN,RNF215,TPRN,SNRPA,PMF1-BGLAP,UBALD1,ABHD8,HMCES,RPL36A,TMEM250,RPL35,GPATCH3,TOMM7,WDR45,COA4,RFXANK,CD151,SFXN4,ODF3B,TBC1D17,ASL,ZNRD2,WASHC1,TWF2,TFEB,RING1,RENBP,HDAC5,BICDL2,SPG7,FBXL6,UNC45A,POLDIP2,PRKAR1B,HMBS,NDUFA4,RPS17,ASCL2,SHARPIN,KRT10,SLC66A2,MYL6B,UBE2L3,FARSA,CLEC11A,LIN37,SCAMP3,C15orf61,APRT,HDDC3,TRIR,GDI1,HEXA,UCKL1,EIF3K,CCNQ,NDUFA6,TRAPPC4,TMEM259,GMEB2,DUS3L,PFKL,FPGS,CREB3,NELFB,VPS16,PEX14,TMEM187,UQCRC1,PSMG4,TAPBP,SLC39A4,TCTA,ARFRP1,R3HDM4,BCAP31,TMEM203,RUVBL2,ARHGAP45,RABL6,ADRA2C,ARPC4,IPO4,TMEM223,LRRC75B,LSM10,GMFG,NUDC,AKT1S1,SLC22A18,ARHGAP4,DMAC1,CHID1,MSRB1,NDUFS3,PHF1,SLC52A2,NDUFC1,GET3,JPT1,DXO,GFUS,ADAT3,FIBP,RANGAP1,UROS,DHRS11,ANKRD39,PPP1R11,COA8,SSR4,GNL1,CYBC1,RPL37A,UBA52,PNKP,C17orf97,NDUFA8,MRPS25,PSMB8,KIAA2013,BOP1,TMEM115,MAF1,C11orf98,HSF1,HSD17B8,MIIP,PIDD1,CCDC137,AP4M1,YBEY,PMF1,SPIRE2,MOB2,MYL6,RPS27L,B3GALT4,NUDT18,FNDC10,ENSA,INTS11,ATP6AP1,EFHD2,NR2C2AP,SIRT7,CYB561D2,LONP1,SRA1,SLC2A8,TAF6L,TUFM,C8orf76,PEDS1,KXD1,ECH1,TSEN54,PTCD1,MRPS11,POLR2L,MMP15,RPS6,SS18L2,NAA80,NDUFA1,ZSWIM7,TMEM186,PFDN6,IDH3G,TOLLIP,TMEM11,PCED1A,NPRL2,COX5A,EEFSEC,MAPK11,TANGO2,TOMM34,CPTP,IGSF8,FAAP100,ZGPAT,RCC1L,MRPL24,MED16,BABAM1,TEDC1,C19orf54,VRK3,ENKD1,PSMB1,OGFOD3,LRRC23,USF1,VEGFB,NDUFB1,WDR46,MCRIP2,SNRPD2,CENPB,CIRBP,CHCHD5,PGAP6,FDX2,OGFR,RBM10,CRIP1,SNRPA,RFNG,ARMC7,COQ8B,PLLP,SLC66A1,C12orf57,BCL7C,HEXD,CORO1B,PARD6A,DDT,PEX16,COX7A2,PRDX5,TNNC2,DECR2,RFXANK,ALDH16A1,EMC9,CD151,ATP5MK,TMC4,AAMDC,ZNRD2,TBL3,RING1,FCGRT,RRP7A,MAPK3,NOL3,SMIM24,RNASEH2C,ACOT8,PSME1,NDUFB11,CCDC22,TIMM13,MAGIX,ADAP1,MPG,RAB5IF,DGCR6L,COX14,SLC25A10,SMDT1,DNAJC4,SGF29,BORCS6,NPRL3,MYL6B,SWSAP1,METTL26,NDUFS8,PLEKHJ1,SMIM1,LRRC29,TMEM91,GDI1,PIH1D1,PPP1R14B,GADD45GIP1,MRPL28,HSF4,FAM50A,MACROD1,PAFAH1B3,PMM1,SNRNP25,ADCK2,C6orf136,NELFE,ABHD14B,VAMP8,C16orf86,RAB26,FAM174B,UBL5,ARFGAP1,FAM174C,R3HDM4,CTF1,TBCB,ETFB,LRRC45,BRICD5,CYSTM1,C1orf35,GFER,PCBP4,TTLL1,RABL6,GPS1,TCEA2,RPS19BP1,TMEM223,RHOC,NDUFA13,LSM2,POLR2E,NAGLU,CLN3,QPRT,ABHD14A,DTNBP1,TRPT1,JPT1,UQCR10,NME4,DOK1,RP11-523H20.5,SPSB2,WDR54,MICOS13,POLR3K,RABAC1,TIMM17B,OAZ1,RBM42,HSD3B7,C8orf82,MRPL57,P4HTM,NAA38,DSN1,FKBP2,BAD,PSMC5,COA3,PSME2,ACBD4,NUDT22,PPP1R7,MRPL55,C11orf98,HSD17B8,TELO2,NTHL1,CCDC137,SIL1,MPDU1,CYBA,B9D2,GTPBP6,XAB2,QPCTL,MYL6,C7orf50,LAMTOR2,B3GALT4,HSD17B10,EIF6,TSR3,CCDC159,SF3A2,NPEPL1,CYHR1,ERCC1,SYNE4,HMOX2,ISOC2,CLPP,PFDN5,LENG1,SIRT7,GNPTG,MCRIP1,SMIM22,TFPT,AKR7A2,CENPX,NMRAL1,TMEM179B,TAF6L,OVOL2,RPL36,MYG1,NDUFA11,PQBP1,SPRN,TMEM208,TXN2,GALK1,PSMA7,NDUFB2,POLR2L,NAT14,GPR137,ANAPC11,NUDT14,TMEM160,B3GAT3,SIGIRR,SNX21,PGP,SAMD10,ACD,CUEDC2,CNPPD1,AAR2,RALY,PET100,EEF1A2,VMAC,MCAT,DGAT1,RNF167,NUBP2,FAM89B,HDHD3,MVD,PCYT2,SLC25A11,ABHD11,DYNC2I2,SLC25A6,IRF2BP1,C19orf48,SIPA1,CFAP298,ATRAID,UBE2J2,INO80C,CCDC28B,ELP5,INO80E,COX17,PEF1,RPS11,GEMIN7,ISCA2,HRAS,DUS1L,BOLA3,NDUFV1,SCNM1,TPRN,B3GALT6,PMF1-BGLAP,GUK1,MRPL47,PPIH,FDXR,BCL7C,BLCAP,FAM207A,MALSU1,ZDHHC1,ZDHHC24,GHDC,KRTCAP3,RPS8,SEZ6L2,LEMD2,ALDH16A1,YIF1B,RCE1,RPL13A,PELI3,IFI27L1,ALKBH4,LRPAP1,NABP2,RNF187,MYPOP,PRELID1,PYCR2,C11orf68,TARBP2,BIN1,QARS1,SPATA24,RAC3,UNC45A,ASPHD1,LRWD1,TMUB1,IFI27,MARCKSL1,FAHD2B,MIEN1,S100A11,KRTCAP2,IMP4,ENDOV,SERTAD3,GSTM4,TRAPPC2L,TNFSF12,SPRYD3,PDZK1IP1,ACTR1A,SAP30BP,PSMC3,TRMT61A,PHLDB3,PIH1D1,PPP1R14B,TIMM29,TXNL4A,BLVRB,TYSND1,ATP6V0D1,CAPN10,MED27,MDH2,SLC38A10,CTU2,DEDD2,AGAP3,CLTB,SNRNP25,MRPL11,COA6,LMTK3,DUS3L,CTU1,ZFYVE19,JUP,THAP4,CEP131,COMMD5,C1orf50,RAB1B,MEPCE,SHKBP1,PELP1,CTF1,COX6C,ETFB,LRRC45,C1orf35,ARFGAP2,TMEM134,GABARAP,PHLDA3,FARS2,RECQL5,SLC12A9,MFSD12,DBNL,EMC10,YIF1A,DPY30,NDUFB9,CSTB,CCDC12,CDK2AP2,BCL2L1,DNAJC30,YIPF3,BRMS1,TCF25,ATP5MG,SDF4,POLR3K,MTLN,TPRA1,FKBP2,BAD,PTGES2,KDF1,BSG,RNF25,UQCRB,MRPL55,CDK5,CETN2,UBL7,SAMD1,LMAN2,BANF1,DCTN2,DAGLB,PMF1,CTDSP1,RAB13,SPIRE2,SART1,PLPP2,DAPK3,STK32C,PPP2R3B,PPP1CA,TSC22D4,COMTD1,CZIB,TBC1D10B,PYM1,TPGS1,FAM71E1,SHISA5,ZBTB8OS,HIRIP3,CENPX,PARL,MED19,NIT1,CFL1,MRPL36,GNG5,ATG4B,CTDNEP1,REEP4,DPM2,CARD19,ATP5MJ,UBE2C,MRPL17,MBOAT7,GPR137,POMZP3,PSMA5,SSR2,SENP3,NPC2,ETHE1,NT5C3B,SPATC1L,CKB,SPINT1,TXN,NDUFS6,PFDN2,FLAD1,TRAPPC12,UBXN11,SSU72,HDAC11,MVD,TSEN34,CTBP1,CNTROB,AP1M2,FHIT,SIPA1,OGFOD3,DPP7,ATP5PF,LGALS1,TMA7,NFKBIE,ERP29,SEC61B,MAN1B1,TPRN,B3GALT6,DPM3,CKMT1B,NCKIPSD,HEXD,CAPNS1,MLF2,DENND6B,C1orf159,PLPPR2,MARCHF9,TBC1D17,TRIM11,MYL5,NUDT2,TMEM86B,CCDC106,NAPRT,EMP3,COMT,SLC50A1,BAX,ABHD17A,APEH,CENPS,SLC27A3,JTB,TUBB4B,PPAN,MRPS2,C8orf58,DUSP15,MAPRE3,TPRG1L,FUNDC2,BOLA1,MESP1,CYB5D2,CASTOR1,ARMC6,PTPA,KCTD13,SURF2,RABL6,DEXI,NDUFV3,STMN3,ELP6,DNAJB12,AKT1S1,DBP,DUS2,CCDC96,SEC13,MLST8,SDF4,ATP6V0E2,GSTO1,SMARCD3,UBTD1,GLRX5,DHRS12,NOL12,PNKP,RUSC1,PAOX,PYURF,HHLA3,TRAPPC9,VPS72,RAB13,SGTA,APOO,EGFL7,CCDC159,PAM16,EFNA4,EFNA3,TXNRD2,SH3BGRL3,CDKN2D,MRPL14,PMVK,NOXA1,COQ4,C9orf116,NIT1,MSRA,CCDC107,THOP1,C1orf56,SLC7A4,RPL36AL,ADAM15,NPDC1,PMPCA,MOB3A,MRPL20,ANKRD13D,ZFAND2A,SURF1,PPOX,PGP,PFDN2,PPP1R3F,UBXN11,PTMS,OCIAD2,DDX41,KLF16,IRF3,TEDC1,CCDC167,SIRT2,GPAA1,RPS29,SOX12,PSMG3,HSPBP1,SERGEF,MAP2K2,CLIC1,TMEM150A,JOSD2,DEGS2,VEGFB,WDR46,STOML1,SNRPD2,DDX49,ZNF48,NECAB3,UBXN1,MRTO4,SLC25A39,TSSC4,PSENEN,IL32,RFNG,PSMB3,COQ9,SDSL,BRI3,KRT8,P2RY11,PTRHD1,SLC66A1,ARF5,THAP8,MICOS10,PPIE,WDR45,LCMT1,SEZ6L2,DECR2,NOC4L,CKLF,VPS4A,PELI3,PNKD,HOMER3,CISD3,MED25,TBC1D17,MYPOP,NARF,FAM3A,CIAO2B,CDPF1,SNF8,TRADD,COPRS,YIPF1,NCAPH2,RNPEPL1,ASPHD1,PPCDC,EIF3G,TMEM161A,SWI5,SLC50A1,CXXC1,RPL27,LAMTOR1,CCS,CCDC57,MCOLN1,TBC1D22A,DNAJC4,C1orf122,MRM1,MRPL52,LIN37,GALE,GPR35,AIFM2,MZT2A,OTUD5,CSNK2B,MEA1,PHKG2,COPE,SYCE1L,TMEM238,CAPN10,CRIP2,RNF5,LSM3,HSF4,CD2BP2,NUTF2,PAF1,LPAR2,MRPL11,COMMD1,TMEM234,THAP4,BOLA1,ZNF593,ABHD14B,NOSIP,SPATA20,HINT2,MRPL54,KCTD13,MAP2K7,RTN4IP1,HSD11B1L,PCBP4,MBD3,ARPC4,GPS1,CHMP1A,DBNDD1,POP5,FLOT1,CD81,PRADC1,NDUFAF8,GPANK1,FIZ1,AKT1S1,JMJD4,RNF126,ABHD14A,UQCR11,ATOX1,AP2S1,TIMM10,RTN4R,METTL27,CENPT,EPN1,NME4,RP11-523H20.5,CCHCR1,PDRG1,WDR54,NFKBIB,MICOS13,EVA1B,CFAP410,FIBP,BCL2L12,DHRS11,CNPY3,FUZ,S100A13,UXT,SSR4,USF2,COASY,TMEM120A,PSMD13,PNKP,SPATA33,TBC1D7,NUDT22,BOP1,RAB4B,HSF1,AGPAT2,COMMD6,MZT2B,HMGN3,LMF2,PRMT7,RNH1,ISG20,NFKBIL1,UCP2,QPCTL,STX5,B3GALT4,HAUS7,DTYMK,ARMC5,RANBP3,SAC3D1,SLIRP,DEAF1,TBC1D10B,TMEM258,IMP3,LYPLA2,STX8,NEK8,COPS9,AKR7A2,NDUFAB1,SDHAF2,MRPL36,PIN1,TRAPPC3,ATG4B,COX6B1,E2F1,RNPS1,SMIM4,DUSP28,CFDP1,MAD1L1,VPS9D1,FBXL8,PUF60,PNPLA6,PRAF2,SUGP1,KLHDC3,CCDC85B,PFDN6,EIF3I,IDH3G,TIGD5,NDUFS6,GLI4,PFDN2,SEPTIN1,ARL16,ERAL1,IFI35,SPC24,MYDGF,LSM4,APBA3,NR1H2,MRPS24,IRF3,PPFIA3,COX4I1,ELMO3,PSPN,SIRT2,TRPM4,SYMPK,IFI27L2,NXT1,DHPS,TXNDC17,ENKD1,PFN1,KPTN,SLC10A3,MIER2,RAB25,GEMIN7,FAM98C,ISCA2,ESS2,DDX49,ILVBL,MRPL34,NECAB3,ALKBH7,PYCR3,PGAP6,RNF215,MFSD10,ARMC7,SDF2L1,ABHD8,GRWD1,GPATCH3,GPI,UBE2M,MLF2,KLHL22,SPAG7,FZR1,ILKAP,EMC9,CLASRP,HPS1,ITPA,ODF3B,MED25,COMMD9,PRKD2,TOM1,SEM1,INPP5K,RENBP,AUP1,DYRK1B,SYNGR2,TRADD,MRPS12,NCAPH2,PPP1R37,PSME1,PSMD8,DOHH,EMD,TMUB1,PCSK4,OSCP1,ATP6V0B,C19orf25,ATP6V1E1,SMG9,HS1BP3,NINJ1,RPL27,MED10,TOMM22,MCOLN1,COG4,GAL3ST1,DDRGK1,MECR,CHTF18,NDUFS8,PLEKHJ1,SUV39H1,TRIR,NEDD8,SAP30BP,FBXO2,EMC8,MAD2L2,COPE,TPD52L2,PPAN,MRPL2,VASP,SNX8,KDELR1,HSF4,STARD3,NAGPA,UROD,SNX17,AGAP3,ARPC1B,MYL12B,ADCK2,SRM,ACOT7,POLRMT,MED15,HDDC2,ADPRS,TBCB,SEC61G,GTF2F1,RECQL5,CHCHD2,SARS2,CHMP1A,BTBD2,TRMU,DNPH1,VAT1,TUBGCP2,NUDC,C20orf27,IFT27,PCSK1N,VAC14,NOP53,B4GALT2,UNC93B1,GET3,KAT2A,CENPT,CHMP2A,ATP6V1F,ERCC2,NUCB1,NFKBIB,STN1,TMEM9,GFUS,TTC1,UBL4A,RPS10,FBXW9,BCAT2,BCL2L12,TMEM101,PDAP1,FUZ,NDUFAF5,TRIM28,DNAJB2,PES1,DAD1,PSMB5,SPATA33,C19orf73,AXIN1,TMEM115,PRR7,BNIP1,DDA1,TMEM60,LMF2,RPS13,TCIRG1,SNU13,STX10,SGTA,ERI3,LAMTOR2,SERPINB6,SDF2,RABGGTA,TRIP10,NSFL1C,FBXO44,DYNLL1,CDIPT,SLC25A35,SLC9A3R1,NUDT1,CYB561D2,CDK5RAP1,MVK,GMDS,ANXA11,THOP1,AAAS,EIF2B4,STK16,E2F1,KLHDC4,CD63,ECSIT,PTCD1,COX7B,CBY1,MBOAT7,FBXL8,POLR2I,PLD3,NAT9,BBC3,GIPC1,NPC2,CDC37,ANKRD54,ETHE1,SH2D3A,PDZD11,GPR108,ACD,CARS2,SLC25A1,ELOF1,PIGZ,CTSD,PPP1R12C,SNRPB,BRAT1,RNF167,MRPL37,TSEN34,GSDMD,TOMM40,PTMS,SLC25A11,COX4I1,FAM234A,WDR83OS,PSPN,MPND,ECI1,THOC6,PPP1R16A,ENKD1,TNFRSF14,TMEM150A,SLC10A3,LRRC23,INO80E,SCRN2,MRPL27,B4GALT7,FAAP20,VEGFB,MCRIP2,THYN1,SCAND1,ZNF48,ALKBH7,CIRBP,TMEM53,YPEL3,THAP3,UBOX5,CCND3,FN3K,NSMCE1,ABHD12,CST3,PARD6A,CACFD1,VPS28,RILP,UBE2M,RBBP8NL,ALDOA,PRDX5,CTSH,TMC4,ITPA,MYL5,TRABD,CNFN,BICDL2,POLR2J,SNRPB2,POLL,USE1,COMT,RIN1,SH3GL1,TAX1BP3,MRPS34,CNKSR1,UQCC2,MPST,ROGDI,FKBP8,ZNHIT1,SH3GLB2,NDUFB7,SHARPIN,LMF1,DNAJC4,DDRGK1,SMUG1,GALE,YJU2,G6PC3,BABAM2,FBXO2,LRRC29,EMC8,ZSWIM1,MVB12A,RASSF7,BLVRB,UBE2I,RETREG3,NUDT16L1,APEX2,H2AJ,ATPAF2,CCDC24,PRSS8,TMEM234,WBP2,NDUFB8,NDUFA2,PCBD1,VPS16,ABHD14B,NOSIP,FLOT2,SIRT6,RABEP2,CHADL,NDUFB10,ARFRP1,WDR83,SLC6A8,ATP5MC2,TECR,ZNRF1,MIEF2,VKORC1,LRMDA,TMEM129,AP5S1,SHC2,PXMP4,BLOC1S1,EMC10,TLE5,TRPC4AP,ATP5F1E,NEURL2,PIGU,CDIP1,SMPD2,ABHD14A,UQCR11,STK11,B4GALT2,ATP5F1D,PHF1,PIGQ,ACYP2,TRPT1,CHMP2A,FBXW4,CHKB,CCDC92,BRMS1,IDH3B,SPSB2,MICOS13,ANKS3,UBL4A,MVP,RANGAP1,TIMM17B,G6PD,TMEM54,TRIM28,RAB17,GGT7,CTSA,SNTA1,CHMP4B,COMMD7,NOL12,SPATA2L,GSS,NUDT22,ATP5IF1,MAF1,TMEM115,CHPF,EMG1,TMEM175,MTG2,ARSA,HDAC10,TLCD1,TSR3,INTS11,TRIP10,HMOX2,CLPP,FBXO44,TXNRD2,MRPL43,PFDN5,PEX11G,REX1BD,GNPTG,CYB561D2,NEK8,FAM71E1,TFPT,HIRIP3,SERF2,NMRAL1,RPL36,LGALS3BP,BST2,MYG1,SGSM3,PQBP1,TMEM208,RNPS1,MRPS26,MBOAT7,GRINA,TRIOBP,UBXN6,TP53I13,MYL9,NDUFA3,NDUFA1,TAF10,RHPN1,EIF3I,GPR108,PTOV1,SAMD10,PGLS,SEPTIN1,C19orf53,PCED1A,HEBP2,DPCD,NPRL2,RRAS,PET100,VMAC,STAP2,SLC35C2,TUSC2,CPTP,ORAI3,ZGPAT,CNTROB,CRB3
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
KRTCAP2,DTNBP1,ETHE1,LRRC23,CENPB,ATP6V1F,NUDC,POLR2E,NIT1,PEX11G,PSMB3,CCDC167,PGLS,HHLA3,FAM110A,PDDC1,VRK3,ARFGAP2,SART1,TNFSF12,PQBP1,CUEDC2,MED16,GPATCH3,MAPK3,EIF3G,URM1,FKBPL,TRAPPC3,KRTCAP3,PIH1D1,ZDHHC24,COX6A1,ALKBH4,SCYL1,NUDT14,OSCP1,TUSC2,RNF167,MIIP,PRDX5,ATP6V0E2,VMAC,HINT2,GPR137,JTB,ANKRD54,TWF2,CDC37,GSTK1,MYL5,TIMM22,CORO1B,C14orf2,CPNE1,MANBAL,NDUFB11,MARCH9,PPCDC,NT5M,TBC1D7,NT5C,LEMD2,NABP2,FAM234A,DDRGK1,MACROD1,MLF2,RPP21,SYMPK,RPL36AL,PPIE,JUND,RPL35,PKIG,SLC27A1,CDIPT,PTCD1,ENKD1,HCFC1R1,MAP2K2,PALM,NIT2,SLC25A11,GADD45GIP1,MAD2L2,CAPNS1,S100A6,C16orf91,ATP5I,COX4I2,GSTM4,FKBP8,TAZ,MRPL11,YDJC,FAM174B,OTUD5,MEA1,G6PC3,VPS72,DHPS,PTMS,WIPI2,CLPP,VAT1,SNRPB,TSC22D4,PFDN4,SCO2,PAOX,UBXN1,GNB2,CSTB,SNTA1,ACTL10,TMEM9,NOSIP,THAP4,KLHDC4,HMOX2,UBXN6,AIP,RBM10,GPAA1,ICT1,NDUFB1,C8orf58,ZBTB8OS,ENTPD6,PSMD4,EMC8,CDC34,LSM2,RAD9A,NOL3,UBALD2,QTRT1,BLOC1S1,INO80E,PSMA5,ABHD12,RBM42,ZSWIM7,INO80C,CLTB,PSMC4,B3GALT4,SAT2,SPINT2,HIST3H2A,SHKBP1,IFI27L1,SCNM1,THOC6,ATPIF1,S100A13,SPAG7,CHCHD6,WDR13,SNRPA,PPAN,BABAM1,ELMO3,SGF29,KLF16,TRIM11,SLC25A10,NMRAL1,C9orf16,NPDC1,MRPL4,CTSD,DGAT1,TTLL1,THOP1,STOML1,MEPCE,PRSS8,SPAG4,APEH,ENDOG,DEDD2,GPX4,BOP1,RAB25,BAX,LONP1,PARK7,ILVBL,PSMB4,STX8,PPP2R1A,NSMCE1,SAMD1,SNRPC,GLTSCR2,ATRAID,ITPA,CNFN,PRR7,COMMD9,SLC25A6,SHFM1,TIMM17B,FBXW9,VPS28,CUTA,KLHDC3,LAMTOR4,OCEL1,BANF1,PTDSS2,PFDN2,TSEN54,COX8A,NTMT1,MYPOP,GGA1,CCDC130,ECI1,FAM195B,CLTA,NUDT22,TRIOBP,PPDPF,DYNLL1,EIF6,C10orf35,C19orf54,SLC25A35,NECAB3,CAMSAP3,RASSF7,ASCL2,C20orf27,ARIH2OS,C20orf24,MRPS24,NDUFA8,ATP5J,UFSP1,TTC1,NUDT1,UBA52,UXT,ANKRD39,SGSM3,LAMTOR2,POLRMT,ABHD11,ALDH16A1,SPSB2,HES4,KLHL22,OXLD1,ATP6AP1,HM13,LPAR2,GSTP1,ELOF1,TUBB4B,C16orf86,EEF1A2,HIRIP3,BCAT2,PSMB1,TXNRD2,C2orf81,BBC3,C7orf50,PIDD1,UCP2,LRWD1,B4GALT7,TMEM160,DNAJC4,MRPS2,C14orf79,SSR2,BAD,RPS27L,RPSA,KRT8,NDUFA3,PRR13,YIF1B,DLGAP4,H2AFX,CCDC137,CCDC106,ARFRP1,CMTM7,KPTN,PCSK4,NDUFS5,ANAPC15,ZGPAT,MFSD12,CITED4,ZNF48,HSF4,RRP7A,GSS,DDIT3,RENBP,C9orf116,SYNGR2,DXO,PPP1CA,TRMT112,USMG5,BCAP31,CIRBP,KIAA2013
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.
Only predicted by TDF
GABPA,TRIM33,CRY1,C16orf72,GIGYF2,CLTC,NUP98,NOC3L,TAF1,WAC,ZC3H12C,FRMD4B,VPRBP,SMARCA5,SMARCA2,ANKRD46,CASC4,FAN1,TIFA,FBXW8,ELP2,CDK5RAP2,RAB11FIP2,POC1B,PAWR,PLK4,ELF2,RALGAPB,RNF219,ZSWIM6,KIAA0355,CASP8AP2,LIMS1,HAUS6,SLFN11,USP32,EP300,CTTNBP2NL,ATF1,DDX52,ACVR1,LDOC1L,UBXN7,NUS1,CCSER2,ANKRD13C,ATG4C,TET2,CTSO,INTS3,TRIM24,TCAF1,CALCOCO2,TRIM5,ARID4B,RHOBTB3,DDX59,ATL2,IRF2,UHRF1BP1,PTPN9,FBXO8,VKORC1L1,EVI5,SOS1,TMEM263,SSH1,ASH1L,C2CD5,SMU1,RAPGEF1,CANX,BROX,PRDX3,UBTD2,RALGPS2,SPICE1,WNK1,TRAK1,FAM168A,DNAJC16,TMED5,DEK,DHX15,LANCL1,SLC38A9,RCOR1,MOB1B,ARAP2,CDK13,BCL9L,RUFY2,KCTD3,BRD3,MED21,MED1,CFLAR,SRPK2,VPS36,TERF1,PHF2,SRP72,UGGT2,GSE1,RBMS3,ERI2,SEC22B,CEP44,KIDINS220,COL4A3BP,CDV3,TNKS2,NSL1,SOCS5,BMS1,RP2,CCSAP,MED13L,MYLIP,RAP1B,ATL3,XPO4,SPRED2,REST,METTL6,PUM2,TUBGCP4,TMED2,WWC2,TRIM23,ARL13B,VEZF1,ABCB10,RYBP,NBPF12,LAMC1,APAF1,C2orf44,NCK1,FER,GEMIN5,KMT2E,MAK16,ITPR1,EIF2S3,BMI1,SLK,ERAP1,CRKL,MBNL1,DIEXF,FAM208B,SPDL1,JMJD1C,NAPEPLD,PPP2R5C,SPG20,KIAA1551,ITPRIPL2,AGO4,ATAD1,CAMSAP2,CPSF2,PARD3,BRD2,FAM133B,LRRFIP1,SLC4A7,MINA,PLEKHA5,GNE,ELMSAN1,SEC23IP,PLXNC1,AGO1,ZC3H11A,MFN1,ACBD3,DBR1,PIK3R4,SUSD6,USF3,LARS,SSR1,XIAP,MLLT10,ACTN1,MPHOSPH9,DDX46,TLK1,FNDC3B,ZFHX3,UBE2J1,CUL3,PDCL,BDP1,USP33,HPS5,ANGEL2,SECISBP2L,KDM6A,SLCO2B1,NF1,ELF1,THAP6,WDR35,LPIN1,GTF2I,ZBED6,ZFP28,CEPT1,TOR1AIP1,CEP135,AIMP1,CSDE1,CLIC4,PATL1,FOXK1,SLC35A3,PAN3,PRRC2B,MDN1,HSPG2,MAP3K1,PRIM1,USP34,TXNRD1,DHX9,PDCD6IP,ZBTB6,MCM3AP,FSTL1,GMEB1,ERC1,SEC24B,KDM5A,PAFAH1B1,RFX7,KANSL1,SETD7,WDR60,SMAD1,FEM1B,IQGAP2,TBC1D5,GORAB,SMG1,ADGRA3,CDK12,CERS6,LONP2,NUDT4,EPC1,DDI2,TWSG1,GCN1,TBP,SPTBN1,PGAP1,MOB1A,CTPS2,RCHY1,CLIP1,MYOF,LCOR,TAF2,RAP2C,ETFA,LDAH,KLHL7,UBE2V2,USP4,RSPRY1,EIF4G2,MAT2B,PIK3C3,C12orf66,SPPL2A,ZC3H6,WRN,SUV39H2,LCORL,TMA16,MCMBP,SEC31A,YOD1,TUBGCP3,POLD3,HEATR6,PPM1D,FAM120B,YEATS2,GAB1,USP6NL,SMG6,CSNK1A1,ZNF45,TSC22D2,TRAPPC10,DCAF5,ABHD18,EYA3,USP8,ANKRD26,SGTB,NFX1,AMMECR1L,TRMT10A,GAPVD1,NCOA1,ARFGEF2,WAPL,RALGAPA1,BAZ1B,SLC25A24,PTPRG,MGAT2,KLHL11,LRRC40,MFSD8,TGFBRAP1,JARID2,UBR5,KIAA0430,LRCH3,KLF12,S100PBP,NDFIP2,SH3BP5,CBX5,RLIM,WDR43,ZBTB2,CCNY,PRMT6,FKTN,RB1,DHTKD1,SLC9A6,ABHD16A,SAR1A,NSD1,NEK4,ELL2,FBXW7,LYRM2,ZYG11B,RASSF2,BRCC3,DNAAF2,DHFR,SMARCC2,SETD2,SLC6A6,VANGL1,SLC33A1,SF3A1,BRWD3,ORC2,EIF3J,PPIL4,SLC30A1,BNIP2,ITCH,PPID,GNG10,RORA,EPRS,FBXO11,SENP2,AIDA,ITSN2,CBL,UHRF1BP1L,NCBP3,SLC39A6,RAB3GAP1,KPNA5,SZT2,PAK2,BCL9,CENPE,MYNN,ARID1A,PMS2,THAP9,ZUFSP,RIF1,CELF1,UNC119B,KRIT1,ARID2,KDM1B,TRAM1,EFCAB14,FBXL3,NOP14,APPL2,CCT2,GPN3,CENPJ,DOCK1,HBS1L,CCDC82,ROBO1,PTPN12,MCM10,USP28,TBCK,KIAA2026,PAPD5,KIAA0907,VAMP4,EXOC2,GTF2H1,C9orf72,SYNJ2,RNF38,COPA,SSFA2,GIT2,NID2,POLR3A,CDC23,PHTF1,NRAS,HIF1A,TAF5,NAV2,MAML2,ARIH2,OSBPL11,SMIM13,RC3H2,EAF1,NLN,GNS,EML1,ZZEF1,MR1,LIN52,TRIM22,SUN1,RC3H1,TMX3,CLPX,HECA,PSMD5,SPIN4,CDC42BPB,C18orf25,MED28,RPL7L1,NID1,FOXJ2,FAM175B,NUP205,GNA13,IPP
Exist in public source
NA

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lncRNA-RNA interaction for MMP24-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
IDH3A,E2F5,METTL14,SCAPER,ZFP28,MSI2,ANTXR1,UTP20,DAAM1,TBC1D5,AIDA,TCF20,SCFD1,DCUN1D4,HMGB1,KLHL18,TPM3,TMEM161B,RIOK3,CLDND1,MAT2B,USP53,PSMC1,UBAP2,PTCD3,RAD18,SACM1L,MAN1A2,MTF2,TMTC1,RFX3,VPS13A,TRIM5,MRPL19,TDG,ATP11B,PDPK1,PGAP1,CEP120,CALD1,NMD3,SP100,PTPRE,SAR1A,TRIM24,CLASP2,CNOT7,CDC42BPA,ITSN2,MIOS,RBMS3,POLI,ABHD2,TM9SF1,FAM102B,GTF3C3,HOMER1,RNF145,CNOT2,BAG4,CNEP1R1,AK6,UBAP2L,AZI2,FBXW2,NUDT4,IFNAR1,ALMS1,ABL2,KBTBD2,GTF2I,NUP58,TGOLN2,STX7,NIN,KIF1B,PRKAR1A,SLC25A40,ERAP1,TLR1,SLC25A32,LPP,REV3L,CPD,ORC3,UGDH,DYNC2I1,ATP6V0A2,XPNPEP3,EIF2AK2,ARHGAP32,RPRD1A,SPOPL,NAPG,CASD1,UACA,FAM168B,SINHCAF,ADCY7,KLHL28,NAF1,FRS2,SCP2,WDR82,EDC4,ACTN1,RCHY1,RNF214,DCTN4,ZFAND1,PPAT,PDXDC1,GPATCH2L,CHORDC1,FAM91A1,KMT2D,TRAPPC8,CEP76,RSBN1,RNF111,IFNAR2,VPS13D,PRKACB,TRPM7,TCEA1,C9orf64,LUZP1,ALG10B,TBCCD1,MAP3K20,SMURF2,RAF1,SMU1,ESF1,RHOBTB3,UTRN,PIKFYVE,RGP1,LBR,RAB3GAP2,NUP153,RPL7L1,USP13,DET1,SLC35A5,MDM1,LINS1,VPS50,KDSR,KATNBL1,XRN1,EPG5,AASS,WDR89,ZCCHC14,PDCD6IP,TUBGCP5,CDCA7,CHD2,GTF2A1,MPHOSPH8,PPP1R2,SMAD5,SCLT1,ABI2,SETD7,EHMT1,CFLAR,TMA16,ANGEL2,UGGT1,NSD2,GCC2,SMIM15,UTP25,F2R,FEM1B,URB2,RPS6KB1,CWC22,ZFYVE9,EMC1,SCAF11,CNOT1,GMEB1,DIABLO,TSTD2,ACIN1,UBAP1,USP15,YPEL2,WWTR1,MINDY3,CDC14B,SNX14,BAZ2B,KIRREL1,STK26,ATL2,IPO11,SMC4,NSUN6,PMS1,KATNAL1,CHIC1,GFPT1,MACF1,SH3GLB1,LIMA1,NUMB,WDFY2,ATP2C1,C5orf24,SUPT16H,ILK,HAUS6,UBE2E1,RRN3,FARP2,ATF7IP,RBM4,BRAF,CD47,DYNC1I2,NEK9,DKC1,RPAP3,ARHGEF6,POP1,LRRCC1,CORO1C,VHL,USP48,GARRE1,ETNK1,MAML2,LNPK,STK38L,MAPK1,RNF169,NOM1,ERI2,PRIM1,SPIN4,ITPRID2,RAI14,GNS,EYA3,MIER3,USP9X,TMEM168,RHBDD1,METTL8,PLXNC1,MTO1,TNFAIP8,SRSF1,SSH1,BICD2,KLHL5,SMCHD1,SERINC1,IRF2,PSIP1,FAM76B,ZYG11B,AP3M1,PCMTD2,LAMP2,KIF2A,POLK,CCDC91,ELK3,DCAF17,ABCE1,PICALM,PHF10,FAM114A2,PHF2,THAP5,INPP5B,CKAP5,HDHD2,HERPUD2,FAM172A,ASNSD1,MBTD1,CREB1,CEP295,NSMAF,INTS7,OXSR1,SPATA5,WTAP,SENP2,SBNO1,HIPK1,QRICH1,LIMS1,TMEM245,NOP14,TRAPPC10,LATS2,RRM1,MID2,SYNJ2,BNIP2,DDX46,PALB2,CLTC,CREBRF,NAA35,ARID4B,NCOA1,SON,VKORC1L1,PIK3C3,TOR1AIP1,BIRC2,PTPRG,UIMC1,PTPN12,CEP20,NRP1,BBX,TAF1,KLHL7,DDI2,VIRMA,LYRM7,TTBK2,PPP4R3A,RNF146,TMEM181,SLC33A1,KDM1B,ZC3H8,HSD17B4,SF3B1,PWWP2A,ARID4A,CCT2,MIDEAS,C1orf131,CRBN,LDAH,MED13L,IMPACT,CDADC1,IGF2R,PDCL,ECPAS,ABCA1,MINDY2,PHC1,SPAG9,SNX4,HPS5,FAM160B1,NCAPD3,BIRC6,ACADM,PPM1A,POGLUT1,TRAF3,SWT1,ARL2BP,ATRX,BDP1,AKAP9,SRRD,FKBP14,CRAMP1,WWC2,MIA3,TMEM131L,AHNAK,PPWD1,NSD1,DDX52,ACTR6,CNOT4,ZNF79,CUL1,RFX7,MAP4K3,RDX,CCNC,CAMSAP1,SMCR8,QSER1,CHD4,STAU2,MEF2C,EDEM1,PTK2,NEDD1,DIAPH3,PBRM1,SRRM2,ZSWIM8,DIP2C,CAMK2D,APBB2,VPS13B,RAD21,MLLT10,YEATS2,PRRC2C,ACBD5,PHF3,AMOTL2,NOL8,LONP2,HDAC2,STRN,GOLIM4,N4BP2L2,PRIMPOL,TTC3,FLVCR1,KIDINS220,SELENOP,TMCO3,FBXO11,DDX6,GIT2,ARHGEF9,RNF38,CLSPN,BORA,MARK3,FBXL14,SUN1,MKRN2,KNTC1,UBE4B,MED12,TP53BP2,NDST1,ATR,POM121,BRPF3,TAB2,DARS1,EIF3A,POC1B,RNF138,MARCHF7,OSBPL8,DDX5,TTF1,RLIM,KDM2A,DCAF7,UBA6,FASTKD2,CNST,EIF4G2,FAM133B,CD46,CDK13,CDC23,HOOK3,TMED8,TYW3,SLC6A6,BACH1,GOLM2,KMT2E,TLK1,SLC35B4,ZFP30,ARFGEF1,NOTCH2,ZMYM3,TRAPPC6B,SMARCAD1,ARCN1,FYCO1,CEP135,HMGCR,SRPK1,TMEM87B,USP4,APPL2,WDR11,UHRF1BP1L,HACD3,TRMT61B,KHNYN,KPNA5,MBNL1,MPPE1,BMP2K,MTHFD2,BZW1,HECTD1,STIM2,FOXK1,PKN2,TASOR,SASH1,ARIH1,PUM1,KANSL1L,FNDC3A,SEC24B,FOXN2,ZFAND5,CTNNB1,FUBP1,SERPINB8,SP4,PKD2,CEP57,SRRM1,FBXO21,TP53BP1,VPS37A,COPS4,WDR48,STRBP,COMMD10,TPR,MOB1B,G3BP1,GIGYF2,USP34,FERMT2,ANKIB1,RPS6KA3,WDR19,CCNI,TWF1,IPO5,ASXL2,CDKN1B,USP47,POLR2B,LGR4,FRYL,GXYLT1,LZTFL1,CEP350,LMBR1,HSPG2,TPM4,BTBD3,ASH1L,PTPRC,RAB18,SLC10A7,ATP2B4,GNPTAB,MED13,GALK2,WDR7,EP400,FBXW7,SMG6,LTN1,WDR20,SKI,SLC39A14,AKAP10,PRKAA1,MEF2A,MYO18A,LRIG2,TUBGCP3,LARP7,GOSR1,AKAP13,CRY1,PHF20L1,ELF1,OSBPL1A,MIEF1,VRK2,PLAA,TRIM33,SAMD9L,PIP5K1A,TBCK,HEATR5A,CANX,TEX10,PURB,DOCK1,CCNK,NEMF,GRSF1,TAPT1,DFFA,PEX13,NF1,DSTYK,EML4,TMEM170A,MAPK8,LPIN2,HMGCS1,SLC11A2,NCBP3,CEP85,FAM214A,DNAJC10,MCMBP,TSR1,PNPT1,SCAMP1,SLC4A7,KMT5B,TCAIM,DBR1,CDV3,ERBIN,NBR1,ELF2,RIC1,CCAR1,RAPGEF2,FBXO38,PTPN4,NSL1,IREB2,NSUN3,SART3,FAM219B,USP12,ATF2,UBA5,NCOA2,UNKL,SNAP23,PRKDC,BCL2L2,PRR14L,ROCK1,CNIH1,FAM168A,METAP1,ELL2,LARP4,DESI2,EXOC6,DDR2,CPEB2,ADO,SLF1,CHURC1,SLC38A9,HIP1,OSBPL9,NBPF12,CTPS2,LRRC8C,CCNG1,PPARA,MOSMO,RABGAP1,SNX2,PPP2R5C,PPIG,EIF3L,EIF2S3,EMSY,SEC62,G2E3,TMOD3,CPNE8,IDS,ZNF330,RTF1,DYRK1A,CARM1,MRTFB,USPL1,USP8,DPY19L4,VCAN,CDC37L1,AGO2,CASP3,UTP23,STK4,INPP4A,MSL1,ZNF91,LANCL1,BAZ1A,ATL3,GNPNAT1,CEP170,NT5C2,QTRT2,TACC1,SNX6,CEP104,SMAD4,ZMYM5,SCYL2,ZNF84,AGTPBP1,TSC1,POLR2A,PEX1,KCTD3,ANKFY1,PDE8A,TLE4,FGD6,UBR7,DNAJC11,METTL15,ATRN,CTNND1,SLC25A36,PARG,ATP2A2,UHRF2,ANKRD50,INTS2,TNIK,M6PR,PMS2,ABCB7,APAF1,PCNX1,DMXL2,EIF2A,UBR4,GCN1,SLF2,POLR3A,SLMAP,CLCN3,SESTD1,UBR2,FBXW11,BPTF,GTPBP10,PTCD2,BCLAF1,ABCC5,CLCC1,SKIL,CARD8,INO80,FTO,LRRC58,NAV2,FAN1,INTS12,ARPIN,IFI16,NIPA2,DYNC1LI2,TNKS,KIF14,NAMPT,CERT1,POLR3E,SENP6,KDM6A,SF3A1,SNX1,COG6,DDB1,BCL9L,HACD2,RSRC1,TAF1B,KLHDC2,SERINC3,DOCK9,SS18,TBC1D23,PARD3,CENPJ,SPTLC1,RO60,MAPK9,NIBAN1,CYFIP1,DENND5A,DPY19L3,SCAF4,GSE1,PIAS3,AFAP1,MCFD2,NDUFS1,SLC39A6,YTHDC2,WDR75,FNIP1,PCID2,ARID1A,MARCHF6,UPRT,N4BP2,ATM,GNL3L,LRBA,POLR1B,NXPE3,MFSD14B,STRN3,KAT6B,EIF4G1,C11orf58,FCHO2,STX2,PBX1,FUT10,ANKRD28,HEATR6,PCYOX1,ELP4,UBXN2B,PEAK1,TCERG1,NECAP1,SNX19,MIER1,WWP1,ARFIP1,PAK2,ZEB2,COPA,CYLD,TMEM87A,BTBD10,APPBP2,ETFDH,SEC23A,MKLN1,CDK5RAP2,CCDC14,SUGP2,ARSK,TIMM23B,SMAD1,POGK,MYCBP2,NVL,SNRNP200,PARP14,SPPL2A,HSPA9,NNT,ENTPD1,CRLF3,MSH6,SEC63,TCAF1,NUP107,ERCC6L2,GNPDA2,ZSWIM6,PACRGL,KAT7,R3HCC1L,FANCL,TMEM123,DCP1A,MYLIP,TRAPPC13,NUP188,CNOT6L,PPFIBP1,NAA50,HUWE1,KIF3A,TEP1,CALU,YME1L1,FARP1,BCL2L11,FAM13B,INTS8,EPM2AIP1,RAB12,MBIP,DPP8,SUCO,EFL1,ATF1,AHR,LATS1,TAF1A,RAP1GDS1,LRP6,PPP1R15B,SMYD4,FAM53C,LPIN1,SFMBT2,TRAPPC11,POGLUT3,PIBF1,REV1,FCHSD2,TOM1L1,KIFBP,TRMT13,MLH3,UBXN7,MAGI3,ITGB1,NLN,TUT4,STARD4,GIN1,MCL1,ZFP1,RUFY2,THAP2,USP33,ANKRD27,MAPK14,MSANTD2,TUBGCP4,USP32,WBP11,TTC28,PIAS1,SLC25A24,DNMT1,RIOK2,SLC7A1,UBE3C,PAN3,INSIG2,DDX3X,SLC25A15,NIPBL,BAZ2A,IMPA1,UBE2V2,FUT8,MYOF,MALT1,MFSD8,CRK,NFX1,FAM161A,GAPVD1,DENND4A,C16orf70,BPNT2,RAP1B,USP46,CENPE,CDK8,CLK4,GNL3,INVS,PHF12,KIAA0232,CCNT2,DNAJC24,ST13,CEP78,KHDC4,TRIP12,SRPK2,AKT3,GRPEL2,MORC3,NDFIP2,TTC37,PPP3CB,CHD6,SLC25A30,DOCK10,MED21,ANAPC10,THOC2,PPM1B,SUV39H2,HAUS2,TMX3,MPRIP,NCOR1,KRR1,NFYB,PGM2,TRAF3IP1,PCF11,MBP,C18orf25,PSMC6,CEBPZ,HERC2,EIF4G3,PPID,PUS7,STX17,SEPTIN10,SECISBP2L,ACTR3,RAB3GAP1,MED14,MTAP,SLC37A3,ADAM10,XPC,ARHGAP21,VPS26A,RAB5A,MAP3K2,DNAJC14,PHACTR2,CDKN2AIP,METTL4,ITPRIPL2,ZC3H11A,FKTN,WASF2,CUL4B,KTN1,MR1,SET,SGMS1,SNRK,ARIH2,SEPTIN11,UBXN2A,ARNT,ISCA1,RSRC2,XPO1,SMC3,DOCK8,URB1,SSR1,ROCK2,CCDC88A,ZBED6,RBM5,UEVLD,CKAP2L,MTMR1,CEP97,HSPA14,SEC23IP,SREK1,RFC3,RBM41,PPP3R1,PPP4R2,TMTC3,SOCS7,TMLHE,SLC31A1,KPNA3,CCNYL1,MAP4K4,LYSMD3,ASAP1,NID2,ANKRD26,MGAT4A,MTHFD1,DENND6A,ANTXR2,KDM2B,SOS2,SLC30A5,TSC22D2,BACE1,IL6ST,LARS1,AFF1,WDR44,CHM,FYTTD1,ERCC4,KIF15,LAMB1,HECTD4,IPO7,MAGT1,ELP2,ECD,CPSF2,SETD2,STX6,SPG11,RALGAPA1,IBTK,FER,PALLD,EXOC5,AEBP2,BOD1L1,RNF4,EPB41,SPIRE1,NUP50,HBS1L,CCDC93,CAPN7,CNTRL,IVNS1ABP,EPB41L5,LZIC,CCDC47,ARHGEF7,BTBD7,PLK4,TGFBR1,IQGAP1,SMARCA2,CMTR2,UTP15,ARHGAP5,MPDZ,MCC,MFSD14A,TJP1,RBBP5,COPB2,SEC14L1,VPS54,SETD5,C2CD5,ARSB,MTMR9,SPRY4,PCM1,PDLIM5,VEZT,DDX50,UGGT2,UBXN4,SWAP70,SIK3,ABHD5,FAM120B,TMEM39A,NCOA3,SYNJ1,SBF2,GTF3C4,ERC1,PAIP2,RHOT1,DTWD1,MTX3,CSNK1G3,HEATR5B,DENND5B,DCP2,FAM20B,TDRD7,UNC119B,TMEM184C,PPFIA1,IPP,CDC14A,EVC,TMEM135,SLC30A7,DLG1,GLUL,GCFC2,TAB3,MPHOSPH9,SPICE1,PREPL,ERGIC2,RPRD2,TMED5,HEATR1,ZFP14,RBM15,SAV1,AP5M1,SENP7,RBBP6,SMARCC2,THOC1,PPP1R12A,ZCCHC9,KIAA1109,TBC1D15,ATAD2,PHTF1,SMG1,CREBBP,LGALS8,RABGAP1L,TRAK1,DDX17,ELOA,POLH,SRP72,TIPRL,L2HGDH,RDH11,RCOR3,CSPP1,TRAK2,ARID1B,TMEM33,SH3BP5,ABRAXAS1,GTF2H3,CAAP1,SMARCC1,MAT2A,RNF31,ZC3H12C,DDX59,ATG5,NGLY1,BRD3,CEP192,JKAMP,TXNRD1,SLTM,MTMR12,RNF13,RB1CC1,KLF13,CLPX,PANK1,ZCCHC7,FBXW8,SRFBP1,PLEKHA2,SGPL1,XIAP,MDC1,BBS7,IPO8,SLC35A3,YAP1,SAMD8,FOXN3,PPP2R5E,UVRAG,CPSF7,NCOA4,FBH1,MTRR,GAB1,FAM126B,ACTR2,PLSCR4,VAMP7,RBM7,GPATCH8,CNOT8,TUT7,NEK1,IPO9,GID4,CLASP1,CUL2,GON4L,SMG8,CAB39,SLCO2B1,ATG4C,KCTD20,RB1,ZZEF1,NSRP1,DCAF5,NOTCH1,LIN52,MASTL,EDRF1,FBXO3,PTAR1,RABEP1,MED23,FNDC3B,NDE1,KLHL23,HDGFL3,BCKDHB,DOP1A,NOMO2,LEO1,RAPGEF1,TBC1D14,PARP1,DHTKD1,PDIA6,CNBP,ATG2B,MOB4,SLC30A6,VPS4B,NEPRO,PNN,UCHL5,FOXJ3,EHBP1,LARP1,TAF4B,ARHGEF11,SLAIN2,C9orf85,PARP8,SFT2D2,CPOX,PARPBP,CWF19L2,EXOC7,TIFA,ANAPC1,MON2,ZFC3H1,RYK,DIXDC1,PPIP5K2,ANP32E,ZNF10,NCBP1,DHX38,TMPO,PRMT5,SRP54,BRD2,AFF4,CASK,VANGL1,PHF8,EP300,CYRIB,BLZF1,DDX31,ACVR1,TMEM263,ZCCHC2,CD164,HAUS3,DNAJC13,METTL6,LIG3,NPTN,TMEM131,DYRK2,RSBN1L,DHX33,CEMIP2,ADNP2,FAM149B1,B3GALNT2,NUP98,KIAA0586,DDX60,PSMD5,DTD2,CHD9,UBE2G1,SOS1,SLC12A6,ZEB1,STRIP1,ATP8A1,WAC,MOSPD2,RPE,TAF2,CAST,CPSF6,DMTF1,ATP6V1C1,PAFAH1B1,C2orf49,CELF1,TWSG1,CTDSP2,OAS3,CIP2A,SDAD1,TAF5L,USP37,CAMSAP2,CTR9,ITSN1,TET2,SH3PXD2A,ZNF839,DCAF10,DNAJC16,UBR1,NOP9,CHD8,TAOK3,CEP83,KIAA0100,PRDM2,IARS1,CUL4A,NAA30,CCDC66,TTC26,UBE4A,CCDC126,GDI2,FAT1,MTMR4,MED28,INTS3,SGTB,NR1D2,ABHD17B,VGLL4,NAPEPLD,CEP63,MARF1,UBN2,SPRED2,KDM5B,FGFR1OP2,ETFA,RORA,USP28,KLHL8,HEG1,UBE2D3,TTC17,OTUD4,DOCK7,GLS,CLIP1,RFFL,RAD50,PPIL4,API5,RAB2B,RC3H2,UBE3B,CCSER2,POT1,PRKAR2A,BRCC3,NUP54,C1orf109,SVIL,ZUP1,RBM43,TGFBRAP1,UHRF1BP1,WNK1,MBNL2,EPS15,RUFY3,DTWD2,TIRAP,RBM48,LRCH3,LIFR,GFM2,AQR,PAXIP1,LRRK1,GALC,STAT1,REST,LARS2,YTHDF3,RANBP2,SPART,TRMT11,PLRG1,ABHD16A,GCLC,PAXBP1,SNX18,TECPR2,ABCD3,UFM1,RAD54L2,CCDC186,SMC6,GANC,ATP2B1,DHX36,TANK,RWDD4,NRDC,TNS3,VPS26C,SNX13,LRRFIP1,ZFYVE16,PPP6R3,ZMYND11,RALGAPB,CCNG2,ELOVL5,ANKRD46,NRBF2,NSD3,INTS6,PTPN11,MCM3AP,AGO4,ZNF17,SGO2,NR2C2,C11orf54,DIP2A,AP1AR,COA7,OTUD6B,FRMD6,KRIT1,ADD3,CSDE1,GART,RIOX2,OSBP,CDYL,THAP9,SOCS6,CDC42SE2,ZNF720,ITGAV,PLEKHA5,CCP110,CIPC,GSTCD,STRAP,CRKL,POLD3,CAT,EML1,RFX5,STK24,FPGT,GTDC1,MYO5C,GPALPP1,MDN1,NCAPG2,GPATCH11,HELQ,THAP6,EIF3J,PIGB,ZFP91,DNAJB14,SEPSECS,ROBO1,SCARB2,SEPTIN8,CDC40,KBTBD4,ZC3H15,ZNF106,RASA1,PTPN9,PUM2,SZT2,PHC3,WIPF1,ANKRD12,OPA1,LIN54,FBN1,PIGN,GOLGA4,TNPO1,TBL1XR1,PGM3,NEK7,SEC22C,CYB5R4,SEC31A,MAP3K4,DEK,RTTN,RAD17,KIAA0753,BCOR,SYNRG,ZC3HAV1L,TPP2,EIF2AK4,CALCOCO2,TRNT1,POGZ,EPC1,UBE2W,SUPT20H
Exist in public source
AGPAT5

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000126005ENST00000424358exon_skip_99856chr13:39042104-39042305-13.17-0.1107NHLRC3ENST00000379600In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000126005ENST00000424358exon_skip_291980chr17:59119318-59119495-14.76-0.1054SKA2ENST00000330137In-frame
ENSG00000126005ENST00000424358exon_skip_291984chr17:59119318-59119495-14.76-0.1054SKA2ENST00000330137In-frame
ENSG00000126005ENST00000456790exon_skip_358606chr20:63202286-63203807-70.68-0.1013YTHDF1ENST00000370339In-frame
ENSG00000126005ENST00000456790exon_skip_360302chr21:42896926-42897047-18.25-0.1629NDUFV3ENST00000340344Frame-shift
ENSG00000126005ENST00000456790exon_skip_106783chr14:55673171-55673255-9.73-0.1520KTN1ENST00000395314In-frame
ENSG00000126005ENST00000456790exon_skip_300022chr18:79919183-79919400-30.41-0.1421PQLC1ENST00000397778Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for MMP24-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types
ENSG00000126005ENSG00000167967E4F1ENSG00000163463KRTCAP27CHOL,KIRP,MESO,PAAD,PRAD,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000125817CENPB6CHOL,KICH,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000090273NUDC5CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000090273NUDC5DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000099817POLR2E10BRCA,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000277791PSMB35CHOL,KIRP,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000130313PGLS8CHOL,KIRP,LAML,MESO,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000130313PGLS6CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125898FAM110A5KIRP,LAML,LUAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000177225GATD15CHOL,KICH,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000175467SART15CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000102103PQBP19CHOL,LAML,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000107874CUEDC25CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000175221MED169CHOL,LAML,LUAD,MESO,PAAD,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000175221MED165CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000198746GPATCH36CHOL,LAML,MESO,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000198746GPATCH36CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000130811EIF3G5CHOL,LAML,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000130811EIF3G5CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000167118URM15CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000167118URM15CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000204315FKBPL5CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000104872PIH1D15CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000104872PIH1D16CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000111775COX6A15PAAD,PCPG,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000160993ALKBH45CHOL,KIRP,PAAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000160993ALKBH46CHOL,DLBC,KICH,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000183828NUDT148BRCA,CHOL,LAML,MESO,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000114383TUSC26CHOL,KIRP,LAML,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000114383TUSC25CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000116691MIIP9KIRP,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000173264GPR1375CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000173264GPR1375CHOL,DLBC,KICH,KIRP,PAAD
ENSG00000126005ENSG00000180035ZNF48ENSG00000177370TIMM225CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000214078CPNE15CHOL,KIRP,LAML,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000101363MANBAL6CHOL,KIRP,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000147123NDUFB118BRCA,CHOL,LAML,MESO,PAAD,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000138621PPCDC7CHOL,KIRP,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125458NT5C12BRCA,CHOL,KIRP,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000167930FAM234A9BRCA,CHOL,KIRP,LUAD,MESO,PAAD,PRAD,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000167930FAM234A7CHOL,DLBC,KICH,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000089693MLF25LAML,MESO,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000241370RPP216CHOL,KIRP,PAAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000084072PPIE5CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000103502CDIPT9CHOL,KIRP,LAML,LUAD,MESO,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000103502CDIPT6CHOL,KICH,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000106246PTCD15CHOL,KIRP,PAAD,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000106246PTCD15CHOL,KICH,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000124074ENKD18CHOL,KIRP,LAML,LUAD,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000103145HCFC1R111BRCA,CHOL,KIRP,LAML,LUAD,MESO,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000103145HCFC1R15CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000126934MAP2K210CHOL,KIRP,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000126934MAP2K25CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000179271GADD45GIP19CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000126247CAPNS18CHOL,KIRP,LAML,MESO,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000105701FKBP811CHOL,KIRP,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000105701FKBP86CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000102125TAZ6KIRP,LAML,LUAD,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000161179YDJC10CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000141349G6PC36CHOL,KIRP,LAML,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000095059DHPS5CHOL,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000095059DHPS5CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125656CLPP8BRCA,CHOL,LAML,MESO,PAAD,PRAD,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000125656CLPP5CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000125835SNRPB5CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000166925TSC22D45CHOL,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000162191UBXN15CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000162191UBXN15CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000116857TMEM95CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000142546NOSIP8CHOL,KIRP,LAML,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000142546NOSIP6CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000176946THAP45CHOL,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000176946THAP46CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000104731KLHDC46CHOL,KIRP,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000103415HMOX26BRCA,CHOL,LAML,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000167671UBXN67CHOL,MESO,PAAD,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000167671UBXN65CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000110711AIP5KIRP,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000182872RBM105CHOL,PAAD,PCPG,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000197858GPAA15CHOL,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000099804CDC346CHOL,KIRP,LAML,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000099804CDC346CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000140939NOL38BRCA,CHOL,KIRP,LUAD,MESO,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000185262UBALD26CHOL,KIRP,LAML,MESO,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000213339QTRT17CHOL,KIRP,LUAD,MESO,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000135441BLOC1S19BRCA,CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000126254RBM429CHOL,KIRP,LAML,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000126254RBM426CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000163156SCNM15CHOL,KIRP,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000131652THOC611BRCA,CHOL,KIRP,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000130770ATP5IF18BRCA,KIRP,LUAD,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000101940WDR1310CHOL,KIRP,LAML,LUAD,MESO,PAAD,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000101940WDR136CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000077312SNRPA8CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000130810PPAN5CHOL,MESO,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000105393BABAM17CHOL,KIRP,LAML,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000105393BABAM15CHOL,DLBC,KIRP,PAAD,PRAD
ENSG00000126005ENSG00000167967E4F1ENSG00000102890ELMO35CHOL,KIRP,LAML,PRAD,READ
ENSG00000126005ENSG00000167967E4F1ENSG00000176476SGF299CHOL,KIRP,LAML,LUAD,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000176476SGF295CHOL,DLBC,KIRP,PAAD,PRAD
ENSG00000126005ENSG00000167967E4F1ENSG00000153406NMRAL112BRCA,CHOL,KIRP,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000105364MRPL45CHOL,DLBC,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000172009THOP15KIRP,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000067221STOML16CHOL,KIRP,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000167468GPX49BRCA,LAML,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000167468GPX45CHOL,KICH,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000105568PPP2R1A6CHOL,LAML,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000105568PPP2R1A6CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000169189NSMCE15CHOL,KIRP,MESO,PRAD,SKCM
ENSG00000126005ENSG00000180035ZNF48ENSG00000169189NSMCE15CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000141858SAMD16CHOL,KIRP,LUAD,PAAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000141858SAMD15CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000105373NOP536CHOL,LAML,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125877ITPA6CHOL,KIRP,LAML,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000131188PRR75CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000126768TIMM17B9BRCA,CHOL,KIRP,LAML,MESO,PAAD,PRAD,READ,SKCM
ENSG00000126005ENSG00000180035ZNF48ENSG00000126768TIMM17B5CHOL,DLBC,KIRP,PAAD,PRAD
ENSG00000126005ENSG00000180035ZNF48ENSG00000132004FBXW95CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000160948VPS286CHOL,KIRP,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000188186LAMTOR47BRCA,CHOL,KIRP,LAML,PAAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000099330OCEL18BRCA,KIRP,LUAD,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000174915PTDSS25CHOL,KIRP,PAAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000174915PTDSS25CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000182173TSEN547CHOL,KIRP,MESO,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000182173TSEN546CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000176340COX8A5BRCA,CHOL,LAML,PAAD,SKCM
ENSG00000126005ENSG00000167967E4F1ENSG00000176182MYPOP9CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000176182MYPOP5CHOL,KICH,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000100083GGA16CHOL,KIRP,LAML,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000100083GGA15CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000104957CCDC1307CHOL,KIRP,LAML,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000167969ECI17BRCA,KIRP,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000225663MCRIP110BRCA,CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000225663MCRIP16CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000149761NUDT225BRCA,CHOL,LAML,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125534PPDPF11BRCA,CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000242372EIF67CHOL,LAML,MESO,PAAD,PCPG,PRAD,READ
ENSG00000126005ENSG00000180035ZNF48ENSG00000242372EIF65CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125967NECAB38CHOL,KIRP,LAML,LUAD,MESO,PAAD,PRAD,READ
ENSG00000126005ENSG00000167967E4F1ENSG00000099849RASSF76CHOL,KIRP,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000101220C20orf275CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000213337ANKRD396CHOL,PAAD,PCPG,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000116586LAMTOR28BRCA,CHOL,KIRP,MESO,PCPG,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000099821POLRMT6CHOL,KIRP,LAML,PAAD,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000099821POLRMT6CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000106077ABHD116CHOL,KIRP,PAAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000111671SPSB27CHOL,KIRP,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000111671SPSB25CHOL,KICH,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000204237OXLD111CHOL,KIRP,LAML,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000204237OXLD16CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000130165ELOF19CHOL,KIRP,LAML,MESO,PAAD,PCPG,PRAD,SKCM,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000130165ELOF16CHOL,DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000105552BCAT26CHOL,LUAD,MESO,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000159239RP11-523H20.57CHOL,KIRP,MESO,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000159239RP11-523H20.55CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000105327BBC35CHOL,KIRP,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000146540C7orf505BRCA,CHOL,KIRP,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000146540C7orf505CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000177595PIDD15CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000027847B4GALT75CHOL,DLBC,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000130748TMEM16010BRCA,CHOL,KIRP,LAML,MESO,PAAD,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000110011DNAJC47CHOL,KIRP,LAML,PAAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000002330BAD6BRCA,CHOL,KIRP,LAML,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000170906NDUFA39CHOL,KIRP,MESO,PAAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000188486H2AX6CHOL,MESO,PAAD,PCPG,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000185298CCDC1375CHOL,KIRP,LAML,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000185298CCDC1375CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000173581CCDC1067KIRP,LAML,LUAD,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000173581CCDC1065DLBC,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000101246ARFRP19BRCA,CHOL,KIRP,MESO,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000180035ZNF48ENSG00000101246ARFRP15CHOL,DLBC,KIRP,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000118162KPTN5CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000168653NDUFS55CHOL,KIRP,MESO,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000102878HSF46CHOL,KIRP,LAML,LUAD,PAAD,PCPG
ENSG00000126005ENSG00000167967E4F1ENSG00000100983GSS6CHOL,KIRP,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000204348DXO5CHOL,LAML,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000173113TRMT1125BRCA,CHOL,KIRP,PAAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000116685KIAA20135LAML,MESO,PAAD,PRAD,THCA

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types
ENSG00000126005ENSG00000167967E4F1ENSG00000141367CLTC5KIRP,LAML,MESO,PCPG,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000170832USP325KIRP,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000117500TMED55CHOL,KIRP,LAML,PCPG,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000125686MED16LAML,MESO,PAAD,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000174780SRP725KIRP,LAML,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000171150SOCS56LUAD,PAAD,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000107651SEC23IP5KIRP,LAML,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000182827ACBD35LAML,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000176542USF35KIRP,LAML,PRAD,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000145833DDX465LAML,MESO,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000120690ELF16LAML,LUAD,MESO,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000134255CEPT15KIRP,LAML,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000143337TOR1AIP17KIRP,LAML,LUAD,PAAD,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000009307CSDE16KIRP,LAML,PAAD,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000115464USP347KIRP,MESO,PAAD,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000145391SETD75KIRP,MESO,PAAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000170365SMAD17KIRP,MESO,PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000169018FEM1B5LAML,LUAD,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000160218TRAPPC105KIRP,MESO,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000138592USP87KIRP,LAML,LUAD,MESO,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000085491SLC25A246KIRP,LUAD,MESO,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000139687RB16LAML,LUAD,MESO,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000136628EPRS15KIRP,LAML,MESO,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000138081FBXO116BRCA,LAML,MESO,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000186063AIDA5LAML,PAAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000111647UHRF1BP1L7KIRP,LUAD,MESO,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000180370PAK26LUAD,PCPG,PRAD,READ,SKCM,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000159658EFCAB145KIRP,LAML,PCPG,PRAD,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000144909OSBPL115PAAD,PCPG,PRAD,READ,THCA
ENSG00000126005ENSG00000167967E4F1ENSG00000120063GNA136LUAD,MESO,PAAD,PRAD,SKCM,THCA

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000126005.14ENST00000566203.5100935633
ENSG00000126005.14ENST00000433764.476686913
ENSG00000126005.14ENST00000438751.464297491
ENSG00000126005.14ENST00000454184.477574341
ENSG00000126005.14ENST00000456350.474303527
ENSG00000126005.14ENST00000453892.171414199
ENSG00000126005.14ENST00000455178.141297419
ENSG00000126005.14ENST00000435366.2772311
ENSG00000126005.14ENST00000424358.119462646
ENSG00000126005.14ENST00000456790.1167127630