Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000116883

Summary for RP11-268J15.5

Gene summary

Gene information	Ensembl ID	ENSG00000116883
	Gene symbol	RP11-268J15.5
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP11-268J15.5

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000116883	1.215349e+02	2.212337e+00	3.857544e-01	5.735094e+00	9.750000e-09	9.180000e-08	UP	CHOL
ENSG00000116883	2.491085e+02	1.349190e+00	1.615111e-01	8.353540e+00	6.620000e-17	3.330000e-16	UP	KIRC
ENSG00000116883	1.557845e+02	1.319394e+00	2.579881e-01	5.114165e+00	3.150000e-07	3.170000e-06	UP	BLCA
ENSG00000116883	1.652486e+02	1.368332e+00	1.878446e-01	7.284381e+00	3.230000e-13	3.410000e-12	UP	HNSC
ENSG00000116883	1.165310e+02	1.531381e+00	2.106130e-01	7.271065e+00	3.570000e-13	2.710000e-12	UP	COAD
ENSG00000116883	1.360564e+02	1.615634e+00	4.040522e-01	3.998577e+00	6.370000e-05	5.072650e-04	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000116883	3.897608e-01	8.130737e-03	CHOL	9.810545e-03

Top

lncRNA-Protein interaction for RP11-268J15.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000185658	BRWD1	59.16	97.6783	Q9NSI6	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000104885	DOT1L	49.94	96.7933	Q8TEK3	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000147130	ZMYM3	49.86	94.7273	Q14202	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000143442	POGZ	47.69	93.2579	Q7Z3K3	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000182979	MTA1	38.37	93.7145	Q13330	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000010803	SCMH1	36.39	92.0746	Q96GD3	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000272333	KMT2B	32.77	94.8379	Q9UMN6	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000112511	PHF1	5.07	94.8441	O43189	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000275023	MLLT6	70.6	96.3683	P55198	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000162601	MYSM1	66.61	93.7971	Q5VVJ2	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000108557	RAI1	56.17	97.2332	Q7Z5J4	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000197114	ZGPAT	51.41	93.7941	Q8N5A5	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000204227	RING1	35.31	93.9766	Q06587	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000116560	SFPQ	33.72	94.3331	P23246	RBP,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000277258	PCGF2	29.06	91.9336	P35227	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000171456	ASXL1	28.65	97.0213	Q8IXJ9	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000168395	ING5	20.04	92.7851	Q8WYH8	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000066136	NFYC	18.73	94.6308	Q13952	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000178028	DMAP1	17.08	93.3753	Q9NPF5	Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000119760	SUPT7L	3.11	92.8263	O94864	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000162601	MYSM1	66.61	94.0375	Q5VVJ2	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000099326	MZF1	62.34	95.4522	P28698	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000167967	E4F1	59.58	95.7795	Q66K89	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000130254	SAFB2	57.68	97.1575	Q14151	TF,RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000105127	AKAP8	51.48	96.9133	O43823	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000197114	ZGPAT	51.41	94.6333	Q8N5A5	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000104885	DOT1L	49.94	96.9116	Q8TEK3	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000132005	RFX1	45.25	92.361	P22670	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000117000	RLF	40.61	97.508	Q13129	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000010803	SCMH1	36.39	92.2524	Q96GD3	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000147789	ZNF7	35.1	95.9252	P17097	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000272333	KMT2B	32.77	94.9743	Q9UMN6	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000198040	ZNF84	31.94	96.3184	P51523	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000277258	PCGF2	29.06	92.2442	P35227	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000065029	ZNF76	27.18	95.406	P36508	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000166432	ZMAT1	24.76	92.4909	Q5H9K5	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000126705	AHDC1	24.68	95.6649	Q5TGY3	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000256223	ZNF10	20.99	95.8128	P21506	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000066136	NFYC	18.73	94.8236	Q13952	TF,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000196378	ZNF34	12.73	96.2133	Q8IZ26	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000102878	HSF4	12.43	92.0164	Q9ULV5	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000167766	ZNF83	11.29	95.056	P51522	TF	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000112511	PHF1	5.07	95.0912	O43189	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000163728	TTC14	65.94	93.6759	Q96N46	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000130254	SAFB2	57.68	96.9861	Q14151	TF,RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000004534	RBM6	55.84	96.9286	P78332	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000084072	PPIE	49.07	91.8794	Q9UNP9	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000100650	SRSF5	47.88	94.7892	Q13243	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000173914	RBM4B	41.88	91.813	Q9BQ04	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000124193	SRSF6	37.03	95.7178	Q13247	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000099622	CIRBP	35.43	92.9968	Q14011	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000116560	SFPQ	33.72	94.3351	P23246	RBP,Epi	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000129351	ILF3	28.93	94.1564	Q12906	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000133226	SRRM1	28.83	97.6979	Q8IYB3	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000116350	SRSF4	24.27	95.4714	Q08170	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000184863	RBM33	20.75	96.0067	Q96EV2	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000167978	SRRM2	16.87	98.4597	Q9UQ35	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000179151	EDC3	15.96	94.5081	Q96F86	RBP	NA
ENSG00000116883	ENST00000373137	RP11-268J15.5	ENSG00000161547	SRSF2	6.87	94.606	Q01130	RBP	NA

Top

lncRNA-DNA interaction for RP11-268J15.5

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP11-268J15.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000116883	ENST00000373137	exon_skip_111863	chr14:23565815-23565892	-13.75	-0.2292	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_370518	chr22:50247691-50247776	-14.98	-0.2539	HDAC10	ENST00000216271	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_382458	chr3:38131595-38131638	-8.53	-0.2941	ACAA1	ENST00000333167	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_38175	chr1:234398381-234398553	-14.66	-0.1004	TARBP1	ENST00000040877	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_127618	chr15:58890280-58890461	-16.47	-0.2139	SLTM	ENST00000380516	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_290158	chr17:42953723-42953778	-8.52	-0.2582	AARSD1	ENST00000427569	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_374497	chr3:49999439-49999513	-13.23	-0.2321	RBM6	ENST00000266022	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_380242	chr3:186784961-186785101	-13.82	-0.1280	EIF4A2	ENST00000323963	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_444499	chr5:138164086-138164133	-8.02	-0.3819	BRD8	ENST00000254900	Frame-shift
ENSG00000116883	ENST00000373137	exon_skip_470226	chr7:103307595-103307708	-11.91	-0.1385	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36324450-36324548	188.00	-85.20	97	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36324648-36324735	186.00	-85.69	78	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36324071-36324165	169.00	-98.92	90	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36323984-36324063	166.00	-70.92	84	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36324788-36324887	155.00	-85.12	96	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36325316-36325391	154.00	-79.37	77	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36325034-36325115	143.00	-81.67	88	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36324708-36324790	142.00	-94.59	59	NA
ENSG00000116883	hsa-mir-152	ENST00000373137	chr1:36323735-36323788	141.00	-79.72	57	NA

Top

Variants for RP11-268J15.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_3065	ENSG00000116883.8	chr1	36325751	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3085	ENSG00000116883.8	chr1	36328507	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3092	ENSG00000116883.8	chr1	36328556	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3107	ENSG00000116883.8	chr1	36328638	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3113	ENSG00000116883.8	chr1	36328673	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3114	ENSG00000116883.8	chr1	36328674	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3117	ENSG00000116883.8	chr1	36328697	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001
LncEditing_3120	ENSG00000116883.8	chr1	36328711	+	antisense	RP11-268J15.5	ENST00000373137.2	antisense	RP11-268J15.5-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000116883	LncEditing_3085	UCS	chr1_36328507_+	7.591462e+00	3.596398e+00	9.277944e-01	2.786343e+00	5.330647e-03	8.028083e-03	UP
ENSG00000116883	LncEditing_3107	UCS	chr1_36328638_+	6.291736e+00	2.986780e+00	9.303476e-01	4.086814e+00	4.373379e-05	2.447787e-04	UP
ENSG00000116883	LncEditing_3113	UCS	chr1_36328673_+	5.668951e+00	3.395912e+00	1.352662e+00	2.967834e+00	2.999059e-03	5.150127e-03	UP
ENSG00000116883	LncEditing_3114	UCS	chr1_36328674_+	6.611301e+00	3.500527e+00	1.090082e+00	2.955275e+00	3.123901e-03	5.300737e-03	UP
ENSG00000116883	LncEditing_3092	GBM	chr1_36328556_+	4.278100e+00	2.071629e+00	9.558363e-01	5.643228e+00	1.668909e-08	4.355315e-08	UP
ENSG00000116883	LncEditing_3117	GBM	chr1_36328697_+	3.832453e+00	2.212427e+00	1.261609e+00	3.908740e+00	9.277869e-05	1.300831e-04	UP
ENSG00000116883	LncEditing_3120	GBM	chr1_36328711_+	4.590242e+00	1.984016e+00	8.263463e-01	5.934561e+00	2.946333e-09	9.203024e-09	UP
ENSG00000116883	LncEditing_3113	MESO	chr1_36328673_+	3.638036e+00	2.014688e+00	1.172878e+00	3.731286e+00	1.905048e-04	3.976308e-04	UP
ENSG00000116883	LncEditing_3107	UVM	chr1_36328638_+	9.405579e+00	5.235134e+00	1.183025e+00	4.210301e+00	2.550311e-05	7.410904e-05	UP
ENSG00000116883	LncEditing_3113	UVM	chr1_36328673_+	1.058083e+01	5.302816e+00	1.003390e+00	4.438719e+00	9.049588e-06	3.193212e-05	UP
ENSG00000116883	LncEditing_3114	UVM	chr1_36328674_+	1.091101e+01	6.747726e+00	1.442354e+00	2.261123e+00	2.375166e-02	2.539679e-02	UP
ENSG00000116883	LncEditing_3107	THCA	chr1_36328638_+	8.574922e+00	4.413748e+00	1.043711e+00	1.057580e+01	3.858513e-26	2.481633e-25	UP
ENSG00000116883	LncEditing_3113	THCA	chr1_36328673_+	7.888675e+00	4.682640e+00	1.328973e+00	8.216600e+00	2.093533e-16	5.921986e-16	UP
ENSG00000116883	LncEditing_3114	THCA	chr1_36328674_+	7.335829e+00	5.610796e+00	2.585618e+00	4.052117e+00	5.075616e-05	6.626499e-05	UP
ENSG00000116883	LncEditing_3107	OV	chr1_36328638_+	3.105921e+00	1.451086e+00	9.108394e-01	1.078029e+01	4.265448e-27	3.735313e-26	UP
ENSG00000116883	LncEditing_3113	OV	chr1_36328673_+	3.097523e+00	1.417316e+00	8.865610e-01	1.189271e+01	1.291446e-32	2.423439e-31	UP
ENSG00000116883	LncEditing_3114	OV	chr1_36328674_+	2.924492e+00	1.982223e+00	1.782318e+00	6.460061e+00	1.046611e-10	1.907549e-10	UP
ENSG00000116883	LncEditing_3085	TGCT	chr1_36328507_+	1.403125e+01	9.865803e+00	1.967982e+00	2.957827e+00	3.098155e-03	3.549427e-03	UP
ENSG00000116883	LncEditing_3107	TGCT	chr1_36328638_+	1.364234e+01	5.759742e+00	8.038485e-01	7.123647e+00	1.051081e-12	5.970721e-12	UP
ENSG00000116883	LncEditing_3113	TGCT	chr1_36328673_+	1.233487e+01	7.390715e+00	1.353260e+00	4.913584e+00	8.942619e-07	1.556396e-06	UP
ENSG00000116883	LncEditing_3114	TGCT	chr1_36328674_+	1.379358e+01	7.859088e+00	1.232190e+00	4.258090e+00	2.061807e-05	3.066469e-05	UP
ENSG00000116883	LncEditing_3113	PRAD	chr1_36328673_+	3.361780e+00	1.445697e+00	8.213818e-01	8.470207e+00	2.449571e-17	7.619454e-17	UP
ENSG00000116883	LncEditing_3120	BRCA	chr1_36328711_+	5.318719e+00	2.462727e+00	9.002343e-01	1.146784e+01	1.913839e-30	3.632796e-30	UP
ENSG00000116883	LncEditing_3113	PAAD	chr1_36328673_+	5.645784e+00	2.496439e+00	8.493995e-01	6.517315e+00	7.157706e-11	3.757796e-10	UP
ENSG00000116883	LncEditing_3114	PAAD	chr1_36328674_+	5.139249e+00	2.893874e+00	1.206920e+00	4.579947e+00	4.650944e-06	8.447119e-06	UP
ENSG00000116883	LncEditing_3120	ESCA	chr1_36328711_+	3.369182e+00	1.878690e+00	1.186702e+00	4.035886e+00	5.439669e-05	7.033650e-05	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000116883	LncEditing_3113	-4.671853e-01	4.372188e-02	4.872850e-02
ENSG00000116883	LncEditing_3114	-6.408595e-01	2.473629e-02	4.405737e-02
ENSG00000116883	LncEditing_3065	-4.362234e-01	3.075177e-03	4.906717e-03
ENSG00000116883	LncEditing_3113	-3.710549e-01	3.690312e-07	1.143424e-05
ENSG00000116883	LncEditing_3114	-3.544464e-01	6.545955e-04	1.519222e-03
ENSG00000116883	LncEditing_3107	-3.408795e-01	9.504474e-07	3.594419e-06
ENSG00000116883	LncEditing_3113	-3.977979e-01	1.724123e-09	2.109516e-08
ENSG00000116883	LncEditing_3114	-4.156472e-01	1.926988e-06	6.166362e-06
ENSG00000116883	LncEditing_3107	-5.917125e-01	9.129107e-05	1.460657e-03
ENSG00000116883	LncEditing_3113	-5.613945e-01	1.531778e-03	7.841235e-03
ENSG00000116883	LncEditing_3114	-3.817136e-01	1.021252e-03	4.328255e-03
ENSG00000116883	LncEditing_3107	-3.009195e-01	2.422136e-02	2.447106e-02
ENSG00000116883	LncEditing_3113	-4.410913e-01	8.370673e-05	2.278683e-04
ENSG00000116883	LncEditing_3065	-5.462256e-01	8.537633e-03	1.801401e-02
ENSG00000116883	LncEditing_3107	-4.088667e-01	1.180793e-03	6.374493e-03
ENSG00000116883	LncEditing_3114	-4.933834e-01	1.415029e-03	6.760988e-03
ENSG00000116883	LncEditing_3120	-4.881032e-01	4.683523e-02	4.779951e-02
ENSG00000116883	LncEditing_3107	-4.320526e-01	9.546365e-03	1.599661e-02
ENSG00000116883	LncEditing_3113	-5.761940e-01	8.071239e-05	1.000834e-03
ENSG00000116883	LncEditing_3114	-6.175426e-01	7.761045e-04	3.265404e-03
ENSG00000116883	LncEditing_3113	-3.385184e-01	1.147218e-02	1.171801e-02
ENSG00000116883	LncEditing_3113	-3.949423e-01	7.841082e-04	3.479480e-03
ENSG00000116883	LncEditing_3114	-4.129386e-01	3.190267e-03	7.076950e-03

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000116883.8	ENST00000373137.2	43	241	372

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential