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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000213923

Summary for CSNK1E

check button Gene summary

Gene informationEnsembl ID

ENSG00000213923

Gene symbol

CSNK1E

Gene namecasein kinase 1 epsilon
HGNC

2453

Entrez ID

1454

Gene typeprotein_coding
SynonymsCSNK1E|HCKIE|CKIE|CKIepsilon
UniProtAcc

P49674


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type
ENSG00000213923CSNK1EDB06195SeliciclibSmallMoleculeDrug
ENSG00000213923CSNK1EDB14989UmbralisibSmallMoleculeDrug

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for CSNK1E

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
CSNK1E6.92e+031.05e+001.50e-017.02e+002.19e-123.23e-11KICH
CSNK1E4.34e+031.63e+002.54e-016.43e+001.25e-102.11e-09CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
CSNK1E3.91e+031.09e+001.05e-011.04e+012.76e-258.52e-24COAD
CSNK1E4.76e+031.12e+002.13e-015.29e+001.23e-071.39e-06READ

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Sex-biased somatic mutation for CSNK1E

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for CSNK1E

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

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Exon skipping events with PSI in TCGA for CSNK1E

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
ESCAexon_skip_3694492.95e-011.73e-012.34e+001.94e-023.20e-021.22e-01
CHOLexon_skip_3694493.49e-016.88e-023.19e+001.41e-031.03e-022.80e-01

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
BRCAexon_skip_3694492.01e-017.41e-021.08e+012.00e-278.72e-261.27e-01

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RNA A-to-I editing events in TCGA for CSNK1E

∗Please access CAeditome for RNA editing annotation.
check buttonLandscape of RNA editing events across multiple cancer types.
ED heatmap

check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre
LUADCSNK1E-001chr22_38354806_-6.48e-013.89e-012.83e+004.62e-032.30e-022.58e-01
LUSCCSNK1E-001chr22_38355691_-3.97e-015.61e-01-2.74e+006.08e-034.91e-02-1.64e-01
STADCSNK1E-001chr22_38361284_-3.34e-012.18e-012.74e+006.08e-034.96e-021.16e-01

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for CSNK1E

check buttonTFs related to CSNK1E.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonCSNK1E related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for CSNK1E

check buttonRBPs related to ES in CSNK1E.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
STADANKHD1exon_skip_3694501.44e+016.17e-041.51e+019.99e-01Female-biased
ACCHNRNPA2B1exon_skip_3694591.24e+019.89e-011.20e+011.00e-02Male-biased
UVMHNRNPA2B1exon_skip_3694591.23e+019.98e-011.19e+011.73e-03Male-biased
LIHCANKHD1exon_skip_3694501.52e+012.84e-031.57e+019.97e-01Female-biased
DLBCHNRNPA2B1exon_skip_3694591.20e+011.21e-031.26e+019.98e-01Female-biased
KIRPANKHD1exon_skip_3694501.51e+011.00e+001.44e+011.80e-04Male-biased
BRCAANKHD1exon_skip_3694501.49e+019.87e-011.44e+011.26e-02Male-biased
ESCAPCBP2exon_skip_3694497.00e+009.86e-016.14e+007.40e-04Male-biased
READANKHD1exon_skip_3694501.42e+012.72e-041.49e+011.00e+00Female-biased
READFMR1exon_skip_3694578.29e+004.31e-038.69e+009.90e-01Female-biased
PCPGANKHD1exon_skip_3694501.47e+019.99e-011.41e+016.30e-04Male-biased
MESOHNRNPA2B1exon_skip_3694591.19e+019.50e-041.25e+019.99e-01Female-biased
MESOPCBP2exon_skip_3694496.08e+001.70e-036.61e+009.81e-01Female-biased
PAADANKHD1exon_skip_3694501.41e+014.65e-041.47e+019.99e-01Female-biased
KIRCANKHD1exon_skip_3694501.42e+017.83e-041.48e+019.99e-01Female-biased
KIRCFMR1exon_skip_3694578.67e+009.91e-018.28e+003.53e-03Male-biased
SARCANKHD1exon_skip_3694501.49e+019.98e-011.43e+011.98e-03Male-biased

check buttonCSNK1E related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs117488083chr22:32353755:G:A-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs76095964chr22:32354659:G:A-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs56150811chr22:32359110:C:A-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs55744002chr22:32360983:G:A-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs79038758chr22:32361819:G:A-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs73166368chr22:32362602:T:C-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs73166369chr22:32363812:T:A-0.2476794555759690.0079745511707285BLCAFemale-baised eQTL
rs77496665chr22:32352282:G:C-0.2470556007916030.0083646969015042BLCAFemale-baised eQTL
rs73166401chr22:32383980:A:C-0.2068269108683760.0449244616109098BLCAFemale-baised eQTL
rs57570397chr22:32384253:C:T-0.2068269108683760.0449244616109098BLCAFemale-baised eQTL
rs41282595chr22:32386167:G:A-0.2068269108683760.0449244616109098BLCAFemale-baised eQTL
rs56101849chr22:32394985:G:A-0.2068269108683760.0449244616109098BLCAFemale-baised eQTL
rs76956700chr22:32401488:A:G-0.2068269108683760.0449244616109098BLCAFemale-baised eQTL
rs41304681chr22:32406616:C:G-0.2068269108683760.0449244616109098BLCAFemale-baised eQTL
rs113069269chr22:32346595:C:T-0.2060782681472010.0471081324751125BLCAFemale-baised eQTL
rs78179756chr22:32350215:C:G-0.2060782681472010.0471081324751125BLCAFemale-baised eQTL
rs55878163chr22:32350349:T:C-0.2060782681472010.0471081324751125BLCAFemale-baised eQTL
rs1968023chr22:31546784:G:A--0.04842098102752580.00569454794396883LUADFemale-baised eQTL
rs9606854chr22:31534581:C:T--0.04763941282745160.00901166379861814LUADFemale-baised eQTL
rs5749295chr22:31536909:A:T--0.04199785966523930.0103748147775365LUADFemale-baised eQTL
rs9609311chr22:31522687:C:T--0.04759599063332180.0107261030508954LUADFemale-baised eQTL
rs5753723chr22:31606308:T:C-0.04887880822435080.0108676070049607LUADFemale-baised eQTL
rs12628135chr22:37669648:A:G-0.04011266621537570.0114111486207555LUADFemale-baised eQTL
rs9611137chr22:39286440:T:C-0.0850457331640210.0126359557978625LUADFemale-baised eQTL
rs5749227chr22:31185180:A:G-0.04703055829257750.0146197688896051LUADFemale-baised eQTL
rs5749248chr22:31287725:C:A-0.04713570343978230.0166548754647573LUADFemale-baised eQTL
rs5749222chr22:31160773:C:G-0.03987038927256510.0168169046198191LUADFemale-baised eQTL
rs2413052chr22:31387795:T:C--0.04735064167905150.0182903276180542LUADFemale-baised eQTL
rs5997893chr22:31160117:A:G-0.03924211384902370.0199534211252625LUADFemale-baised eQTL
rs5753486chr22:31162834:A:G-0.03924211384902370.0199534211252625LUADFemale-baised eQTL
rs8135417chr22:31163269:G:A-0.03919435052692460.0201755777511225LUADFemale-baised eQTL
rs5753630chr22:31465964:A:G--0.03962925439942440.0204157407079161LUADFemale-baised eQTL
rs5997969chr22:31394028:T:C-0.03979293347558360.0206789843487533LUADFemale-baised eQTL
rs732857chr22:37664843:G:A-0.03864230960814010.0208193288660192LUADFemale-baised eQTL
rs62236669chr22:37669330:T:C-0.03844406642004270.0211217143697058LUADFemale-baised eQTL
rs5998058chr22:31610422:T:C-0.0392927139512910.0293951782825622LUADFemale-baised eQTL
rs9606833chr22:31354027:T:C--0.04594233084346540.0298634036714112LUADFemale-baised eQTL
rs5753596chr22:31391486:C:T-0.03710518713204340.0303522882786917LUADFemale-baised eQTL
rs1894532chr22:37663743:T:C-0.03698115254211570.0312706279295611LUADFemale-baised eQTL
rs28540755chr22:29714563:C:T-0.07412480834520050.0318644421209869LUADFemale-baised eQTL
rs8138525chr22:31615943:T:C-0.03990055544551410.0319768124585518LUADFemale-baised eQTL
rs5753698chr22:31574068:T:G--0.03970346683392140.031988748478714LUADFemale-baised eQTL
rs9609329chr22:31570327:A:C--0.03988990844106210.0325262430151642LUADFemale-baised eQTL
rs6001530chr22:39296087:C:A-0.07361327555535170.0326888419854072LUADFemale-baised eQTL
rs9611138chr22:39298120:G:A-0.07361327555535170.0326888419854072LUADFemale-baised eQTL
rs60459126chr22:31376568:A:C-0.0571744436993120.0331522420522729LUADFemale-baised eQTL
rs9622675chr22:37657658:G:T-0.03716872626176510.0356839689787117LUADFemale-baised eQTL
rs9622677chr22:37658255:A:C-0.03716117043339090.035753845279688LUADFemale-baised eQTL
rs7287340chr22:37658318:C:T-0.03716117043339090.035753845279688LUADFemale-baised eQTL
rs7287358chr22:37658396:A:G-0.03716117043339090.035753845279688LUADFemale-baised eQTL
rs28873672chr22:31598483:T:G--0.03981691617731620.0359269896831461LUADFemale-baised eQTL
rs28838399chr22:31598484:G:A--0.03981691617731620.0359269896831461LUADFemale-baised eQTL
rs5749279chr22:31458223:A:G--0.0373102142241950.0369090943372779LUADFemale-baised eQTL
rs9622678chr22:37661331:A:G-0.03561761580453070.0375868028339195LUADFemale-baised eQTL
rs5997977chr22:31406242:T:C--0.03701029473402540.0413421716016133LUADFemale-baised eQTL
rs5749272chr22:31434365:T:C--0.03584931171944810.0423688892808297LUADFemale-baised eQTL
rs12485104chr22:37662725:T:C-0.03546395386985040.0436579879544091LUADFemale-baised eQTL
rs5749330chr22:31759459:T:C-0.04142320264318330.0446705650998266LUADFemale-baised eQTL
rs6518755chr22:31763151:T:C-0.04142320264318330.0446705650998266LUADFemale-baised eQTL
rs5997942chr22:31286462:C:T-0.04864258980457170.0488263435813227LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs10427961chr22:32617919:T:C-0.1004448315996620.0179434867370523KIRCMale-baised eQTL
rs12484719chr22:39212075:G:C-0.0421801625246050.0040954364437392BLCAMale-baised eQTL
rs5753625chr22:31458860:T:C-0.03884596583797080.00755725514497294BLCAMale-baised eQTL
rs2103853chr22:31459489:T:C-0.03867911031695470.00932938343029711BLCAMale-baised eQTL
rs5757559chr22:39210066:G:A-0.0396773462596110.0138627814338164BLCAMale-baised eQTL
rs9613590chr22:28301929:C:T-0.08125843095972190.0190536641052627BLCAMale-baised eQTL
rs5753659chr22:31497627:A:G-0.04496295252198540.0208789800841589BLCAMale-baised eQTL
rs5750775chr22:39211070:C:T-0.03836379094336140.0212151432824581BLCAMale-baised eQTL
rs6001500chr22:39211128:A:C-0.03836379094336140.0212151432824581BLCAMale-baised eQTL
rs12106573chr22:39211437:T:C-0.03836379094336140.0212151432824581BLCAMale-baised eQTL
rs62228347chr22:39212009:T:C-0.03836379094336140.0212151432824581BLCAMale-baised eQTL
rs73424730chr22:39211609:A:G-0.03879095327877180.0219112255760543BLCAMale-baised eQTL
rs2050142chr22:39209285:T:C-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs2050143chr22:39209744:A:G-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs5757560chr22:39210313:T:C-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs12162663chr22:39210440:A:G-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs12162673chr22:39210480:A:G-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs12162740chr22:39210496:T:G-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs6001497chr22:39210689:C:A-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs5750774chr22:39210928:G:A-0.03808576489705360.0234714200991819BLCAMale-baised eQTL
rs12484710chr22:39212188:C:A-0.03788287835553590.0237297465519348BLCAMale-baised eQTL
rs5757558chr22:39209153:T:C-0.03783760713688530.0255064518429844BLCAMale-baised eQTL
rs4820948chr22:31169108:A:G--0.03554885632507520.0266727148509104BLCAMale-baised eQTL
rs5997896chr22:31170392:A:G--0.03551524788747760.0275791290691581BLCAMale-baised eQTL
rs35269245chr22:29236607:C:T-0.03791181716411250.0288910881211052BLCAMale-baised eQTL
rs5752890chr22:29246376:G:A-0.03630721641549270.0320562452931728BLCAMale-baised eQTL
rs1003703chr22:29232626:G:A-0.03712322972933870.0349546674167976BLCAMale-baised eQTL
rs5753630chr22:31465964:A:G-0.03454403324109780.0413307308393846BLCAMale-baised eQTL
rs5750777chr22:39216512:G:A-0.0368768717750490.0476076979849054BLCAMale-baised eQTL
rs17298479chr22:38955461:G:A-0.04384795002265780.0430845319168671LUADMale-baised eQTL
rs917208chr22:31097139:G:A--0.1290102866390750.000390343736592144COADMale-baised eQTL
rs73156787chr22:31103769:G:A--0.1281057452971710.000466896222291812COADMale-baised eQTL
rs73156781chr22:31084209:C:T--0.1140815280915090.00177841820555005COADMale-baised eQTL
rs4239890chr22:38197923:T:C--0.09326072450404740.0372213716343989COADMale-baised eQTL
rs5756965chr22:38197800:T:C--0.09321126773990550.0372612597641283COADMale-baised eQTL
rs10483152chr22:28999981:A:G--0.06074390083283390.0375329339114349COADMale-baised eQTL
rs4821762chr22:38200138:A:C--0.09408839978590260.0388307564260177COADMale-baised eQTL
rs13053449chr22:33066753:G:A-0.0649781853159480.0389053229989591COADMale-baised eQTL
rs13057573chr22:33064358:A:C-0.06480550928892570.0395071755915258COADMale-baised eQTL
rs997567chr22:29002010:C:T--0.06017566172880530.0413497893882356COADMale-baised eQTL
rs9607515chr22:38197634:T:A--0.09207622485173960.0416561320675539COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of CSNK1E

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000213923CSNK1EC0005586Bipolar Disorder5PSYGENET
ENSG00000213923CSNK1EC0036341Schizophrenia2PSYGENET