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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000178372

Summary for CALML5

check button Gene summary

Gene informationEnsembl ID

ENSG00000178372

Gene symbol

CALML5

Gene namecalmodulin like 5
HGNC

18180

Entrez ID

51806

Gene typeprotein_coding
SynonymsCALML5|CLSP
UniProtAcc

Q9NZT1


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for CALML5

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
CALML55.00e+03-5.41e+008.46e-01-6.39e+001.65e-106.41e-08BRCA

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
CALML51.99e+037.22e+001.11e+006.49e+008.58e-111.84e-09BLCA
CALML52.01e+034.73e+001.14e+004.14e+003.49e-054.26e-04ESCA

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
CALML54.65e+032.99e+002.84e-011.05e+017.22e-263.11e-25BRCA

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Sex-biased somatic mutation for CALML5

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for CALML5

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg16048771chr10:5499183CGI:chr10:5498822-5499552promoter,exon,CDS,gene body8.08e-019.15e-01-1.98e+004.77e-024.91e-02-1.07e-01
BRCAcg14096855chr10:5499860CGI:chr10:5498822-5499552promoter6.28e-017.47e-01-2.58e+009.96e-032.66e-02-1.19e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
HNSCcg23625250chr10:5498861CGI:chr10:5498822-5499552UTR,promoter,exon,gene body7.83e-019.20e-01-2.79e+005.29e-037.46e-03-1.38e-01
LUSCcg02382706chr10:5498704CGI:chr10:5498822-5499552UTR,promoter,exon,gene body8.00e-019.13e-01-3.26e+001.10e-032.76e-03-1.13e-01
LUSCcg00797152chr10:5499605CGI:chr10:5498822-5499552promoter5.04e-017.47e-01-4.08e+004.43e-055.44e-04-2.43e-01
LUSCcg02754943chr10:5499755CGI:chr10:5498822-5499552promoter5.24e-017.05e-01-4.25e+002.15e-055.26e-04-1.82e-01
LUSCcg17278890chr10:5499763CGI:chr10:5498822-5499552promoter6.85e-018.96e-01-4.04e+005.42e-055.68e-04-2.11e-01
LUSCcg14096855chr10:5499860CGI:chr10:5498822-5499552promoter7.02e-018.40e-01-3.71e+002.06e-049.85e-04-1.38e-01
BLCAcg17278890chr10:5499763CGI:chr10:5498822-5499552promoter6.44e-018.11e-01-3.27e+001.08e-032.41e-03-1.67e-01
BLCAcg14096855chr10:5499860CGI:chr10:5498822-5499552promoter7.15e-018.38e-01-3.47e+005.20e-041.37e-03-1.23e-01
LIHCcg21130124chr10:5500365CGI:chr10:5498822-5499552promoter7.86e-019.13e-01-5.31e+001.07e-075.59e-07-1.27e-01
KIRPcg00797152chr10:5499605CGI:chr10:5498822-5499552promoter8.35e-017.00e-015.56e+002.75e-083.11e-071.35e-01
CHOLcg00797152chr10:5499605CGI:chr10:5498822-5499552promoter7.27e-018.57e-01-2.43e+001.50e-022.65e-02-1.30e-01
CHOLcg02754943chr10:5499755CGI:chr10:5498822-5499552promoter6.09e-017.48e-01-2.88e+004.04e-031.47e-02-1.38e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg00797152chr10:5499605CGI:chr10:5498822-5499552promoter4.10e-015.56e-01-9.63e+006.19e-223.96e-21-1.46e-01
BRCAcg02754943chr10:5499755CGI:chr10:5498822-5499552promoter4.51e-015.95e-01-1.21e+011.48e-333.47e-32-1.44e-01
BRCAcg17278890chr10:5499763CGI:chr10:5498822-5499552promoter5.90e-017.24e-01-8.34e+007.72e-173.24e-16-1.35e-01
BRCAcg14096855chr10:5499860CGI:chr10:5498822-5499552promoter6.28e-017.46e-01-7.49e+006.81e-142.28e-13-1.18e-01
HNSCcg00797152chr10:5499605CGI:chr10:5498822-5499552promoter4.59e-013.46e-012.00e+004.53e-024.65e-021.13e-01
HNSCcg17278890chr10:5499763CGI:chr10:5498822-5499552promoter6.24e-015.01e-012.23e+002.59e-023.23e-021.23e-01

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Exon skipping events with PSI in TCGA for CALML5

∗Please access ExonSkipDB for exon skipping annotation.
check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for CALML5

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for CALML5

check buttonTFs related to CALML5.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
DLBCZNF181CALML54.27e+009.89e-012.84e+001.12e-03Male-biased
DLBCZNF519CALML54.17e+009.86e-012.87e+001.79e-03Male-biased
DLBCZNF571CALML54.33e+009.89e-012.98e+001.52e-03Male-biased
DLBCZNF770CALML54.32e+009.89e-012.97e+001.48e-03Male-biased
DLBCZNF774CALML54.18e+009.86e-012.96e+002.44e-03Male-biased

check buttonCALML5 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for CALML5

check buttonRBPs related to ES in CALML5.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonCALML5 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs10905390chr10:8495732:A:G-0.1300932433111130.00424034808031664LUSCFemale-baised eQTL
rs2439909chr10:6787139:G:T--0.09388254662500290.00343730738608206STADFemale-baised eQTL
rs2439908chr10:6787568:A:G--0.09388254662500290.00343730738608206STADFemale-baised eQTL
rs2501696chr10:6790245:T:A--0.09388254662500290.00343730738608206STADFemale-baised eQTL
rs61830472chr10:3404473:A:G-0.08628269645432650.015575277175287STADFemale-baised eQTL
rs11251881chr10:3420839:G:C-0.08628269645432650.015575277175287STADFemale-baised eQTL
rs11251885chr10:3437971:T:A-0.08630959042777870.0156350825594319STADFemale-baised eQTL
rs12261202chr10:3375220:C:A-0.0801495675243520.0297745788470125STADFemale-baised eQTL
rs17135199chr10:3391563:A:G-0.08026840415214460.0299575442391116STADFemale-baised eQTL
rs945799chr10:3396143:A:G--0.08033213044614870.0301833036591027STADFemale-baised eQTL
rs4373823chr10:3398969:T:A--0.08026868236633030.030222172164282STADFemale-baised eQTL
rs7085235chr10:3399498:C:T--0.08026868236633030.030222172164282STADFemale-baised eQTL
rs6602191chr10:6769443:G:T-0.07464055540994510.0329265968747407STADFemale-baised eQTL
rs61830473chr10:3410353:C:T-0.07531263933133560.0474543968428339STADFemale-baised eQTL
rs74416796chr10:11047491:C:T-0.1331454719987920.0492577906265304STADFemale-baised eQTL
rs192697783chr10:6800512:T:C-0.1397824344713030.000674368620805198BLCAFemale-baised eQTL
rs112393198chr10:6801858:G:A-0.1396542991714860.000683867212119107BLCAFemale-baised eQTL
rs11254718chr10:6802593:G:A-0.1396542991714860.000683867212119107BLCAFemale-baised eQTL
rs10904987chr10:6802918:T:G-0.1396542991714860.000683867212119107BLCAFemale-baised eQTL
rs10904988chr10:6802922:C:T-0.1396542991714860.000683867212119107BLCAFemale-baised eQTL
rs12412932chr10:14071283:T:C-0.143246649915970.00108852410822771BLCAFemale-baised eQTL
rs7070908chr10:12625195:G:A-0.1180799302936020.004799534999531BLCAFemale-baised eQTL
rs11257921chr10:12625875:A:G-0.1180799302936020.004799534999531BLCAFemale-baised eQTL
rs72771756chr10:12631937:G:C-0.1180799302936020.004799534999531BLCAFemale-baised eQTL
rs7897208chr10:12632545:C:G-0.1180799302936020.004799534999531BLCAFemale-baised eQTL
rs11254690chr10:6797287:G:A-0.1166423981232720.00669682954761096BLCAFemale-baised eQTL
rs73573548chr10:12004248:A:G-0.1222042257990530.00695942674203252BLCAFemale-baised eQTL
rs7913028chr10:12005632:A:G-0.1222042257990530.00695942674203252BLCAFemale-baised eQTL
rs57280404chr10:12005735:C:A-0.1222042257990530.00695942674203252BLCAFemale-baised eQTL
rs11812638chr10:12006053:C:T-0.1222042257990530.00695942674203252BLCAFemale-baised eQTL
rs11594545chr10:12006775:A:G-0.1222042257990530.00695942674203252BLCAFemale-baised eQTL
rs187998580chr10:6800544:A:G-0.1164839243317540.0070215139494606BLCAFemale-baised eQTL
rs11254706chr10:6801328:A:G-0.1059665118718090.0162632931353006BLCAFemale-baised eQTL
rs78706219chr10:6801705:G:A-0.1059665118718090.0162632931353006BLCAFemale-baised eQTL
rs141733899chr10:6801767:G:C-0.1059665118718090.0162632931353006BLCAFemale-baised eQTL
rs200319199chr10:6802111:G:T-0.1059665118718090.0162632931353006BLCAFemale-baised eQTL
rs201118935chr10:6802112:T:A-0.1059665118718090.0162632931353006BLCAFemale-baised eQTL
rs4405215chr10:12328594:G:C-0.09205029775606830.0182920789470983BLCAFemale-baised eQTL
rs370659568chr10:6800010:A:G-0.0985956396893270.0216051963044098BLCAFemale-baised eQTL
rs72775910chr10:11867402:C:T-0.08704858878561070.0354756918371169BLCAFemale-baised eQTL
rs72775912chr10:11867492:C:T-0.08704858878561070.0354756918371169BLCAFemale-baised eQTL
rs72775940chr10:11882218:T:C-0.08628499890859560.0390525387747137BLCAFemale-baised eQTL
rs72775943chr10:11882874:G:A-0.08628499890859560.0390525387747137BLCAFemale-baised eQTL
rs72775944chr10:11883055:T:C-0.08628499890859560.0390525387747137BLCAFemale-baised eQTL
rs12416669chr10:11853325:C:T-0.08629062892918070.0394664004059363BLCAFemale-baised eQTL
rs145759608chr10:11860570:G:A-0.08629062892918070.0394664004059363BLCAFemale-baised eQTL
rs72774089chr10:11860639:G:T-0.08629062892918070.0394664004059363BLCAFemale-baised eQTL
rs74657303chr10:11870229:G:A-0.08628229222945370.0395101085415548BLCAFemale-baised eQTL
rs41291265chr10:11871388:A:G-0.08628229222945370.0395101085415548BLCAFemale-baised eQTL
rs10905021chr10:6818415:T:C-0.09091036004737570.0405659765034035BLCAFemale-baised eQTL
rs6602745chr10:6494590:C:T-0.1007910150656040.0406378420023955BLCAFemale-baised eQTL
rs7904257chr10:5838525:G:T-0.09027673751355860.0414950292804303BLCAFemale-baised eQTL
rs77476954chr10:8896598:A:G-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs78539108chr10:8897235:A:T-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs76407406chr10:8902089:A:G-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs79186901chr10:8905645:T:C-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs17413004chr10:8907217:T:A-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs75375842chr10:8909066:C:A-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs17413266chr10:8910589:C:T-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs74319752chr10:8912487:T:C-0.0889901927255060.0425666717751078BLCAFemale-baised eQTL
rs76141549chr10:8898991:G:A-0.0889670352290260.0429943928813387BLCAFemale-baised eQTL
rs78400042chr10:8892059:T:G-0.0889667723401460.0429960881288984BLCAFemale-baised eQTL
rs76718063chr10:8892817:G:T-0.0889667723401460.0429960881288984BLCAFemale-baised eQTL
rs77097907chr10:8904507:C:A-0.08885901215139980.0436160708823378BLCAFemale-baised eQTL
rs76897879chr10:590404:C:T-0.1004644255177670.000476668183588895LUADFemale-baised eQTL
rs11252981chr10:524844:C:G-0.09279758348135560.00123905450747837LUADFemale-baised eQTL
rs11253246chr10:570670:C:T-0.09277312627520960.0012494190208442LUADFemale-baised eQTL
rs11253255chr10:577146:G:A-0.09277312627520960.0012494190208442LUADFemale-baised eQTL
rs78706681chr10:550999:G:A-0.08921869008765240.00194848381279692LUADFemale-baised eQTL
rs11253134chr10:549533:C:T-0.08919464695302660.00196401946316384LUADFemale-baised eQTL
rs35190859chr10:7422131:G:A-0.06639881567677990.00322708347309925LUADFemale-baised eQTL
rs71481723chr10:7422626:G:A-0.06639881567677990.00322708347309925LUADFemale-baised eQTL
rs12355543chr10:432245:T:G-0.07804614036009940.00705902921042594LUADFemale-baised eQTL
rs60374183chr10:11156167:T:G-0.04840792662358090.0495335917515758LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs686458chr10:14418941:C:T-0.03889405075774110.00626350852505482LUADMale-baised eQTL
rs2480538chr10:14410544:G:A-0.03861651867153580.00646140712790398LUADMale-baised eQTL
rs634253chr10:14412213:T:C-0.03861651867153580.00646140712790398LUADMale-baised eQTL
rs671858chr10:14420314:G:T-0.0387293104113890.00668783920561585LUADMale-baised eQTL
rs689229chr10:14419608:G:C-0.03876383240973640.00673598120444482LUADMale-baised eQTL
rs612931chr10:14416337:C:A-0.03801629919133730.00840357501236954LUADMale-baised eQTL
rs666482chr10:14404245:T:A-0.03610538312801880.0133920123717776LUADMale-baised eQTL
rs649364chr10:14405340:T:C-0.0352603021294110.0149361814563057LUADMale-baised eQTL
rs10906666chr10:14403730:A:T--0.03268712324710540.026414976520142LUADMale-baised eQTL
rs1041335chr10:14393136:G:C--0.03251874249800940.0264731627158195LUADMale-baised eQTL
rs10796187chr10:14403582:G:C--0.03135813925069380.0413944503122615LUADMale-baised eQTL
rs78293195chr10:14403583:C:G--0.03135813925069380.0413944503122615LUADMale-baised eQTL
rs662656chr10:14378163:T:C-0.03076777290985690.0457404341219114LUADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000178372
CpG Site: cg00797152
Position to Gene: promoter
Male Effect: -
Female Effect: -0.320658945181318
eQTM boxplot analysisGene ID: ENSG00000178372
CpG Site: cg02382706
Position to Gene: gene,exon,promoter,UTR
Male Effect: -0.365476578907404
Female Effect: -
eQTM boxplot analysisGene ID: ENSG00000178372
CpG Site: cg00797152
Position to Gene: promoter
Male Effect: -0.365476578907404
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg02382706chr10:5498704gene,exon,promoter,UTR-0.3654765789074044.14911344685434e-14-0.53325722814071321.4519047639424045e-17STAD
cg00797152chr10:5499605promoter-0.3654765789074044.14911344685434e-14-0.53325722814071321.4519047639424045e-17STAD

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg00797152chr10:5499605promoter-0.3206589451813183.81758541389144e-11-0.44976157382564144.20921094993489e-14LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of CALML5

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource