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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000168743

Summary for NPNT

check button Gene summary

Gene informationEnsembl ID

ENSG00000168743

Gene symbol

NPNT

Gene namenephronectin
HGNC

27405

Entrez ID

255743

Gene typeprotein_coding
SynonymsNPNT|EGFL6L|POEM
UniProtAcc

Q6UXI9


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for NPNT

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
NPNT1.17e+041.49e+004.24e-013.50e+004.58e-046.38e-03BRCA

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
NPNT3.15e+033.11e+006.63e-014.69e+002.75e-061.79e-05CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
NPNT1.07e+041.92e+001.41e-011.36e+012.53e-421.99e-41BRCA

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Sex-biased somatic mutation for NPNT

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for NPNT

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
KIRCcg05297121chr4:105894932CGI:chr4:105895258-105896612promoter,gene body1.95e-018.33e-026.15e+007.90e-101.01e-081.12e-01
LIHCcg05297121chr4:105894932CGI:chr4:105895258-105896612promoter,gene body3.03e-011.57e-014.26e+002.04e-055.09e-051.46e-01
LIHCcg23198559chr4:105895052CGI:chr4:105895258-105896612promoter,gene body2.47e-011.31e-013.13e+001.73e-032.57e-031.16e-01
LIHCcg03607115chr4:105895687CGI:chr4:105895258-105896612promoter,exon,CDS,gene body3.27e-011.80e-013.03e+002.45e-033.50e-031.47e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
LIHCcg26533745chr4:105895613CGI:chr4:105895258-105896612UTR,promoter,exon,gene body1.27e-011.65e-022.60e+009.40e-031.32e-021.11e-01

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Exon skipping events with PSI in TCGA for NPNT

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
COADexon_skip_4254871.13e-021.37e-01-3.98e+006.79e-054.20e-04-1.26e-01

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
STADexon_skip_4254873.83e-021.51e-01-2.79e+005.26e-031.77e-02-1.12e-01
READexon_skip_4254871.04e-021.19e-01-3.03e+002.42e-031.10e-02-1.09e-01

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RNA A-to-I editing events in TCGA for NPNT

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for NPNT

check buttonTFs related to NPNT.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
BRCABARX2NPNT4.73e+009.86e-013.47e+009.14e-03Male-biased
BRCADMRT3NPNT4.89e+009.89e-013.52e+006.85e-03Male-biased
BRCADMRTA1NPNT4.79e+009.88e-013.44e+006.92e-03Male-biased
BRCADMRTA2NPNT4.81e+009.89e-013.45e+006.84e-03Male-biased
BRCAFOXA1NPNT4.40e+009.87e-012.88e+004.14e-03Male-biased
BRCAFOXD3NPNT4.45e+009.89e-012.82e+002.97e-03Male-biased
BRCAFOXG1NPNT4.39e+009.88e-012.70e+002.52e-03Male-biased
BRCAFOXJ3NPNT4.10e+009.81e-012.64e+004.79e-03Male-biased
BRCAMEF2ANPNT4.18e+009.84e-012.54e+002.92e-03Male-biased
BRCAMEF2DNPNT4.31e+009.81e-013.03e+008.28e-03Male-biased
BRCANKX3-1NPNT4.83e+009.92e-013.25e+003.65e-03Male-biased
BRCASOX9NPNT4.55e+009.83e-013.32e+009.88e-03Male-biased
BRCAZNF334NPNT4.51e+009.92e-012.35e+005.94e-04Male-biased
BRCAZNF418NPNT4.36e+009.91e-011.14e+001.81e-05Male-biased
BRCAZNF79NPNT4.28e+009.89e-012.14e+006.33e-04Male-biased
PAADBARX2NPNT4.58e+009.84e-013.75e+001.02e-02Male-biased
PAADDMRT3NPNT4.58e+009.84e-013.76e+001.03e-02Male-biased
PAADDMRTA1NPNT4.49e+009.82e-013.67e+001.05e-02Male-biased
PAADDMRTA2NPNT4.52e+009.82e-013.72e+001.17e-02Male-biased
PAADFOXA1NPNT4.09e+009.82e-013.11e+004.75e-03Male-biased
PAADFOXD3NPNT4.13e+009.84e-013.14e+004.27e-03Male-biased
PAADFOXG1NPNT4.05e+009.84e-012.96e+002.56e-03Male-biased
PAADNANOGNPNT4.34e+009.86e-013.39e+005.54e-03Male-biased
PAADNKX3-1NPNT4.44e+009.83e-013.60e+009.58e-03Male-biased
PAADPRDM1NPNT4.06e+009.82e-013.08e+004.56e-03Male-biased
PAADSOX9NPNT4.45e+009.84e-013.58e+008.46e-03Male-biased
PAADZNF334NPNT4.12e+009.88e-012.65e+003.35e-04Male-biased
PAADZNF79NPNT3.82e+009.80e-012.47e+006.51e-04Male-biased
PAADZNF85NPNT4.13e+009.82e-013.18e+005.60e-03Male-biased
SKCMBARHL2NPNT4.01e+001.17e-024.94e+009.81e-01Female-biased
SKCMBARX2NPNT3.34e+004.35e-034.58e+009.84e-01Female-biased
SKCMDMRT3NPNT3.59e+006.52e-034.70e+009.83e-01Female-biased
SKCMDMRTA1NPNT3.37e+005.23e-034.55e+009.82e-01Female-biased
SKCMDMRTA2NPNT3.51e+006.24e-034.64e+009.83e-01Female-biased
SKCMLHX2NPNT4.00e+008.48e-035.04e+009.85e-01Female-biased
SKCMNKX3-1NPNT3.17e+002.97e-034.53e+009.84e-01Female-biased
SKCMPBX4NPNT3.63e+008.62e-034.65e+009.80e-01Female-biased

check buttonNPNT related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for NPNT

check buttonRBPs related to ES in NPNT.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonNPNT related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs17025657chr4:96575842:G:A-0.550729049603240.0351530779750262GBMFemale-baised eQTL
rs113464789chr4:106633863:T:A-0.223850796808580.0346318791981386KIRPFemale-baised eQTL
rs72679802chr4:114882943:A:G-0.1917993035102560.0126950580498919LIHCFemale-baised eQTL
rs72681403chr4:114883043:C:A-0.1917993035102560.0126950580498919LIHCFemale-baised eQTL
rs72681404chr4:114883246:G:T-0.1917993035102560.0126950580498919LIHCFemale-baised eQTL
rs2019195chr4:114860745:A:G-0.1692769661197290.0345313374918389LIHCFemale-baised eQTL
rs72679768chr4:114861693:G:T-0.1692769661197290.0345313374918389LIHCFemale-baised eQTL
rs72679769chr4:114861701:A:G-0.1692769661197290.0345313374918389LIHCFemale-baised eQTL
rs16997326chr4:114861742:A:G-0.1692769661197290.0345313374918389LIHCFemale-baised eQTL
rs72679781chr4:114871659:A:T-0.1692769661197290.0345313374918389LIHCFemale-baised eQTL
rs72679782chr4:114871667:C:T-0.1692769661197290.0345313374918389LIHCFemale-baised eQTL
rs72681405chr4:114885570:C:T-0.1697342127470150.0407751576586078LIHCFemale-baised eQTL
rs17679144chr4:114886653:T:G-0.169615295232540.0418774127109201LIHCFemale-baised eQTL
rs75847777chr4:99630087:T:C-0.1772541165496970.0307607732639507BLCAFemale-baised eQTL
rs10013883chr4:99535122:C:T-0.1245588749647810.0368691290984088BLCAFemale-baised eQTL
rs434649chr4:107050819:T:C--0.06350772536410590.0307805878252723LUADFemale-baised eQTL
rs393169chr4:107041186:A:T--0.06344958877557840.0343529255619983LUADFemale-baised eQTL
rs406805chr4:107041196:T:G--0.06344958877557840.0343529255619983LUADFemale-baised eQTL
rs429563chr4:107050545:T:C--0.06277787460956260.0343918579967583LUADFemale-baised eQTL
rs370122chr4:107045621:A:C--0.0632817424737630.0345044765109694LUADFemale-baised eQTL
rs379168chr4:107048447:C:A--0.06314614670743730.0356050014019948LUADFemale-baised eQTL
rs443312chr4:107048637:C:T--0.06314614670743730.0356050014019948LUADFemale-baised eQTL
rs2704332chr4:107037826:G:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2850413chr4:107038187:T:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2704331chr4:107039090:G:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2704330chr4:107039476:A:G--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2850415chr4:107039555:T:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2866917chr4:107039650:T:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2903426chr4:107039670:G:A--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2903425chr4:107039671:T:G--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs1573479chr4:107039711:A:G--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2850416chr4:107040112:C:T--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2704328chr4:107040119:G:A--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2704327chr4:107040174:A:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2850417chr4:107040317:T:C--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs6841122chr4:107040558:C:T--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs383567chr4:107040610:A:G--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs406260chr4:107040981:T:A--0.06301783819775350.036477312163111LUADFemale-baised eQTL
rs2850414chr4:107038467:A:G--0.06246806917784470.0390904563124604LUADFemale-baised eQTL
rs400701chr4:107042480:C:T--0.06252022345292090.0399799351575579LUADFemale-baised eQTL
rs373505chr4:107044219:T:A--0.06252022345292090.0399799351575579LUADFemale-baised eQTL
rs2704333chr4:107037366:T:G--0.06336037312234040.0406052066788088LUADFemale-baised eQTL
rs377783chr4:107046799:G:T--0.06299230241744010.0433581045840972LUADFemale-baised eQTL
rs378587chr4:107047064:G:T--0.06299230241744010.0433581045840972LUADFemale-baised eQTL
rs416166chr4:107055698:A:C--0.06115914747339770.0444830870086745LUADFemale-baised eQTL
rs367473chr4:107051297:T:A--0.06040836832688980.0457613446860204LUADFemale-baised eQTL
rs375838chr4:107052852:G:A--0.06061054321381320.0474343574638034LUADFemale-baised eQTL
rs402455chr4:107052856:T:C--0.06061054321381320.0474343574638034LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs77288922chr4:112830408:A:T-0.3586946308878920.000226694500063003SARCMale-baised eQTL
rs78334545chr4:112830615:A:T-0.3586946308878920.000226694500063003SARCMale-baised eQTL
rs511049chr4:110906979:T:C--0.1048630629129220.0351300954765743SARCMale-baised eQTL
rs551286chr4:110911433:T:A--0.1045078344492050.0372370409095138SARCMale-baised eQTL
rs570557chr4:110911612:C:T--0.1045078344492050.0372370409095138SARCMale-baised eQTL
rs523697chr4:110912160:A:G--0.1045078344492050.0372370409095138SARCMale-baised eQTL
rs581241chr4:110915676:T:C--0.1045078344492050.0372370409095138SARCMale-baised eQTL
rs580562chr4:110910517:A:G--0.1041281539873820.0397621182645113SARCMale-baised eQTL
rs10516589chr4:112823084:A:G-0.1959455515273420.045345132129949SARCMale-baised eQTL
rs7670379chr4:101645554:A:T-0.07686953993105040.0158227713430852LUSCMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000168743
CpG Site: cg22738800
Position to Gene: gene
Male Effect: -
Female Effect: -0.458020798073433
eQTM boxplot analysisGene ID: ENSG00000168743
CpG Site: cg22738800
Position to Gene: gene
Male Effect: -0.453895282368038
Female Effect: -
eQTM boxplot analysisGene ID: ENSG00000168743
CpG Site: cg22738800
Position to Gene: gene
Male Effect: -0.455444735856498
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg22738800chr4:105900550gene-0.4538952823680382.09728813757499e-11-0.48413108084460461.66505293127131e-14LUAD
cg22738800chr4:105900550gene-0.4554447358564988.7801521375774e-11-0.462285500678266466.894448251983252e-13STAD

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg22738800chr4:105900550gene-0.4580207980734336.48277602252939e-21-0.86378214939182846.263336890876871e-25PAAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of NPNT

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource