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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000164603

Summary for C7orf60

check button Gene summary

Gene informationEnsembl ID

ENSG00000164603

Gene symbol

C7orf60

Gene namebase methyltransferase of 25S rRNA 2 homolog
HGNC

26475

Entrez ID

154743

Gene typeprotein_coding
SynonymsBMT2|DKFZp762M126|FLJ31818|SAMTOR
UniProtAcc

Q1RMZ1


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for C7orf60

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

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Sex-biased somatic mutation for C7orf60

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for C7orf60

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

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Exon skipping events with PSI in TCGA for C7orf60

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for C7orf60

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for C7orf60

check buttonTFs related to C7orf60.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
BLCASTAT2C7orf603.38e+003.43e-034.49e+009.89e-01Female-biased
BLCAZNF98C7orf604.07e+001.02e-024.92e+009.86e-01Female-biased

check buttonC7orf60 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for C7orf60

check buttonRBPs related to ES in C7orf60.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonC7orf60 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription
eQTL boxplot analysisGene ID: ENSG00000164603
SNP ID: rs28546198
Position to Gene: gene,promoter
Male Effect: -
Female Effect: 0.0793012665604906

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs929405chr7:105795103:C:T-0.09230961658991770.0126632419803786KIRCFemale-baised eQTL
rs62482781chr7:105794306:C:T-0.09214725922466250.0130927612701152KIRCFemale-baised eQTL
rs12533538chr7:105790867:C:A-0.08881868747026850.0183963139280755KIRCFemale-baised eQTL
rs78965053chr7:105805310:G:A-0.08206324502264860.0326977151383845KIRCFemale-baised eQTL
rs28546198chr7:112939300:A:Tgene,promoter0.07930126656049064.45938601305125e-05LUADFemale-baised eQTL
rs16873394chr7:112483454:C:T-0.06086725227544620.00374229499858718LUADFemale-baised eQTL
rs7456498chr7:104027384:C:T-0.04399380523470920.023264579023567LUADFemale-baised eQTL
rs56256545chr7:104020058:C:G-0.0502952756962760.043789179312346LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs17685099chr7:122902683:G:T-0.1007420095578430.00810000409366196BLCAMale-baised eQTL
rs73186270chr7:106804069:G:A-0.1145251183017040.0119911343432735BLCAMale-baised eQTL
rs73186233chr7:106772891:G:A-0.09627443344062650.0238218217622643BLCAMale-baised eQTL
rs73186249chr7:106783368:G:T-0.098203627259060.0267137853844416BLCAMale-baised eQTL
rs6466133chr7:106783243:T:C-0.09772416816964930.0283120811648326BLCAMale-baised eQTL
rs34723270chr7:108250540:A:G-0.06902508582405680.00289066167199256LUADMale-baised eQTL
rs17155335chr7:108249239:A:T-0.06599856302147240.00376661139175113LUADMale-baised eQTL
rs2111203chr7:108253251:A:G-0.066699048040690.00426582202409927LUADMale-baised eQTL
rs73441852chr7:120604157:G:A-0.1464742335919670.00607703480886173LUADMale-baised eQTL
rs2395977chr7:108255179:T:C-0.06525744651419490.00676731752884166LUADMale-baised eQTL
rs7776972chr7:108251778:G:C-0.06473284922255710.00802771041222527LUADMale-baised eQTL
rs2284284chr7:108252776:A:G-0.06141889265351590.0121951705446889LUADMale-baised eQTL
rs13232973chr7:112138531:C:T-0.1082191914131190.0157034913587448LUADMale-baised eQTL
rs73425858chr7:120769278:T:C-0.0650219097916190.0401568492814347LUADMale-baised eQTL
rs55843101chr7:108249935:C:T-0.05517169914763050.0431546435805525LUADMale-baised eQTL
rs73423717chr7:120617764:A:T-0.1134584848916660.0462850042213815LUADMale-baised eQTL
rs10279511chr7:106147152:G:A-0.07712806835490312.3927365289473e-05COADMale-baised eQTL
rs176509chr7:106117434:G:A--0.1268545744398870.000419338294487434COADMale-baised eQTL
rs12666126chr7:103959114:C:T-0.1080779102836040.000493837721187006COADMale-baised eQTL
rs12666162chr7:103959132:G:A-0.1080779102836040.000493837721187006COADMale-baised eQTL
rs12666169chr7:103959297:C:T-0.1078336147612840.000505177433419842COADMale-baised eQTL
rs12671050chr7:103959869:A:C-0.1078336147612840.000505177433419842COADMale-baised eQTL
rs12666713chr7:103959918:C:A-0.1078336147612840.000505177433419842COADMale-baised eQTL
rs7794418chr7:103958106:A:G-0.1014083819751550.00110733147778625COADMale-baised eQTL
rs726126chr7:121828042:T:G-0.06814643252443160.00113205454748504COADMale-baised eQTL
rs17155888chr7:103775848:T:A--0.06473330608605470.00137437648237082COADMale-baised eQTL
rs7794238chr7:103957937:A:T-0.09852408070502290.00172128356693215COADMale-baised eQTL
rs7787222chr7:106064999:C:T-0.1358823540222160.0022953399723208COADMale-baised eQTL
rs10230306chr7:106114359:C:T--0.1214653233999610.00276254900118327COADMale-baised eQTL
rs1106085chr7:110211098:C:T-0.06418044848595950.00326273024643174COADMale-baised eQTL
rs10249457chr7:118012517:A:C-0.05731764994419510.00430369556402156COADMale-baised eQTL
rs6466354chr7:110729361:C:G--0.08133951599304520.00499141348534913COADMale-baised eQTL
rs1528246chr7:116216548:T:C--0.06258287771818850.00600220428739265COADMale-baised eQTL
rs6965195chr7:121233384:G:A-0.05777229917801950.00682542896462687COADMale-baised eQTL
rs39397chr7:103849482:C:A-0.05973749431673720.00702226841868021COADMale-baised eQTL
rs39395chr7:103849282:G:A-0.05842991565487050.0086218730334908COADMale-baised eQTL
rs39389chr7:103846291:C:T-0.05859032242874120.0103718834620196COADMale-baised eQTL
rs39392chr7:103847445:C:T-0.05857735932412530.010404474351657COADMale-baised eQTL
rs4727581chr7:103955754:G:C--0.05769970861283960.0104212371432881COADMale-baised eQTL
rs116402560chr7:103786781:T:G--0.05821263884652930.0113245754288192COADMale-baised eQTL
rs2237645chr7:103881801:C:T-0.09198701655857170.0117029686575279COADMale-baised eQTL
rs74697472chr7:113514067:C:T-0.08487887036524010.013802351053471COADMale-baised eQTL
rs4727850chr7:117404236:G:A-0.1034406298828650.01545808692033COADMale-baised eQTL
rs39328chr7:103804531:C:T--0.05651287363953320.0156019496609832COADMale-baised eQTL
rs745539chr7:103782095:T:A--0.05683049668113650.0158015704556028COADMale-baised eQTL
rs1880467chr7:103862412:T:G-0.08490251397739260.0159116107985533COADMale-baised eQTL
rs13243402chr7:121816456:A:C-0.05734320219876790.0166875802643242COADMale-baised eQTL
rs10236038chr7:121820798:C:G-0.05786242654739370.0167201536943043COADMale-baised eQTL
rs12111892chr7:121824699:C:T-0.05719522996111250.0172681188843819COADMale-baised eQTL
rs10236172chr7:121820945:C:A-0.05713134647652980.017465751469574COADMale-baised eQTL
rs42168chr7:106840204:C:T-0.06620028159564630.0176243921309678COADMale-baised eQTL
rs73201836chr7:106634947:C:A-0.1225776836938710.0181830166185144COADMale-baised eQTL
rs13243284chr7:103776692:A:C--0.05530950910393220.0186584085015709COADMale-baised eQTL
rs11496125chr7:103777110:C:T--0.05530950910393220.0186584085015709COADMale-baised eQTL
rs2299383chr7:103778399:C:T--0.05507037233334890.0191492379731763COADMale-baised eQTL
rs28760395chr7:103863011:C:T-0.08580379601508220.0195233018597869COADMale-baised eQTL
rs112252916chr7:103865023:G:A-0.08580379601508220.0195233018597869COADMale-baised eQTL
rs7800259chr7:121765780:C:T-0.05844778369444610.0199118060279128COADMale-baised eQTL
rs10238474chr7:121817323:T:C-0.05553093168132270.0204079701496809COADMale-baised eQTL
rs4440548chr7:103884455:T:A-0.08441387059514610.0210634798126444COADMale-baised eQTL
rs2299381chr7:103777552:T:C--0.05426399747862650.0222562933177152COADMale-baised eQTL
rs12375196chr7:103776094:C:A--0.05423144310964680.0223775359549961COADMale-baised eQTL
rs3801380chr7:121874823:A:G-0.08216358293618580.0224647155070386COADMale-baised eQTL
rs200459646chr7:113429476:T:G-0.07657997623312570.0227068718709736COADMale-baised eQTL
rs11767714chr7:113435464:A:G-0.07657997623312570.0227068718709736COADMale-baised eQTL
rs56328232chr7:113440847:T:G-0.07657997623312570.0227068718709736COADMale-baised eQTL
rs73202209chr7:113441534:T:C-0.07657997623312570.0227068718709736COADMale-baised eQTL
rs6966138chr7:121865783:G:A-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs6965735chr7:121865793:A:G-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs138601001chr7:121867381:C:A-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs149266619chr7:121867464:G:A-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs3757551chr7:121871034:G:A-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs740965chr7:121873507:T:G-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs75052642chr7:121873945:G:A-0.08193302859980320.0230033287379447COADMale-baised eQTL
rs11983105chr7:121798965:A:G-0.05801409927698630.0240545716433092COADMale-baised eQTL
rs11766616chr7:121799663:G:C-0.05801409927698630.0240545716433092COADMale-baised eQTL
rs262350chr7:103780261:T:C--0.05462437321966080.0242423454155335COADMale-baised eQTL
rs10238164chr7:121768547:A:T-0.05716566093271460.0244267604524147COADMale-baised eQTL
rs4731038chr7:121802667:A:G-0.05742503964483450.0252043408745525COADMale-baised eQTL
rs77810251chr7:121864095:G:A-0.08071787641951440.0254336445451131COADMale-baised eQTL
rs28421425chr7:121831664:C:T-0.05312127771948190.0279853623209895COADMale-baised eQTL
rs17369598chr7:122325383:A:G-0.06472432022799920.0287780540640232COADMale-baised eQTL
rs28418870chr7:103849639:T:C-0.08226620773691450.0288350377424715COADMale-baised eQTL
rs28529490chr7:103849679:A:G-0.08226620773691450.0288350377424715COADMale-baised eQTL
rs10250074chr7:103852812:A:T-0.08226620773691450.0288350377424715COADMale-baised eQTL
rs13231796chr7:121813335:C:T-0.05479534005449850.0288422717400323COADMale-baised eQTL
rs58835721chr7:103899399:G:T--0.05361342901328420.0295051033320169COADMale-baised eQTL
rs7794283chr7:122327494:T:C-0.06430851063622350.0303378558620554COADMale-baised eQTL
rs176512chr7:106120714:G:A--0.10335182040510.0306912844257953COADMale-baised eQTL
rs2109767chr7:121856207:T:C-0.07890674402970310.0314406582307035COADMale-baised eQTL
rs74755112chr7:121859315:G:C-0.07890674402970310.0314406582307035COADMale-baised eQTL
rs57310861chr7:103899449:A:G--0.05270451088819440.0320171158956934COADMale-baised eQTL
rs56391012chr7:113456862:C:G-0.07484727181202670.0336008799906647COADMale-baised eQTL
rs2283044chr7:107800108:G:A-0.04841044728168760.0336796561662176COADMale-baised eQTL
rs6972380chr7:121766570:A:G-0.05495415369338250.0339767021924494COADMale-baised eQTL
rs6964759chr7:121774073:T:C-0.05485349170210380.0344866253958537COADMale-baised eQTL
rs1544614chr7:121775126:G:T-0.05485349170210380.0344866253958537COADMale-baised eQTL
rs7782005chr7:111389508:C:T-0.06972208338335980.0345916043496303COADMale-baised eQTL
rs1544615chr7:121775130:T:C-0.05505946460267220.0350406035351725COADMale-baised eQTL
rs10458284chr7:103899906:T:C--0.05205236216127070.0350773458588446COADMale-baised eQTL
rs73202213chr7:113453385:T:C-0.07471767768387830.0354614709387251COADMale-baised eQTL
rs60947287chr7:113418397:T:C-0.07196410766934330.0361957799005466COADMale-baised eQTL
rs2215791chr7:121786196:A:T-0.05490053957277640.0385182394644868COADMale-baised eQTL
rs79258300chr7:106118773:T:A--0.09824982031233530.039341381880765COADMale-baised eQTL
rs200380995chr7:106118775:T:C--0.09824982031233530.039341381880765COADMale-baised eQTL
rs201454589chr7:106118778:G:T--0.09824982031233530.039341381880765COADMale-baised eQTL
rs111683391chr7:106118780:G:A--0.09824982031233530.039341381880765COADMale-baised eQTL
rs10226423chr7:121773231:C:G-0.05362401332842360.0398518944904646COADMale-baised eQTL
rs10260005chr7:103900657:A:G--0.05101759885544090.0399469093861655COADMale-baised eQTL
rs28860292chr7:103901129:G:A--0.05101759885544090.0399469093861655COADMale-baised eQTL
rs28885406chr7:103901134:T:C--0.05101759885544090.0399469093861655COADMale-baised eQTL
rs28770307chr7:103901224:G:C--0.05101759885544090.0399469093861655COADMale-baised eQTL
rs3915122chr7:103901352:T:C--0.05101759885544090.0399469093861655COADMale-baised eQTL
rs202214237chr7:106118774:T:C--0.09782237093623470.0407380731214609COADMale-baised eQTL
rs201693264chr7:106118776:G:T--0.09782237093623470.0407380731214609COADMale-baised eQTL
rs10262903chr7:106805128:A:G-0.05043559590502450.0452543704110957COADMale-baised eQTL
rs9987028chr7:103904418:A:G--0.05059239999184070.0453031139388053COADMale-baised eQTL
rs3898844chr7:103901581:A:C--0.05000043100022820.0453575432048841COADMale-baised eQTL
rs3898845chr7:103901613:T:C--0.05000043100022820.0453575432048841COADMale-baised eQTL
rs176511chr7:106118996:G:A--0.0971595189662060.0473897304970941COADMale-baised eQTL
rs2905274chr7:112691741:G:A--0.05789823160237420.0487499587822868COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000164603
CpG Site: cg26951888
Position to Gene: gene
Male Effect: -
Female Effect: -0.455793145638905

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg26951888chr7:112931421gene-0.4557931456389053.42092505090921e-29-0.69053379360241912.4045901060127595e-34LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of C7orf60

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource