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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000138231

Summary for DBR1

check button Gene summary

Gene informationEnsembl ID

ENSG00000138231

Gene symbol

DBR1

Gene namedebranching RNA lariats 1
HGNC

15594

Entrez ID

51163

Gene typeprotein_coding
SynonymsDBR1|
UniProtAcc

Q9UK59


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for DBR1

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

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Sex-biased somatic mutation for DBR1

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for DBR1

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
LUSCcg00933443chr3:138173590CGI:chr3:138174568-138174966promoter,exon,CDS,gene body7.80e-019.35e-01-3.79e+001.50e-048.37e-04-1.55e-01
BLCAcg00933443chr3:138173590CGI:chr3:138174568-138174966promoter,exon,CDS,gene body8.16e-019.29e-01-3.51e+004.46e-041.21e-03-1.13e-01
CHOLcg00933443chr3:138173590CGI:chr3:138174568-138174966promoter,exon,CDS,gene body7.78e-019.24e-01-2.65e+007.96e-031.92e-02-1.46e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

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Exon skipping events with PSI in TCGA for DBR1

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
LUSCexon_skip_3888398.82e-019.92e-01-6.86e+006.92e-128.20e-11-1.10e-01

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for DBR1

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for DBR1

check buttonTFs related to DBR1.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
CHOLZNF496DBR13.83e+009.80e-012.65e+004.07e-03Male-biased
SARCZNF235DBR14.62e+009.87e-014.01e+007.24e-03Male-biased
SARCZNF287DBR14.46e+009.83e-013.88e+008.86e-03Male-biased

check buttonDBR1 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for DBR1

check buttonRBPs related to ES in DBR1.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
BRCAKHDRBS3exon_skip_3888398.03e+009.80e-017.47e+001.13e-02Male-biased
READRBMS1exon_skip_3888409.76e+001.13e-021.01e+019.87e-01Female-biased
SKCMFusip1exon_skip_3888457.23e+009.82e-016.82e+005.76e-03Male-biased

check buttonDBR1 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs10804628chr3:134176778:C:T-0.2586192556004360.00904656555079033LIHCFemale-baised eQTL
rs79350889chr3:134186919:G:T-0.2586192556004360.00904656555079033LIHCFemale-baised eQTL
rs75616514chr3:134149193:A:G-0.2395369561643840.0227986891092863LIHCFemale-baised eQTL
rs3773757chr3:138357175:G:A-0.2433669290821240.028525318739007LIHCFemale-baised eQTL
rs78338426chr3:134145669:A:G-0.2247007080265620.0409660384401799LIHCFemale-baised eQTL
rs74694923chr3:134145692:A:G-0.2247007080265620.0409660384401799LIHCFemale-baised eQTL
rs4588357chr3:134154258:G:T-0.2546238984206650.0439105471124791LIHCFemale-baised eQTL
rs12488092chr3:134130003:T:C-0.2216373302204990.04867487378158LIHCFemale-baised eQTL
rs977026chr3:135309600:C:T-0.1308460459223970.0233003587121639STADFemale-baised eQTL
rs35361065chr3:135291411:C:T-0.1104159883353730.0445534564549493STADFemale-baised eQTL
rs3804659chr3:146123181:C:G--0.07047990955852020.0454058746047926LGGFemale-baised eQTL
rs73220490chr3:131771879:G:A-0.103464429367130.0218675476180995LUADFemale-baised eQTL
rs73220481chr3:131767753:C:A-0.1030693849760310.0227894967863921LUADFemale-baised eQTL
rs17294951chr3:131768809:T:G-0.1030693849760310.0227894967863921LUADFemale-baised eQTL
rs73220485chr3:131768979:T:C-0.1030693849760310.0227894967863921LUADFemale-baised eQTL
rs73220493chr3:131774681:G:A-0.1030693849760310.0227894967863921LUADFemale-baised eQTL
rs17360876chr3:131776416:C:G-0.1030693849760310.0227894967863921LUADFemale-baised eQTL
rs17295091chr3:131777147:G:T-0.1030693849760310.0227894967863921LUADFemale-baised eQTL
rs73222304chr3:131784892:C:T-0.1029323316213950.0258452879110433LUADFemale-baised eQTL
rs73220478chr3:131763694:T:C-0.1018021835198020.0263700484395415LUADFemale-baised eQTL
rs73222308chr3:131790580:C:T-0.1027703246885080.0288162803764472LUADFemale-baised eQTL
rs73220477chr3:131763139:T:C-0.09721437051005980.0389385894036539LUADFemale-baised eQTL
rs17343355chr3:128247948:C:T-0.08129361607587250.00927344364900816COADFemale-baised eQTL
rs62271749chr3:128234305:G:A-0.08036591356617530.00954289053936393COADFemale-baised eQTL
rs12637873chr3:128235126:G:A-0.08036591356617530.00954289053936393COADFemale-baised eQTL
rs62273567chr3:128269232:T:C-0.0792819833122440.0122180426265546COADFemale-baised eQTL
rs56343214chr3:139529151:C:A-0.102524723374790.03184329744212COADFemale-baised eQTL
rs4683502chr3:139530141:C:T-0.102524723374790.03184329744212COADFemale-baised eQTL
rs893703chr3:139531807:A:G-0.09420225739661430.0499920696066171COADFemale-baised eQTL
rs3772868chr3:139532543:G:A-0.09420225739661430.0499920696066171COADFemale-baised eQTL
rs3821543chr3:139533220:C:A-0.09420225739661430.0499920696066171COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs1613698chr3:146128541:T:A--0.04087481868793530.0303922499361488KIRCMale-baised eQTL
rs4611785chr3:146067810:C:G--0.04370534180845020.0418880466831151KIRCMale-baised eQTL
rs1197295chr3:133390958:T:C--0.08333602734448790.0108152669662146LUADMale-baised eQTL
rs73209853chr3:133382218:G:A-0.08785874778476310.0145301370927116LUADMale-baised eQTL
rs76318466chr3:133395246:C:T-0.08769441145438740.0148598362076126LUADMale-baised eQTL
rs73211831chr3:133398265:T:C-0.08769441145438740.0148598362076126LUADMale-baised eQTL
rs73211832chr3:133399728:C:T-0.08769441145438740.0148598362076126LUADMale-baised eQTL
rs111876853chr3:133381397:C:T-0.08740282467126430.0157216024724503LUADMale-baised eQTL
rs113384944chr3:133392313:C:T-0.08340100767658820.0251072346516552LUADMale-baised eQTL
rs73209829chr3:133369251:G:A-0.07926101073727430.025486844711177LUADMale-baised eQTL
rs74477447chr3:133367390:T:C-0.07906813700965730.0263024276288924LUADMale-baised eQTL
rs34111099chr3:133379962:C:T-0.08081055529250040.0324939191646773LUADMale-baised eQTL
rs73010160chr3:145146935:A:T-0.05730438521141230.0326329331723945LUADMale-baised eQTL
rs73209818chr3:133361576:C:T-0.07678485104071830.0420009167028642LUADMale-baised eQTL
rs73209820chr3:133362627:A:G-0.07678485104071830.0420009167028642LUADMale-baised eQTL
rs75210407chr3:133363487:C:T-0.07678485104071830.0420009167028642LUADMale-baised eQTL
rs11718154chr3:133366469:G:T-0.07678485104071830.0420009167028642LUADMale-baised eQTL
rs73209824chr3:133366810:T:A-0.07678485104071830.0420009167028642LUADMale-baised eQTL
rs35959290chr3:144006724:T:A-0.04759371802961330.0472949013495182COADMale-baised eQTL
rs6789065chr3:143421586:A:T-0.04581049958467840.0499177898732048COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type
exon_skip_388839chr3:138163777:138163858In-framers3856632chr3:138067854:G:ADistant downstream0.02658328939962970.0434770482770118LUADFemale-baised sQTL

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type
exon_skip_388839chr3:138163777:138163858In-framers73219036chr3:137190004:G:ADistant downstream-0.04184369476199890.000561196518598936LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers73219042chr3:137210079:T:CDistant downstream-0.03353133674087430.009449004729881LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers181898098chr3:137199041:G:ADistant downstream-0.03465569478764880.0105614842961508LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers1461514chr3:137226203:G:TDistant downstream-0.03130505010784760.0173018765080144LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers1600131chr3:137358146:G:ADistant downstream-0.0291390054770730.036155555245059LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers2582288chr3:137183114:G:ADistant downstream-0.03138144657685490.0399718928575697LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers73219080chr3:137303893:A:CDistant downstream-0.02843340609532520.046859695022158LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers73219081chr3:137307451:C:TDistant downstream-0.02843340609532520.046859695022158LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers77951515chr3:137314509:C:TDistant downstream-0.02843340609532520.046859695022158LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers1478316chr3:137384339:G:ADistant downstream0.02827303835684620.047035436399242LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers9861419chr3:137385072:C:TDistant downstream0.02827303835684620.047035436399242LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers9824132chr3:137385401:A:TDistant downstream0.02827303835684620.047035436399242LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers4499547chr3:137391502:C:ADistant downstream0.02845711608275070.0473560890030559LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers4499548chr3:137391510:C:TDistant downstream0.02845711608275070.0473560890030559LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers4277633chr3:137391512:T:GDistant downstream0.02845711608275070.0473560890030559LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers2199620chr3:137392977:C:ADistant downstream0.02845711608275070.0473560890030559LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers7628801chr3:137355236:C:TDistant downstream0.02826851104009890.0475049345983658LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers6796260chr3:137364324:C:TDistant downstream0.02826851104009890.0475049345983658LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers7624491chr3:137366299:A:GDistant downstream0.02826851104009890.0475049345983658LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers1605038chr3:137366645:A:TDistant downstream0.02826851104009890.0475049345983658LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers141494471chr3:137380654:A:CDistant downstream0.02826851104009890.0475049345983658LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers3845929chr3:137333795:T:CDistant downstream-0.02824425648595840.0499403460003664LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers3845930chr3:137333941:G:ADistant downstream-0.02824425648595840.0499403460003664LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers16844710chr3:137335219:A:GDistant downstream-0.02824425648595840.0499403460003664LUADMale-baised sQTL
exon_skip_388839chr3:138163777:138163858In-framers9842918chr3:138117511:G:ADistant downstream-0.02599768720939680.0091625966343167HNSCMale-baised sQTL

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription
sQTM boxplot analysisEX ID: exon_skip_388839
CpG Site: cg08932381
Position to EX: Distant upstream
Male Effect: -
Female Effect: 0.228921154627914

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type
exon_skip_388839chr3:138163777:138163858cg08932381chr3:138360147Distant upstream0.2289211546279141.62501469930569e-070.444265141259693634.6677247716831945e-07In-frameSARC

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of DBR1

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000138231DBR1C0002736Amyotrophic Lateral Sclerosis1CTD_human
ENSG00000138231DBR1C0393554Amyotrophic Lateral Sclerosis With Dementia1CTD_human
ENSG00000138231DBR1C0543859Amyotrophic Lateral Sclerosis, Guam Form1CTD_human