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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000135926

Summary for TMBIM1

check button Gene summary

Gene informationEnsembl ID

ENSG00000135926

Gene symbol

TMBIM1

Gene nametransmembrane BAX inhibitor motif containing 1
HGNC

23410

Entrez ID

64114

Gene typeprotein_coding
SynonymsTMBIM1|PP1201|RECS1|LFG3
UniProtAcc

Q969X1


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for TMBIM1

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
TMBIM18.87e+03-1.12e+006.18e-02-1.81e+012.30e-734.52e-72BRCA

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Sex-biased somatic mutation for TMBIM1

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for TMBIM1

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg25353281chr2:218290655CGI:chr2:218292254-218292657promoter,gene body6.74e-018.39e-01-3.04e+002.33e-031.47e-02-1.65e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
LUADcg25353281chr2:218290655CGI:chr2:218292254-218292657promoter,gene body4.19e-012.69e-012.73e+006.29e-039.07e-031.50e-01
LUSCcg24533564chr2:218290745CGI:chr2:218292254-218292657promoter,gene body4.25e-015.26e-01-3.16e+001.60e-033.58e-03-1.01e-01
BLCAcg25353281chr2:218290655CGI:chr2:218292254-218292657promoter,gene body2.95e-014.17e-01-2.62e+008.68e-031.26e-02-1.22e-01
KIRPcg25353281chr2:218290655CGI:chr2:218292254-218292657promoter,gene body3.98e-012.19e-013.14e+001.68e-032.83e-031.79e-01
KIRPcg24533564chr2:218290745CGI:chr2:218292254-218292657promoter,gene body6.48e-015.47e-013.28e+001.03e-031.86e-031.01e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg25353281chr2:218290655CGI:chr2:218292254-218292657promoter,gene body6.74e-014.89e-017.25e+004.23e-131.34e-121.85e-01

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Exon skipping events with PSI in TCGA for TMBIM1

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for TMBIM1

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for TMBIM1

check buttonTFs related to TMBIM1.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
READGLIS1TMBIM14.22e+009.82e-013.27e+005.54e-03Male-biased
READMYCNTMBIM14.09e+009.82e-012.82e+001.67e-03Male-biased
READPLAGL2TMBIM14.06e+009.83e-011.97e+007.52e-05Male-biased

check buttonTMBIM1 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for TMBIM1

check buttonRBPs related to ES in TMBIM1.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
LIHCHNRNPH2exon_skip_3467306.92e+009.84e-016.11e+006.09e-04Male-biased
LUSCBRUNOL6exon_skip_3467326.73e+002.39e-037.24e+009.86e-01Female-biased
COADHNRNPH2exon_skip_3467297.18e+009.87e-016.55e+006.74e-04Male-biased
COADHNRNPH2exon_skip_3467307.39e+009.88e-016.79e+009.50e-04Male-biased
COADHNRNPH2exon_skip_3467327.16e+009.86e-016.63e+001.50e-03Male-biased
DLBChnRNPKexon_skip_3466928.88e+001.41e-029.19e+009.82e-01Female-biased
DLBCYB-1exon_skip_3467009.87e+009.89e-019.53e+009.09e-03Male-biased
CHOLCNOT4exon_skip_3467217.18e+008.55e-037.60e+009.81e-01Female-biased
CHOLZC3H10exon_skip_3467216.83e+009.83e-016.14e+001.18e-03Male-biased
LGGHNRNPH2exon_skip_3467306.12e+001.47e-036.64e+009.82e-01Female-biased
GBMHNRNPH2exon_skip_3467306.84e+009.83e-016.35e+002.09e-03Male-biased
PAADBRUNOL6exon_skip_3467296.51e+005.12e-036.87e+009.80e-01Female-biased
KIRCZC3H10exon_skip_3467216.43e+001.62e-036.92e+009.84e-01Female-biased

check buttonTMBIM1 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs12474265chr2:215215405:C:A-0.1386036157420170.0130947832587914LIHCFemale-baised eQTL
rs7424551chr2:215214440:G:A-0.135265953584710.0198660756171915LIHCFemale-baised eQTL
rs4315521chr2:215220303:C:T-0.135265953584710.0198660756171915LIHCFemale-baised eQTL
rs35183728chr2:215237188:T:C-0.129150887541010.0281942675813711LIHCFemale-baised eQTL
rs4672860chr2:217924965:A:G-0.2377924151577790.0473295488390584LIHCFemale-baised eQTL
rs1552161chr2:212504504:A:G-0.1841476242159010.0118497023102104BLCAFemale-baised eQTL
rs201643310chr2:223016427:C:T-0.1920910727164690.0499890944218518BLCAFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs17701917chr2:213575082:T:C-0.1063849873261770.00214280985909199LUADMale-baised eQTL
rs77999946chr2:213398963:A:G-0.1041795264104490.00247745085900355LUADMale-baised eQTL
rs3770154chr2:221473195:G:T--0.09623597043615830.00014396381840662COADMale-baised eQTL
rs10933018chr2:223804712:T:G-0.07657759006185150.00348688157496635COADMale-baised eQTL
rs28631964chr2:223809819:C:A-0.07572465170838990.00401723688365064COADMale-baised eQTL
rs11884160chr2:223808862:G:A-0.07454140146494020.00476564257833225COADMale-baised eQTL
rs17243807chr2:223810151:G:A-0.07389723751693170.00505354796177142COADMale-baised eQTL
rs28599833chr2:223809885:C:A-0.07198134534929310.00695995698245286COADMale-baised eQTL
rs67899857chr2:223810021:C:T-0.07198134534929310.00695995698245286COADMale-baised eQTL
rs13416180chr2:223810831:A:C-0.07122461509159130.00752923409648244COADMale-baised eQTL
rs7576099chr2:223811680:G:C-0.07122461509159130.00752923409648244COADMale-baised eQTL
rs13390749chr2:223810591:G:A-0.06937604118708160.0102062734606633COADMale-baised eQTL
rs7605287chr2:223812054:A:G-0.06835742562989670.0115847621092672COADMale-baised eQTL
rs6757973chr2:223812498:A:T-0.06835742562989670.0115847621092672COADMale-baised eQTL
rs6730212chr2:223812921:G:A-0.06835742562989670.0115847621092672COADMale-baised eQTL
rs6436436chr2:223812155:A:T-0.06694896741805390.0130578324096743COADMale-baised eQTL
rs62185132chr2:223818436:G:A-0.06744265548157810.0135080988687312COADMale-baised eQTL
rs12467861chr2:223808298:T:C-0.06622760661406450.0142264784033259COADMale-baised eQTL
rs10197448chr2:223819812:T:C-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs13407046chr2:223820251:C:T-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs28378706chr2:223820617:T:C-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs28398161chr2:223820644:T:C-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs10167473chr2:223821483:A:G-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs10191265chr2:223821520:C:T-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs1533609chr2:223821692:G:A-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs1533608chr2:223821811:A:G-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs1533607chr2:223822001:A:T-0.06695765736701180.0143095932632915COADMale-baised eQTL
rs7592479chr2:223817649:T:A-0.06696062257410440.0147238327936006COADMale-baised eQTL
rs10193173chr2:223817950:T:C-0.06696062257410440.0147238327936006COADMale-baised eQTL
rs10180797chr2:223817960:G:A-0.06696062257410440.0147238327936006COADMale-baised eQTL
rs10180900chr2:223818042:G:A-0.06696062257410440.0147238327936006COADMale-baised eQTL
rs7587119chr2:223814549:G:A-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs13408145chr2:223815234:C:T-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs13382611chr2:223815258:A:G-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs7577788chr2:223817015:C:T-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs7578072chr2:223817088:G:T-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs7604417chr2:223817345:A:G-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs10180835chr2:223818144:C:T-0.06666047975993020.0151609453826333COADMale-baised eQTL
rs6752410chr2:223823349:G:A-0.06563528977154210.016519913916354COADMale-baised eQTL
rs13421277chr2:223823993:C:T-0.06563528977154210.016519913916354COADMale-baised eQTL
rs13421452chr2:223824027:G:A-0.06563528977154210.016519913916354COADMale-baised eQTL
rs12373615chr2:223833720:A:G-0.06424285760528870.0170113630456723COADMale-baised eQTL
rs62190997chr2:226805496:T:A--0.1000217795495660.0173511757221998COADMale-baised eQTL
rs62190998chr2:226806519:A:G--0.1000217795495660.0173511757221998COADMale-baised eQTL
rs56105950chr2:226808445:T:C--0.1000217795495660.0173511757221998COADMale-baised eQTL
rs10933162chr2:226909424:T:A--0.1145374567167430.0180263076559309COADMale-baised eQTL
rs1560253chr2:226815097:T:C--0.09935471051265610.0186228446104762COADMale-baised eQTL
rs2396427chr2:226815395:A:G--0.09935471051265610.0186228446104762COADMale-baised eQTL
rs6757133chr2:223824782:G:A-0.06356812287320070.0222593550737405COADMale-baised eQTL
rs10174440chr2:223816397:C:T-0.0635782018102810.0227949944709844COADMale-baised eQTL
rs62191054chr2:226904936:C:T--0.1106419221465770.0239242048169607COADMale-baised eQTL
rs9288583chr2:223835122:T:C-0.06302918832542850.0244687154325317COADMale-baised eQTL
rs12466101chr2:211203067:G:A--0.06899093095644230.0252164277998418COADMale-baised eQTL
rs10192352chr2:219737117:G:C--0.06446433038064310.0252794459344651COADMale-baised eQTL
rs6731418chr2:223825046:A:G-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs10181119chr2:223825743:A:G-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs6746917chr2:223827179:G:A-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs10177420chr2:223827575:G:A-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs28561834chr2:223829124:G:T-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs28430762chr2:223829125:C:T-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs11897973chr2:223829328:T:C-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs6436439chr2:223830924:C:T-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs12694622chr2:223832234:G:A-0.06273975129640540.0253777021742565COADMale-baised eQTL
rs62191000chr2:226810450:G:C--0.09685400331603070.0262238236385945COADMale-baised eQTL
rs16822696chr2:226811039:T:C--0.09685400331603070.0262238236385945COADMale-baised eQTL
rs62191001chr2:226811066:C:G--0.09685400331603070.0262238236385945COADMale-baised eQTL
rs62191002chr2:226811304:A:C--0.09685400331603070.0262238236385945COADMale-baised eQTL
rs62191003chr2:226811440:T:C--0.09685400331603070.0262238236385945COADMale-baised eQTL
rs62191004chr2:226811599:A:G--0.09685400331603070.0262238236385945COADMale-baised eQTL
rs16845555chr2:211202396:C:G--0.06838989228539120.0274849341135649COADMale-baised eQTL
rs13402515chr2:223828936:G:A-0.06236146195260950.0275244772708909COADMale-baised eQTL
rs56085860chr2:226813895:T:C--0.09619671843554220.0279804586312041COADMale-baised eQTL
rs62191006chr2:226814466:C:A--0.09619671843554220.0279804586312041COADMale-baised eQTL
rs12373774chr2:223833840:C:T-0.06200669187855680.0280284308955887COADMale-baised eQTL
rs7600912chr2:223814548:T:C-0.06214622964318060.0317147093722186COADMale-baised eQTL
rs10200716chr2:223814930:T:C-0.06092670528942920.0347531714937182COADMale-baised eQTL
rs6436437chr2:223812637:T:C-0.06081468540778940.0352244115529554COADMale-baised eQTL
rs7591771chr2:223816993:T:C-0.0611062096149080.0354603212562444COADMale-baised eQTL
rs77224808chr2:211195618:C:G--0.07977548744064070.0380289919956968COADMale-baised eQTL
rs12694318chr2:214136191:A:G-0.06383828538853840.0389415937550118COADMale-baised eQTL
rs6722305chr2:227634141:G:T--0.07954681519129750.0410748687052846COADMale-baised eQTL
rs76231041chr2:226805223:G:A--0.09699851555517840.0413506337077859COADMale-baised eQTL
rs13011568chr2:214060912:T:C-0.06826414427334770.0425132716383364COADMale-baised eQTL
rs59004229chr2:227632753:T:A-0.08351253872019280.046836776182424COADMale-baised eQTL
rs1562297chr2:223816910:C:T-0.05839100066351710.0474734184417566COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000135926
CpG Site: cg03627290
Position to Gene: gene
Male Effect: -0.170837430589648
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg03627290chr2:218290525gene-0.1708374305896482.69035594171499e-21-0.62017478154879884.3079624879458025e-25LUAD

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of TMBIM1

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000135926TMBIM1C0023893Liver Cirrhosis, Experimental1CTD_human