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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000132000

Summary for PODNL1

check button Gene summary

Gene informationEnsembl ID

ENSG00000132000

Gene symbol

PODNL1

Gene namepodocan like 1
HGNC

26275

Entrez ID

79883

Gene typeprotein_coding
SynonymsPODNL1|FLJ23447|SLRR5B
UniProtAcc

Q6PEZ8


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for PODNL1

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
PODNL13.92e+022.03e+005.13e-013.95e+007.75e-053.55e-04BLCA
PODNL18.34e+021.74e+005.15e-013.38e+007.17e-044.86e-03ESCA

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
PODNL16.76e+021.07e+002.88e-013.72e+002.02e-041.07e-03HNSC
PODNL12.77e+022.41e+004.33e-015.56e+002.73e-083.78e-07READ

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Sex-biased somatic mutation for PODNL1

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for PODNL1

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg10760452chr19:13953776CGI:chr19:13951973-13952791promoter7.88e-016.88e-014.71e+002.52e-064.50e-061.00e-01
BRCAcg25264101chr19:13953562CGI:chr19:13951973-13952791promoter4.90e-013.34e-019.96e+002.21e-231.61e-221.56e-01
HNSCcg26969888chr19:13953442CGI:chr19:13951973-13952791promoter2.40e-011.39e-012.50e+001.24e-022.09e-021.01e-01
HNSCcg25264101chr19:13953562CGI:chr19:13951973-13952791promoter3.99e-012.98e-012.38e+001.75e-022.55e-021.01e-01
KIRPcg26969888chr19:13953442CGI:chr19:13951973-13952791promoter2.95e-011.84e-012.15e+003.13e-023.63e-021.10e-01

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Exon skipping events with PSI in TCGA for PODNL1

∗Please access ExonSkipDB for exon skipping annotation.
check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for PODNL1

∗Please access CAeditome for RNA editing annotation.
check buttonLandscape of RNA editing events across multiple cancer types.
ED heatmap

check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre
SKCMPODNL1-013chr19_13949445_-2.13e-011.40e-012.40e+001.64e-024.90e-027.25e-02

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for PODNL1

check buttonTFs related to PODNL1.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonPODNL1 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for PODNL1

check buttonRBPs related to ES in PODNL1.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonPODNL1 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type
ENSG00000132000AC016877.3,hsa-mir-338,PODNL1Female-specific ceRNATCGA-KICH
ENSG00000132000ITGB2-AS1,hsa-mir-338,PODNL1Female-specific ceRNATCGA-KICH
ENSG00000132000AC016026.1,hsa-mir-338,PODNL1Female-specific ceRNATCGA-KICH
ENSG00000132000AC108134.3,hsa-mir-431,PODNL1Female-specific ceRNATCGA-KICH
ENSG00000132000AC025048.4,hsa-mir-431,PODNL1Female-specific ceRNATCGA-KICH
ENSG00000132000AC016026.1,hsa-mir-431,PODNL1Female-specific ceRNATCGA-KICH

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs113737643chr19:12193739:A:T-0.4555495678647986.28375056111064e-06GBMFemale-baised eQTL
rs8104674chr19:12258691:G:A-0.3932635401608330.0127607769158543GBMFemale-baised eQTL
rs34009421chr19:12292895:C:T-0.3932635401608330.0127607769158543GBMFemale-baised eQTL
rs12165117chr19:20662785:G:A-0.07831526516570180.0331237881910115COADFemale-baised eQTL
rs12165116chr19:20662875:A:G-0.07831526516570180.0331237881910115COADFemale-baised eQTL
rs74720709chr19:10985034:T:C-0.07708875959227810.0347007227758214COADFemale-baised eQTL
rs78732262chr19:10985220:T:C-0.07708875959227810.0347007227758214COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs11086022chr19:16075220:G:A-0.04581795692656950.0414359437001551HNSCMale-baised eQTL
rs10418402chr19:16074609:G:T-0.04537313793838910.0438026905236226HNSCMale-baised eQTL
rs8113101chr19:16075655:G:T-0.04551867727688290.046417525107638HNSCMale-baised eQTL
rs73003793chr19:16073999:G:C-0.04496977994232180.0485376477112128HNSCMale-baised eQTL
rs10414221chr19:16074378:C:G-0.04496977994232180.0485376477112128HNSCMale-baised eQTL
rs10426103chr19:16074561:T:C-0.04496977994232180.0485376477112128HNSCMale-baised eQTL
rs12462208chr19:5543891:A:G-0.1352283998995220.00593738971132683SARCMale-baised eQTL
rs8102322chr19:16978210:G:C-0.1114392834633640.0137117093525903SARCMale-baised eQTL
rs17304401chr19:5495186:G:C-0.1089902393985350.0402987818893371SARCMale-baised eQTL
rs73013012chr19:10133878:G:A-0.1393835646354650.00050639417460976COADMale-baised eQTL
rs73502593chr19:17045602:A:G-0.1136251725281880.000520811780709723COADMale-baised eQTL
rs138341216chr19:10123934:G:C-0.1388335999105360.000550736853608355COADMale-baised eQTL
rs2228613chr19:10154917:G:T-0.1270124308259560.00207749987120899COADMale-baised eQTL
rs142630834chr19:10160847:A:G-0.1270124308259560.00207749987120899COADMale-baised eQTL
rs146278326chr19:10164508:G:A-0.1270124308259560.00207749987120899COADMale-baised eQTL
rs117070319chr19:18656784:A:G-0.1145199193297360.0106809263946895COADMale-baised eQTL
rs118150194chr19:18655392:G:C-0.1140201709787290.0113894073761221COADMale-baised eQTL
rs117009988chr19:18636238:G:A-0.1050679999691430.0161095398374846COADMale-baised eQTL
rs79342923chr19:10494960:G:T-0.09418944614438910.0172782171064082COADMale-baised eQTL
rs74598573chr19:18635627:G:A-0.09860619137014740.0186626109348437COADMale-baised eQTL
rs74568449chr19:21732108:T:G-0.1172924593924060.0216097642360062COADMale-baised eQTL
rs1912579chr19:21799550:A:G-0.1143747524319330.0223873040600625COADMale-baised eQTL
rs76227891chr19:21818623:G:A-0.1181847492950770.0225947943446036COADMale-baised eQTL
rs75458430chr19:21818912:T:C-0.1181847492950770.0225947943446036COADMale-baised eQTL
rs79720979chr19:21819432:T:A-0.1181847492950770.0225947943446036COADMale-baised eQTL
rs76366771chr19:21827523:G:A-0.1181847492950770.0225947943446036COADMale-baised eQTL
rs111446979chr19:21827730:C:T-0.1181847492950770.0225947943446036COADMale-baised eQTL
rs146565576chr19:21833369:C:T-0.1181847492950770.0225947943446036COADMale-baised eQTL
rs75897063chr19:21843662:G:A-0.1180556935500610.0229375314538347COADMale-baised eQTL
rs75162832chr19:21844236:C:T-0.1180556935500610.0229375314538347COADMale-baised eQTL
rs78487711chr19:21846754:G:T-0.1180556935500610.0229375314538347COADMale-baised eQTL
rs76943102chr19:21850628:T:C-0.1180556935500610.0229375314538347COADMale-baised eQTL
rs78138759chr19:21851172:A:G-0.1180556935500610.0229375314538347COADMale-baised eQTL
rs76875532chr19:21853597:G:C-0.1180556935500610.0229375314538347COADMale-baised eQTL
rs295385chr19:23347215:T:A--0.06202552734491250.0237864913541602COADMale-baised eQTL
rs295411chr19:23328191:A:T--0.06121622619142730.0266828206092597COADMale-baised eQTL
rs295393chr19:23345060:T:C--0.06121622619142730.0266828206092597COADMale-baised eQTL
rs10405228chr19:21775242:G:A-0.1203542089723810.0278770815579307COADMale-baised eQTL
rs874492chr19:7767115:A:T-0.05697775696010460.0278941593153435COADMale-baised eQTL
rs113837245chr19:21704915:A:G-0.1158179899989490.027962709167325COADMale-baised eQTL
rs295390chr19:23345548:T:C--0.06086534258523410.0284521727879424COADMale-baised eQTL
rs12973739chr19:23316980:A:G--0.06128054239973730.0285743392658594COADMale-baised eQTL
rs2434383chr19:23320643:G:T--0.06128054239973730.0285743392658594COADMale-baised eQTL
rs12984965chr19:23324885:C:T--0.06128054239973730.0285743392658594COADMale-baised eQTL
rs607168chr19:23459336:A:C--0.05717884114715520.0287089187594737COADMale-baised eQTL
rs295383chr19:23348402:A:G--0.06127987517878460.0288965210242149COADMale-baised eQTL
rs112543804chr19:21704889:C:T-0.1135023076711410.0301599333052636COADMale-baised eQTL
rs295416chr19:23326030:G:A--0.06009353521043580.0315838834300893COADMale-baised eQTL
rs295408chr19:23329478:G:A--0.06045181742515660.0323268658159277COADMale-baised eQTL
rs295407chr19:23330872:C:T--0.06045181742515660.0323268658159277COADMale-baised eQTL
rs295404chr19:23333615:G:C--0.06045181742515660.0323268658159277COADMale-baised eQTL
rs295403chr19:23334244:A:G--0.06045181742515660.0323268658159277COADMale-baised eQTL
rs295402chr19:23334765:A:G--0.06045181742515660.0323268658159277COADMale-baised eQTL
rs295401chr19:23335026:T:C--0.06045181742515660.0323268658159277COADMale-baised eQTL
rs4505459chr19:21732685:C:T-0.1154932188357290.0324094531896108COADMale-baised eQTL
rs2633336chr19:16686856:T:C--0.08079813489171490.0342894124401001COADMale-baised eQTL
rs75671674chr19:21715838:G:A-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs114125235chr19:21718827:G:C-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs78599900chr19:21719418:A:G-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs75191519chr19:21722934:A:G-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs79681071chr19:21723883:A:C-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs76450366chr19:21724367:T:C-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs111540312chr19:21734343:G:A-0.1106318160375790.0342966535186603COADMale-baised eQTL
rs4130935chr19:21741742:T:C-0.1125596960240440.0364168173249758COADMale-baised eQTL
rs113832044chr19:21746919:A:G-0.1125596960240440.0364168173249758COADMale-baised eQTL
rs113522932chr19:21760323:T:A-0.1125596960240440.0364168173249758COADMale-baised eQTL
rs78661071chr19:21762455:A:G-0.1125596960240440.0364168173249758COADMale-baised eQTL
rs684580chr19:23457151:T:C--0.05651378789179370.0370030839464003COADMale-baised eQTL
rs2619709chr19:23453368:T:C--0.05577714717172280.0390220422866398COADMale-baised eQTL
rs295381chr19:23349915:C:T--0.05856184419143260.04106726124405COADMale-baised eQTL
rs35462958chr19:23390177:A:G--0.05759034371649950.0423970866117832COADMale-baised eQTL
rs3803908chr19:4250994:A:G-0.05505680954155670.0429724672692634COADMale-baised eQTL
rs427567chr19:23305998:T:G--0.05829873262027860.0436725259542432COADMale-baised eQTL
rs1600361chr19:23389695:A:T--0.05652256631660150.0455365339996781COADMale-baised eQTL
rs295353chr19:23314647:T:C--0.057707834485770.0456319352229592COADMale-baised eQTL
rs424223chr19:23303091:G:T--0.05788736913395180.0456631133214205COADMale-baised eQTL
rs71333885chr19:23387495:C:T--0.05689210526863980.0462668337725527COADMale-baised eQTL
rs453711chr19:23303979:G:A--0.05767940319931330.0463492357035656COADMale-baised eQTL
rs2438154chr19:23315542:T:C--0.05754367680397860.0464678577510305COADMale-baised eQTL
rs295380chr19:23349923:C:T--0.05754854991181860.046889139820016COADMale-baised eQTL
rs295379chr19:23350749:G:A--0.05754854991181860.046889139820016COADMale-baised eQTL
rs295370chr19:23356960:C:T--0.05754854991181860.046889139820016COADMale-baised eQTL
rs159356chr19:23358198:G:A--0.05754854991181860.046889139820016COADMale-baised eQTL
rs295368chr19:23358670:A:G--0.05754854991181860.046889139820016COADMale-baised eQTL
rs296092chr19:23362202:G:A--0.05754854991181860.046889139820016COADMale-baised eQTL
rs296086chr19:23364220:A:G--0.05754854991181860.046889139820016COADMale-baised eQTL
rs296085chr19:23364245:T:C--0.05754854991181860.046889139820016COADMale-baised eQTL
rs296081chr19:23368440:A:G--0.05754854991181860.046889139820016COADMale-baised eQTL
rs8104071chr19:23372496:C:T--0.05754854991181860.046889139820016COADMale-baised eQTL
rs8102644chr19:23376569:T:C--0.05754854991181860.046889139820016COADMale-baised eQTL
rs12978950chr19:23385626:T:C--0.05682684110701630.0486363519562876COADMale-baised eQTL
rs113427707chr19:21764158:C:T-0.1101532757734960.0489825014532658COADMale-baised eQTL
rs75001417chr19:21764975:A:G-0.1101532757734960.0489825014532658COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000132000
CpG Site: cg07425555
Position to Gene: gene,exon,UTR
Male Effect: -
Female Effect: -0.0825016874339096

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg07425555chr19:13938205gene,exon,UTR-0.08250168743390965.23948279750272e-08-0.39676522557927564.8124987015406014e-11LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of PODNL1

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource