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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000123191

Summary for ATP7B

check button Gene summary

Gene informationEnsembl ID

ENSG00000123191

Gene symbol

ATP7B

Gene nameATPase copper transporting beta
HGNC

870

Entrez ID

540

Gene typeprotein_coding
SynonymsATP7B|
UniProtAcc

P35670


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for ATP7B

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
ATP7B8.15e+02-2.01e+004.49e-01-4.48e+007.58e-064.40e-05CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
ATP7B1.58e+031.05e+001.24e-018.54e+001.39e-174.26e-17BRCA
ATP7B1.53e+031.51e+003.62e-014.17e+003.00e-051.69e-04READ

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Sex-biased somatic mutation for ATP7B

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for ATP7B

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
CHOLcg02071074chr13:52011147CGI:chr13:52011178-52012431promoter,gene body3.18e-011.92e-012.48e+001.30e-022.54e-021.26e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

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Exon skipping events with PSI in TCGA for ATP7B

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for ATP7B

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for ATP7B

check buttonTFs related to ATP7B.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonATP7B related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for ATP7B

check buttonRBPs related to ES in ATP7B.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonATP7B related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs56890737chr13:54873143:C:T-0.2300787389645830.0456591049395819READFemale-baised eQTL
rs9597057chr13:54883698:A:G-0.2300787389645830.0456591049395819READFemale-baised eQTL
rs11616335chr13:45928877:A:T-0.1804150111014254.30372097906113e-05LUSCFemale-baised eQTL
rs7323013chr13:47647854:A:G-0.1574257214587915.60773634444837e-05LUSCFemale-baised eQTL
rs10220099chr13:47895959:C:T-0.1385819036317290.000439215045930754LUSCFemale-baised eQTL
rs28628659chr13:47893051:G:C-0.1310001606103290.00105904410492331LUSCFemale-baised eQTL
rs76736208chr13:47894699:C:T-0.1310001606103290.00105904410492331LUSCFemale-baised eQTL
rs113930354chr13:47898569:G:A-0.1303948141247220.00210207077779268LUSCFemale-baised eQTL
rs112665619chr13:47898617:C:A-0.1303948141247220.00210207077779268LUSCFemale-baised eQTL
rs79062405chr13:47863216:C:T-0.1427773848189160.00213130873685018LUSCFemale-baised eQTL
rs6561409chr13:47891967:A:G--0.1369673750303750.00216670266427672LUSCFemale-baised eQTL
rs117751234chr13:47898799:T:C-0.1292238386880910.00255811734822739LUSCFemale-baised eQTL
rs114032724chr13:48141642:G:A-0.1196408411789420.00390240531943159LUSCFemale-baised eQTL
rs76139424chr13:48144514:A:C-0.122967099893370.00704327694510451LUSCFemale-baised eQTL
rs9534251chr13:45926160:C:T-0.1154629567942530.00963168119705315LUSCFemale-baised eQTL
rs112391527chr13:47729811:A:G-0.1204566829578630.010298341277768LUSCFemale-baised eQTL
rs58383714chr13:53222727:G:C-0.1299573500575870.0110612260535381LUSCFemale-baised eQTL
rs116936607chr13:53225079:G:A-0.1299573500575870.0110612260535381LUSCFemale-baised eQTL
rs79170238chr13:53227001:A:G-0.1299573500575870.0110612260535381LUSCFemale-baised eQTL
rs9595762chr13:47690505:C:A-0.1243376549479640.0114807180809327LUSCFemale-baised eQTL
rs117342437chr13:53228045:G:A-0.1296324114333430.0115628118709778LUSCFemale-baised eQTL
rs75415660chr13:51105439:A:G-0.1117808856572770.0171024702716402LUSCFemale-baised eQTL
rs148652785chr13:60801928:T:C-0.1091871580231020.018262704957175LUSCFemale-baised eQTL
rs9568518chr13:51111405:C:T-0.1113377397239970.0184365670906561LUSCFemale-baised eQTL
rs77343871chr13:48140496:G:A-0.1025297060483560.0218133501937821LUSCFemale-baised eQTL
rs77584867chr13:48136078:T:C-0.1078337597589660.0241208464553342LUSCFemale-baised eQTL
rs9538925chr13:60798067:T:G-0.1046997607083940.0251980757349346LUSCFemale-baised eQTL
rs147024443chr13:60804387:G:T-0.1046997607083940.0251980757349346LUSCFemale-baised eQTL
rs9538935chr13:60805147:C:T-0.1046997607083940.0251980757349346LUSCFemale-baised eQTL
rs9538937chr13:60805584:G:A-0.1046997607083940.0251980757349346LUSCFemale-baised eQTL
rs9528230chr13:60809561:G:A-0.1046997607083940.0251980757349346LUSCFemale-baised eQTL
rs35546838chr13:60816958:G:A-0.1014608576099960.0303217850772207LUSCFemale-baised eQTL
rs368161889chr13:60803680:A:T-0.1006240457478990.0342456743340227LUSCFemale-baised eQTL
rs1399148chr13:60806281:C:T-0.1006240457478990.0342456743340227LUSCFemale-baised eQTL
rs9528229chr13:60808190:A:T-0.1006240457478990.0342456743340227LUSCFemale-baised eQTL
rs7319052chr13:60808915:C:T-0.1006240457478990.0342456743340227LUSCFemale-baised eQTL
rs7319710chr13:60809081:G:A-0.1006240457478990.0342456743340227LUSCFemale-baised eQTL
rs115145695chr13:42071727:C:T-0.1248850645515860.0382203279571361LUSCFemale-baised eQTL
rs79306063chr13:48031295:T:C-0.09831645436045590.0488218394056814LUSCFemale-baised eQTL
rs146928846chr13:48034375:G:A-0.09831645436045590.0488218394056814LUSCFemale-baised eQTL
rs183651030chr13:48039820:A:C-0.09831645436045590.0488218394056814LUSCFemale-baised eQTL
rs77321164chr13:48040075:G:T-0.09831645436045590.0488218394056814LUSCFemale-baised eQTL
rs10507604chr13:55994753:G:C-0.1238478446295510.0135455593691009STADFemale-baised eQTL
rs74238280chr13:52667586:T:A-0.12796367827590.0356810375070086STADFemale-baised eQTL
rs9596668chr13:52675862:T:C-0.12796367827590.0356810375070086STADFemale-baised eQTL
rs111380009chr13:52686899:C:G-0.12796367827590.0356810375070086STADFemale-baised eQTL
rs113905692chr13:52696358:C:T-0.12796367827590.0356810375070086STADFemale-baised eQTL
rs113285106chr13:52713615:A:G-0.1279166634720680.0358867440023775STADFemale-baised eQTL
rs60755033chr13:61519563:A:G-0.08525757605567710.0395857707284235STADFemale-baised eQTL
rs80190915chr13:51203776:G:A-0.1783768469031930.0114245861996838BLCAFemale-baised eQTL
rs77269226chr13:51212599:T:A-0.1783768469031930.0114245861996838BLCAFemale-baised eQTL
rs77339963chr13:58971390:C:A-0.09932538720890530.0145658815436044LUADFemale-baised eQTL
rs17055774chr13:58966442:T:C-0.09893264662886440.0152802203526476LUADFemale-baised eQTL
rs68086859chr13:61198739:T:C-0.09649821015439340.0153112477137223LUADFemale-baised eQTL
rs57042574chr13:48716125:A:T-0.0840047109796830.0167704847656804LUADFemale-baised eQTL
rs11148326chr13:55074978:T:G-0.05038418702118990.0208900577691855LUADFemale-baised eQTL
rs7140122chr13:55076714:A:G-0.05038418702118990.0208900577691855LUADFemale-baised eQTL
rs9595978chr13:48723933:G:A-0.06770676942786640.0242961568367522LUADFemale-baised eQTL
rs9595990chr13:48749928:C:T-0.06646021955845670.0246457556574153LUADFemale-baised eQTL
rs17055784chr13:58972420:C:G-0.09348487294042370.0249584050903772LUADFemale-baised eQTL
rs60424010chr13:48720446:G:A-0.07382018525312150.0413244067512232LUADFemale-baised eQTL
rs12877713chr13:47558599:T:C--0.05869186687496520.0385193588962709COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs7338471chr13:49406928:G:T--0.09815574535094880.045950557778118READMale-baised eQTL
rs9563883chr13:61140131:A:G-0.1544929914436930.0180940617599334LIHCMale-baised eQTL
rs9563884chr13:61145868:C:A-0.1544929914436930.0180940617599334LIHCMale-baised eQTL
rs9563890chr13:61155577:A:G-0.1515980185391440.0197758643018281LIHCMale-baised eQTL
rs9570479chr13:61148214:G:A-0.1513542997076590.0202885317617091LIHCMale-baised eQTL
rs9563888chr13:61149275:G:A-0.1513542997076590.0202885317617091LIHCMale-baised eQTL
rs9570480chr13:61149867:A:C-0.1513542997076590.0202885317617091LIHCMale-baised eQTL
rs75771344chr13:61098265:T:G-0.1342411446440840.0212688873520312LIHCMale-baised eQTL
rs77557914chr13:61098183:T:C-0.1312853828048790.0310660703580528LIHCMale-baised eQTL
rs75060974chr13:61098237:A:G-0.1312853828048790.0310660703580528LIHCMale-baised eQTL
rs79032692chr13:50805838:G:T-0.09108363902866170.0415223577191312LIHCMale-baised eQTL
rs76567290chr13:50805839:G:A-0.09108363902866170.0415223577191312LIHCMale-baised eQTL
rs77948889chr13:50805840:G:T-0.09108363902866170.0415223577191312LIHCMale-baised eQTL
rs7325310chr13:50805987:T:C-0.09108363902866170.0415223577191312LIHCMale-baised eQTL
rs9570488chr13:61169404:G:A-0.1415152267494920.0439886596473842LIHCMale-baised eQTL
rs9535488chr13:50806377:G:A-0.090584638856340.0440448684065447LIHCMale-baised eQTL
rs7988749chr13:61120815:T:C-0.1196266365776560.0498529126954504LIHCMale-baised eQTL
rs759960chr13:45872969:A:G-0.04597581633646020.000614842693833966LUSCMale-baised eQTL
rs759963chr13:45871874:G:T-0.03992500041834820.00195098253260535LUSCMale-baised eQTL
rs9534246chr13:45872292:C:T-0.03992500041834820.00195098253260535LUSCMale-baised eQTL
rs759962chr13:45871943:C:G-0.0379946667689720.004033082977097LUSCMale-baised eQTL
rs80125013chr13:52645944:C:T-0.04167839275756350.0122072519806905LUSCMale-baised eQTL
rs71437879chr13:52648493:C:T-0.04167839275756350.0122072519806905LUSCMale-baised eQTL
rs117841366chr13:52068864:G:A-0.04345273612429180.015811006100925LUSCMale-baised eQTL
rs118011133chr13:52061198:T:C-0.04177603801057450.0220841866280687LUSCMale-baised eQTL
rs9567401chr13:44285941:T:C-0.03963008791271690.0363945583356578LUSCMale-baised eQTL
rs73210047chr13:60589674:G:A-0.03737834729961210.0429096156635063BLCAMale-baised eQTL
rs9570619chr13:61746940:A:G-0.02745359603592450.0449488544006646BLCAMale-baised eQTL
rs9536455chr13:53542940:G:T-0.1149121146185640.00199153055839533COADMale-baised eQTL
rs9527145chr13:53923816:A:C-0.1060462334423170.00849080175866611COADMale-baised eQTL
rs17461155chr13:43732906:C:T-0.1074867335406450.0116383419659505COADMale-baised eQTL
rs2166626chr13:42012256:C:G--0.08443456622789330.0122547262289795COADMale-baised eQTL
rs35426640chr13:54091930:T:C-0.06068735028714540.0125908904470606COADMale-baised eQTL
rs2408989chr13:54092753:A:C-0.05796036710647170.0188722971743125COADMale-baised eQTL
rs7337284chr13:53492179:C:T-0.05189827420196150.0249939269629714COADMale-baised eQTL
rs9527009chr13:52788100:G:A-0.05005272877938120.0370910526878036COADMale-baised eQTL
rs1105586chr13:43658497:T:C-0.04756312098271990.0383730090921513COADMale-baised eQTL
rs9525817chr13:43651053:T:C-0.05363389685373070.038506004130627COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000123191
CpG Site: cg12178900
Position to Gene: gene
Male Effect: -
Female Effect: -0.358402340098607

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg12178900chr13:51998633gene-0.3584023400986071.86046818735179e-05-0.34759924448042711.3499764423159753e-08LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of ATP7B

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000123191ATP7BC0006142Malignant neoplasm of breast1CTD_human
ENSG00000123191ATP7BC0007097Carcinoma2CTD_human
ENSG00000123191ATP7BC0009402Colorectal Carcinoma1CTD_human
ENSG00000123191ATP7BC0009404Colorectal Neoplasms1CTD_human
ENSG00000123191ATP7BC0015695Fatty Liver1CTD_human
ENSG00000123191ATP7BC0019158Hepatitis2CTD_human
ENSG00000123191ATP7BC0019202Hepatolenticular Degeneration51CTD_human
ENSG00000123191ATP7BC0019207Hepatoma, Morris1CTD_human
ENSG00000123191ATP7BC0019208Hepatoma, Novikoff1CTD_human
ENSG00000123191ATP7BC0021368Inflammation1CTD_human
ENSG00000123191ATP7BC0022665Kidney Neoplasm1CTD_human
ENSG00000123191ATP7BC0023890Liver Cirrhosis1CTD_human
ENSG00000123191ATP7BC0023895Liver diseases1CTD_human
ENSG00000123191ATP7BC0023903Liver neoplasms1CTD_human
ENSG00000123191ATP7BC0023904Liver Neoplasms, Experimental1CTD_human
ENSG00000123191ATP7BC0026640Mouth Neoplasms1CTD_human
ENSG00000123191ATP7BC0033578Prostatic Neoplasms1CTD_human
ENSG00000123191ATP7BC0041696Unipolar Depression1PSYGENET
ENSG00000123191ATP7BC0086404Experimental Hepatoma1CTD_human
ENSG00000123191ATP7BC0086565Liver Dysfunction1CTD_human
ENSG00000123191ATP7BC0153381Malignant neoplasm of mouth1CTD_human
ENSG00000123191ATP7BC0162557Liver Failure, Acute1CTD_human
ENSG00000123191ATP7BC0205696Anaplastic carcinoma2CTD_human
ENSG00000123191ATP7BC0205697Carcinoma, Spindle-Cell2CTD_human
ENSG00000123191ATP7BC0205698Undifferentiated carcinoma2CTD_human
ENSG00000123191ATP7BC0205699Carcinomatosis2CTD_human
ENSG00000123191ATP7BC0235874Disease Exacerbation3CTD_human
ENSG00000123191ATP7BC0239946Fibrosis, Liver1CTD_human
ENSG00000123191ATP7BC0242339Dyslipidemias1CTD_human
ENSG00000123191ATP7BC0345904Malignant neoplasm of liver1CTD_human
ENSG00000123191ATP7BC0376358Malignant neoplasm of prostate1CTD_human
ENSG00000123191ATP7BC0598784Dyslipoproteinemias1CTD_human
ENSG00000123191ATP7BC0678222Breast Carcinoma1CTD_human
ENSG00000123191ATP7BC0740457Malignant neoplasm of kidney1CTD_human
ENSG00000123191ATP7BC0919267ovarian neoplasm1CTD_human
ENSG00000123191ATP7BC1140680Malignant neoplasm of ovary1CTD_human
ENSG00000123191ATP7BC1168401Squamous cell carcinoma of the head and neck1CTD_human
ENSG00000123191ATP7BC1257931Mammary Neoplasms, Human1CTD_human
ENSG00000123191ATP7BC1269683Major Depressive Disorder1PSYGENET
ENSG00000123191ATP7BC1458155Mammary Neoplasms1CTD_human
ENSG00000123191ATP7BC1527352Hepatic Form of Wilson Disease51CTD_human
ENSG00000123191ATP7BC2711227Steatohepatitis1CTD_human
ENSG00000123191ATP7BC4704874Mammary Carcinoma, Human1CTD_human