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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000110628

Summary for SLC22A18

check button Gene summary

Gene informationEnsembl ID

ENSG00000110628

Gene symbol

SLC22A18

Gene namesolute carrier family 22 member 18
HGNC

10964

Entrez ID

5002

Gene typeprotein_coding
SynonymsSLC22A18|BWR1A|TSSC5|ITM
UniProtAcc

Q96BI1


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for SLC22A18

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
SLC22A182.62e+031.06e+001.65e-016.42e+001.40e-101.79e-09THCA
SLC22A182.66e+03-1.42e+004.05e-01-3.50e+004.62e-041.71e-03CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
SLC22A181.47e+031.23e+009.90e-021.24e+012.29e-351.43e-34BRCA

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Sex-biased somatic mutation for SLC22A18

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for SLC22A18

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg18419977chr11:2898822CGI:chr11:2902071-2902587promoter5.72e-017.29e-01-2.22e+002.64e-023.89e-02-1.56e-01
BRCAcg16129800chr11:2899184CGI:chr11:2902071-2902587promoter5.41e-016.50e-01-3.05e+002.31e-031.46e-02-1.09e-01
BRCAcg16346422chr11:2899589CGI:chr11:2902071-2902587promoter4.02e-015.18e-01-2.01e+004.42e-024.77e-02-1.16e-01
BRCAcg16873863chr11:2899946CGI:chr11:2902071-2902587promoter,gene body6.32e-017.91e-01-2.53e+001.14e-022.80e-02-1.59e-01
BRCAcg09198782chr11:2901532CGI:chr11:2902071-2902587promoter,gene body7.14e-018.40e-01-3.53e+004.11e-045.24e-03-1.26e-01
KIRPcg15739881chr11:2901234CGI:chr11:2902071-2902587promoter,gene body7.23e-016.13e-013.90e+009.55e-057.40e-041.10e-01
KIRPcg12563184chr11:2901261CGI:chr11:2902071-2902587promoter,gene body6.93e-015.52e-014.24e+002.24e-052.03e-041.41e-01
KIRPcg09198782chr11:2901532CGI:chr11:2902071-2902587promoter,gene body6.99e-015.93e-013.48e+005.09e-042.91e-031.06e-01
KICHcg05457684chr11:2898578CGI:chr11:2902071-2902587promoter8.51e-017.18e-012.36e+001.84e-023.60e-021.33e-01
KICHcg24205453chr11:2901104CGI:chr11:2902071-2902587promoter,gene body5.96e-017.40e-01-2.22e+002.62e-024.10e-02-1.44e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
KIRCcg18419977chr11:2898822CGI:chr11:2902071-2902587promoter1.11e-013.72e-01-6.13e+008.67e-101.08e-08-2.61e-01
KIRCcg13485320chr11:2898898CGI:chr11:2902071-2902587promoter6.76e-021.83e-01-6.89e+005.49e-121.08e-09-1.16e-01
LUADcg25427871chr11:2899505CGI:chr11:2902071-2902587promoter6.48e-014.84e-013.60e+003.19e-047.43e-041.64e-01
LUADcg16346422chr11:2899589CGI:chr11:2902071-2902587promoter6.56e-015.08e-013.44e+005.72e-041.21e-031.48e-01
THCAcg05457684chr11:2898578CGI:chr11:2902071-2902587promoter6.92e-018.53e-01-3.86e+001.13e-046.52e-04-1.61e-01
HNSCcg13485320chr11:2898898CGI:chr11:2902071-2902587promoter9.07e-022.09e-01-5.44e+005.28e-086.07e-07-1.18e-01
LUSCcg25427871chr11:2899505CGI:chr11:2902071-2902587promoter6.24e-014.53e-012.40e+001.63e-022.03e-021.71e-01
LUSCcg21019522chr11:2899559CGI:chr11:2902071-2902587promoter5.10e-013.32e-013.81e+001.39e-048.07e-041.78e-01
LUSCcg16346422chr11:2899589CGI:chr11:2902071-2902587promoter6.75e-015.39e-012.61e+008.94e-031.27e-021.36e-01
LUSCcg24205453chr11:2901104CGI:chr11:2902071-2902587promoter,gene body8.10e-019.16e-01-3.25e+001.13e-032.83e-03-1.06e-01
LUSCcg12563184chr11:2901261CGI:chr11:2902071-2902587promoter,gene body8.11e-019.25e-01-3.29e+009.93e-042.59e-03-1.14e-01
LUSCcg09198782chr11:2901532CGI:chr11:2902071-2902587promoter,gene body6.59e-017.98e-01-3.47e+005.27e-041.71e-03-1.39e-01
LUSCcg10943932chr11:2901603CGI:chr11:2902071-2902587promoter,gene body8.11e-019.25e-01-2.70e+006.96e-031.05e-02-1.14e-01
LUSCcg05385260chr11:2901622CGI:chr11:2902071-2902587promoter,gene body7.12e-018.47e-01-3.62e+002.92e-041.20e-03-1.35e-01
COADcg05385260chr11:2901622CGI:chr11:2902071-2902587promoter,gene body6.60e-017.70e-01-3.54e+003.96e-041.06e-03-1.10e-01
BLCAcg26665035chr11:2898533CGI:chr11:2902071-2902587promoter6.10e-017.44e-01-2.16e+003.06e-023.41e-02-1.34e-01
BLCAcg16587707chr11:2899035CGI:chr11:2902071-2902587promoter5.51e-017.16e-01-2.86e+004.30e-037.21e-03-1.65e-01
BLCAcg24205453chr11:2901104CGI:chr11:2902071-2902587promoter,gene body7.20e-018.99e-01-3.59e+003.27e-049.58e-04-1.79e-01
BLCAcg09198782chr11:2901532CGI:chr11:2902071-2902587promoter,gene body5.78e-017.38e-01-3.44e+005.81e-041.49e-03-1.60e-01
LIHCcg24033661chr11:2898825CGI:chr11:2902071-2902587promoter3.90e-012.45e-014.27e+001.99e-054.99e-051.46e-01
KIRPcg21853021chr11:2898916CGI:chr11:2902071-2902587promoter6.80e-021.71e-01-5.28e+001.30e-071.04e-06-1.03e-01
KIRPcg10943932chr11:2901603CGI:chr11:2902071-2902587promoter,gene body5.97e-016.99e-01-2.02e+004.39e-024.48e-02-1.02e-01
ESCAcg26665035chr11:2898533CGI:chr11:2902071-2902587promoter5.99e-017.43e-01-2.42e+001.54e-023.84e-02-1.44e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg16346422chr11:2899589CGI:chr11:2902071-2902587promoter4.02e-015.16e-01-6.77e+001.31e-113.68e-11-1.15e-01
BRCAcg15739881chr11:2901234CGI:chr11:2902071-2902587promoter,gene body8.14e-016.59e-011.25e+017.16e-362.43e-341.55e-01
BRCAcg12563184chr11:2901261CGI:chr11:2902071-2902587promoter,gene body8.16e-016.70e-011.07e+016.39e-276.55e-261.46e-01
BRCAcg09198782chr11:2901532CGI:chr11:2902071-2902587promoter,gene body7.14e-016.02e-019.30e+001.37e-207.80e-201.12e-01
KIRCcg02081198chr11:2901615CGI:chr11:2902071-2902587promoter,gene body8.48e-019.71e-01-3.15e+001.64e-035.79e-03-1.23e-01
KIRCcg21019522chr11:2899559CGI:chr11:2902071-2902587promoter5.34e-014.31e-012.90e+003.69e-039.14e-031.02e-01
KIRCcg16873863chr11:2899946CGI:chr11:2902071-2902587promoter,gene body8.14e-017.07e-012.23e+002.58e-023.19e-021.07e-01
KIRCcg24041239chr11:2901405CGI:chr11:2902071-2902587promoter,gene body7.75e-018.78e-01-2.57e+001.01e-021.72e-02-1.03e-01
LUADcg18458509chr11:2898959CGI:chr11:2902071-2902587promoter2.20e-013.20e-01-3.28e+001.02e-033.24e-03-1.01e-01
LUADcg21599100chr11:2899207CGI:chr11:2902071-2902587promoter5.61e-016.79e-01-2.96e+003.10e-036.88e-03-1.18e-01
LUADcg16873863chr11:2899946CGI:chr11:2902071-2902587promoter,gene body6.69e-018.28e-01-2.25e+002.45e-022.99e-02-1.59e-01
HNSCcg05752118chr11:2899334CGI:chr11:2902071-2902587promoter5.06e-014.05e-012.34e+001.92e-022.69e-021.01e-01
HNSCcg21019522chr11:2899559CGI:chr11:2902071-2902587promoter4.26e-013.12e-012.50e+001.24e-022.09e-021.14e-01
HNSCcg16873863chr11:2899946CGI:chr11:2902071-2902587promoter,gene body7.42e-015.29e-012.90e+003.79e-031.19e-022.12e-01
HNSCcg05385260chr11:2901622CGI:chr11:2902071-2902587promoter,gene body7.74e-016.13e-012.78e+005.40e-031.38e-021.61e-01
COADcg09198782chr11:2901532CGI:chr11:2902071-2902587promoter,gene body6.13e-014.97e-013.36e+007.90e-042.52e-031.16e-01
LIHCcg22040301chr11:2898568CGI:chr11:2902071-2902587promoter7.51e-018.70e-01-2.65e+007.96e-031.16e-02-1.19e-01
KIRPcg26665035chr11:2898533CGI:chr11:2902071-2902587promoter7.47e-018.74e-01-2.50e+001.24e-021.94e-02-1.28e-01
KIRPcg24033661chr11:2898825CGI:chr11:2902071-2902587promoter8.34e-022.04e-01-2.17e+003.01e-023.53e-02-1.21e-01
KIRPcg16346422chr11:2899589CGI:chr11:2902071-2902587promoter7.30e-015.75e-012.80e+005.08e-031.08e-021.56e-01
KIRPcg24205453chr11:2901104CGI:chr11:2902071-2902587promoter,gene body8.36e-017.21e-013.39e+007.05e-043.16e-031.15e-01

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Exon skipping events with PSI in TCGA for SLC22A18

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for SLC22A18

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for SLC22A18

check buttonTFs related to SLC22A18.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonSLC22A18 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for SLC22A18

check buttonRBPs related to ES in SLC22A18.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
DLBCSAMD4Aexon_skip_563838.15e+005.94e-038.53e+009.87e-01Female-biased
CHOLG3BP2exon_skip_563387.42e+009.81e-016.99e+008.07e-03Male-biased
BRCASAMD4Aexon_skip_563838.60e+004.81e-039.45e+009.92e-01Female-biased
READRBM4exon_skip_563338.48e+002.51e-038.93e+009.93e-01Female-biased
MESONOVA2exon_skip_563387.32e+007.48e-037.69e+009.83e-01Female-biased
PAADSAMD4Aexon_skip_563838.87e+009.95e-018.27e+002.96e-04Male-biased
KICHHNRNPH2exon_skip_563436.72e+009.84e-016.02e+003.66e-04Male-biased
KICHNOVA2exon_skip_563387.24e+003.54e-037.66e+009.87e-01Female-biased
KICHRBM6exon_skip_563279.55e+007.98e-039.89e+009.90e-01Female-biased
KICHSAMD4Aexon_skip_563838.78e+009.93e-018.30e+001.99e-03Male-biased
SKCMSAMD4Aexon_skip_563838.80e+002.50e-039.31e+009.94e-01Female-biased
HNSCHNRNPH2exon_skip_563436.31e+002.68e-036.77e+009.82e-01Female-biased

check buttonSLC22A18 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs1045502chr11:252818:G:A-0.1254669394418570.0163998740101151SARCFemale-baised eQTL
rs1045577chr11:252942:G:A-0.1254669394418570.0163998740101151SARCFemale-baised eQTL
rs532483chr11:257030:G:A-0.1248833689358840.01784300703172SARCFemale-baised eQTL
rs41401046chr11:1084428:G:A-0.1946046566685210.000182403758671249COADFemale-baised eQTL
rs11245932chr11:1084986:C:T-0.1829222157844470.000223061465134557COADFemale-baised eQTL
rs11245936chr11:1086366:G:A-0.1737230171822480.000537316651561173COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs12286813chr11:7949826:C:G-0.1501047078913690.0477834116027962THCAMale-baised eQTL
rs4259814chr11:7950941:T:A-0.1501047078913690.0477834116027962THCAMale-baised eQTL
rs2136907chr11:7951686:C:T-0.1501047078913690.0477834116027962THCAMale-baised eQTL
rs957645chr11:11096939:C:T-0.0571516055547410.0280659802201209BLCAMale-baised eQTL
rs6484611chr11:11013068:G:C--0.07336844612278950.0194887738396569LUADMale-baised eQTL
rs2129285chr11:11013950:G:A--0.0649936991035690.0267215875318579LUADMale-baised eQTL
rs4910215chr11:10987966:A:T--0.07150719870538270.0273031185327396LUADMale-baised eQTL
rs9804699chr11:10994744:A:G--0.07150719870538270.0273031185327396LUADMale-baised eQTL
rs35998740chr11:11002665:A:G--0.07075870625142470.0275750493950189LUADMale-baised eQTL
rs6484590chr11:10990254:A:C--0.0649787408946140.0316854122356001LUADMale-baised eQTL
rs78554753chr11:11014544:G:A-0.06778607456972110.0354653833104275LUADMale-baised eQTL
rs7104468chr11:11014750:C:T-0.06711506907226150.0365820678160767LUADMale-baised eQTL
rs74605099chr11:10998399:A:G-0.08456974385450460.0397226482800828LUADMale-baised eQTL
rs10770159chr11:11016785:G:A--0.06541425197147740.0437469752802806LUADMale-baised eQTL
rs7930378chr11:7336975:T:C--0.09681257000252420.0189786077050486COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000110628
CpG Site: cg08827700
Position to Gene: gene
Male Effect: -
Female Effect: -0.298819583054772
eQTM boxplot analysisGene ID: ENSG00000110628
CpG Site: cg22272492
Position to Gene: gene
Male Effect: -
Female Effect: -0.298819583054772
eQTM boxplot analysisGene ID: ENSG00000110628
CpG Site: cg24205453
Position to Gene: gene,promoter
Male Effect: -
Female Effect: -0.410025920128358
eQTM boxplot analysisGene ID: ENSG00000110628
CpG Site: cg16873863
Position to Gene: gene,promoter
Male Effect: -0.215746705495477
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg16873863chr11:2899946gene,promoter-0.2157467054954771.28212810606193e-08-0.376044157225799543.058613175319563e-11SKCM

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg08827700chr11:2904739gene-0.2988195830547725.40121461363185e-05-0.43237042837840724.5326509426480366e-08COAD
cg22272492chr11:2904766gene-0.2988195830547725.40121461363185e-05-0.43237042837840724.5326509426480366e-08COAD
cg24205453chr11:2901104gene,promoter-0.4100259201283586.02385088907487e-07-0.36919159807384491.2731987114733807e-09LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of SLC22A18

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000110628SLC22A18C0001973Alcoholic Intoxication, Chronic1PSYGENET
ENSG00000110628SLC22A18C0006142Malignant neoplasm of breast1CTD_human
ENSG00000110628SLC22A18C0024121Lung Neoplasms1CTD_human
ENSG00000110628SLC22A18C0242379Malignant neoplasm of lung1CTD_human
ENSG00000110628SLC22A18C0678222Breast Carcinoma1CTD_human
ENSG00000110628SLC22A18C1257931Mammary Neoplasms, Human1CTD_human
ENSG00000110628SLC22A18C1458155Mammary Neoplasms1CTD_human
ENSG00000110628SLC22A18C1849385Rhabdomyosarcoma 11CTD_human
ENSG00000110628SLC22A18C4704874Mammary Carcinoma, Human1CTD_human