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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000106565

Summary for TMEM176B

check button Gene summary

Gene informationEnsembl ID

ENSG00000106565

Gene symbol

TMEM176B

Gene nametransmembrane protein 176B
HGNC

29596

Entrez ID

28959

Gene typeprotein_coding
SynonymsTMEM176B|LR8|MS4B2
UniProtAcc

Q3YBM2


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for TMEM176B

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
TMEM176B6.39e+031.04e+002.30e-014.51e+006.39e-062.01e-05LUAD
TMEM176B2.26e+031.39e+003.13e-014.42e+009.74e-064.41e-05THCA
TMEM176B3.31e+041.01e+002.13e-014.76e+001.98e-066.67e-06KIRP
TMEM176B2.53e+04-3.29e+004.60e-01-7.15e+008.96e-132.35e-11CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

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Sex-biased somatic mutation for TMEM176B

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for TMEM176B

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter,gene body2.37e-013.66e-01-2.06e+003.98e-024.59e-02-1.29e-01
ESCAcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter,gene body4.55e-013.43e-012.14e+003.21e-024.47e-021.12e-01
ESCAcg14991769chr7:150800069CGI:chr7:150799721-150801118UTR,promoter,exon,gene body5.51e-014.34e-012.12e+003.37e-024.53e-021.17e-01
ESCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter,gene body3.61e-012.61e-012.52e+001.17e-022.91e-021.00e-01
ACCcg05726600chr7:150801506CGI:chr7:150799721-150801118promoter6.12e-017.38e-01-2.47e+001.35e-022.98e-02-1.26e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
KIRCcg05726600chr7:150801506CGI:chr7:150799721-150801118promoter1.60e-012.94e-01-5.35e+008.62e-084.40e-07-1.35e-01
HNSCcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter5.90e-018.01e-01-4.71e+002.46e-061.20e-05-2.11e-01
HNSCcg21053135chr7:150802649CGI:chr7:150799721-150801118promoter6.88e-018.09e-01-2.57e+001.02e-021.30e-02-1.21e-01
LUSCcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter,gene body4.17e-011.34e-013.53e+004.19e-041.49e-032.83e-01
LUSCcg14991769chr7:150800069CGI:chr7:150799721-150801118UTR,promoter,exon,gene body4.66e-012.22e-013.61e+003.09e-041.24e-032.43e-01
LUSCcg26385222chr7:150799989CGI:chr7:150799721-150801118promoter,gene body4.68e-012.49e-013.59e+003.32e-041.29e-032.19e-01
LUSCcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter,gene body2.20e-011.06e-013.26e+001.12e-032.80e-031.14e-01
LUSCcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter6.43e-018.62e-01-3.14e+001.71e-033.74e-03-2.19e-01
LUSCcg21053135chr7:150802649CGI:chr7:150799721-150801118promoter7.24e-018.92e-01-2.57e+001.01e-021.40e-02-1.67e-01
BLCAcg04861380chr7:150800575CGI:chr7:150799721-150801118promoter,gene body1.99e-012.41e-023.11e+001.88e-033.73e-031.75e-01
BLCAcg19336959chr7:150800615CGI:chr7:150799721-150801118promoter,gene body2.05e-013.07e-023.00e+002.66e-034.92e-031.74e-01
BLCAcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter,gene body4.07e-012.16e-012.06e+003.92e-024.14e-021.92e-01
BLCAcg26385222chr7:150799989CGI:chr7:150799721-150801118promoter,gene body4.61e-013.13e-012.59e+009.47e-031.35e-021.48e-01
BLCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter,gene body3.34e-011.26e-013.33e+008.61e-042.02e-032.08e-01
BLCAcg25124476chr7:150800650CGI:chr7:150799721-150801118promoter,gene body2.53e-019.46e-022.98e+002.90e-035.27e-031.58e-01
BLCAcg00417408chr7:150800652CGI:chr7:150799721-150801118promoter,gene body2.74e-011.14e-012.89e+003.82e-036.57e-031.61e-01
BLCAcg07769074chr7:150800672CGI:chr7:150799721-150801118promoter,gene body1.68e-015.79e-022.63e+008.49e-031.24e-021.10e-01
BLCAcg08359956chr7:150801117CGI:chr7:150799721-150801118UTR,promoter,exon,gene body3.25e-011.93e-012.18e+002.94e-023.31e-021.32e-01
LIHCcg21053135chr7:150802649CGI:chr7:150799721-150801118promoter7.69e-019.00e-01-3.88e+001.03e-042.12e-04-1.31e-01
CHOLcg08359956chr7:150801117CGI:chr7:150799721-150801118UTR,promoter,exon,gene body3.81e-011.29e-012.43e+001.50e-022.65e-022.52e-01
CHOLcg03964111chr7:150801405CGI:chr7:150799721-150801118promoter5.08e-012.10e-012.29e+002.23e-023.24e-022.97e-01
CHOLcg10409299chr7:150801755CGI:chr7:150799721-150801118promoter7.43e-015.04e-013.10e+001.96e-031.07e-022.40e-01
CHOLcg07208344chr7:150802274CGI:chr7:150799721-150801118promoter8.51e-016.09e-013.54e+004.02e-048.32e-032.42e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg04861380chr7:150800575CGI:chr7:150799721-150801118promoter,gene body1.51e-012.28e-029.05e+001.48e-197.69e-191.29e-01
BRCAcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter,gene body2.87e-019.07e-028.44e+003.14e-171.36e-161.96e-01
BRCAcg14991769chr7:150800069CGI:chr7:150799721-150801118UTR,promoter,exon,gene body4.01e-011.86e-018.77e+001.85e-188.80e-182.15e-01
BRCAcg26385222chr7:150799989CGI:chr7:150799721-150801118promoter,gene body3.55e-012.04e-017.62e+002.59e-148.95e-141.52e-01
BRCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter,gene body2.37e-011.05e-016.93e+004.36e-121.27e-111.32e-01
BRCAcg25124476chr7:150800650CGI:chr7:150799721-150801118promoter,gene body1.99e-018.56e-026.46e+001.04e-102.72e-101.13e-01
BRCAcg00417408chr7:150800652CGI:chr7:150799721-150801118promoter,gene body2.14e-019.44e-027.02e+002.26e-126.74e-121.20e-01
BRCAcg08359956chr7:150801117CGI:chr7:150799721-150801118UTR,promoter,exon,gene body4.09e-013.04e-016.01e+001.84e-094.37e-091.05e-01
BRCAcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter7.66e-019.16e-01-8.93e+004.30e-192.16e-18-1.50e-01
BRCAcg21053135chr7:150802649CGI:chr7:150799721-150801118promoter8.08e-019.31e-01-8.45e+002.90e-171.26e-16-1.23e-01
LUADcg19336959chr7:150800615CGI:chr7:150799721-150801118promoter,gene body1.28e-012.49e-023.36e+007.93e-042.75e-031.03e-01
LUADcg00417408chr7:150800652CGI:chr7:150799721-150801118promoter,gene body2.02e-018.64e-023.11e+001.90e-034.92e-031.15e-01
LIHCcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter6.06e-014.88e-012.10e+003.61e-023.86e-021.17e-01
KIRPcg14991769chr7:150800069CGI:chr7:150799721-150801118UTR,promoter,exon,gene body2.04e-016.44e-022.87e+004.17e-039.48e-031.40e-01

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Exon skipping events with PSI in TCGA for TMEM176B

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for TMEM176B

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for TMEM176B

check buttonTFs related to TMEM176B.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
PCPGPLAGL2TMEM176B3.52e+009.58e-034.33e+009.82e-01Female-biased

check buttonTMEM176B related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for TMEM176B

check buttonRBPs related to ES in TMEM176B.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonTMEM176B related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs56147424chr7:155243636:C:A-0.1750893300455870.0392573550288782LUSCFemale-baised eQTL
rs79787537chr7:155247419:C:T-0.1740429508153130.0418017725766898LUSCFemale-baised eQTL
rs55686460chr7:155243739:C:T-0.1741531692717140.0418266136499648LUSCFemale-baised eQTL
rs10272702chr7:143261090:T:C-0.2360222750192760.000290428356662926BLCAFemale-baised eQTL
rs77689119chr7:155898541:A:G-0.2536825666193420.0148213482743805BLCAFemale-baised eQTL
rs79567485chr7:155893852:C:A-0.2534203684764650.0152353792235511BLCAFemale-baised eQTL
rs74454984chr7:155901136:C:A-0.2521672711819290.0159381625581147BLCAFemale-baised eQTL
rs140991464chr7:155902087:C:T-0.2521672711819290.0159381625581147BLCAFemale-baised eQTL
rs55639312chr7:155903662:G:T-0.2521672711819290.0159381625581147BLCAFemale-baised eQTL
rs74765187chr7:155904568:A:T-0.2521672711819290.0159381625581147BLCAFemale-baised eQTL
rs116131242chr7:147943620:T:G-0.2900701151488480.0179023820366417BLCAFemale-baised eQTL
rs79051424chr7:147945441:C:T-0.2900701151488480.0179023820366417BLCAFemale-baised eQTL
rs114515860chr7:147946074:G:A-0.2900701151488480.0179023820366417BLCAFemale-baised eQTL
rs117609483chr7:147945736:A:T-0.2678979993569170.0307199083989436BLCAFemale-baised eQTL
rs10952550chr7:143400947:A:G--0.2513916829516630.0417708079550148BLCAFemale-baised eQTL
rs6948526chr7:143319902:T:A-0.1335072551789390.0490785245849631BLCAFemale-baised eQTL
rs12538999chr7:156883660:C:G-0.07932142259661560.0159205951174467LUADFemale-baised eQTL
rs73167961chr7:156886153:A:G-0.07932142259661560.0159205951174467LUADFemale-baised eQTL
rs12539560chr7:156889806:C:T-0.07932142259661560.0159205951174467LUADFemale-baised eQTL
rs34291908chr7:156848194:T:C-0.07586087240908540.020944150062428LUADFemale-baised eQTL
rs73167908chr7:156848910:G:A-0.07586087240908540.020944150062428LUADFemale-baised eQTL
rs11763829chr7:156850723:T:C-0.07586087240908540.020944150062428LUADFemale-baised eQTL
rs11766294chr7:156851100:G:A-0.07586087240908540.020944150062428LUADFemale-baised eQTL
rs12531061chr7:156780108:G:A-0.07898863153698940.0227170688834959LUADFemale-baised eQTL
rs62478411chr7:151952403:C:T-0.07984075603518080.0242401999693693LUADFemale-baised eQTL
rs12535212chr7:156849044:A:G-0.06897701115377950.0398051091118635LUADFemale-baised eQTL
rs183263721chr7:156892719:C:G-0.07315521716530350.0494905734694066LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs11981103chr7:141272843:C:T-0.05297939943572120.027749756913031COADMale-baised eQTL
rs917157chr7:141274731:T:C-0.05025804126564750.0403356608904005COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000106565
CpG Site: cg10409299
Position to Gene: promoter
Male Effect: -0.332239357707762
Female Effect: -
eQTM boxplot analysisGene ID: ENSG00000106565
CpG Site: cg05385923
Position to Gene: gene
Male Effect: -
Female Effect: -0.399716015483684
eQTM boxplot analysisGene ID: ENSG00000106565
CpG Site: cg10409299
Position to Gene: promoter
Male Effect: -
Female Effect: -0.39960041605997
eQTM boxplot analysisGene ID: ENSG00000106565
CpG Site: cg05726600
Position to Gene: promoter
Male Effect: -0.275688353218157
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg10409299chr7:150801755promoter-0.3322393577077626.50476351924228e-08-0.58286186973116293.0379227462413796e-10PAAD
cg05726600chr7:150801506promoter-0.2756883532181574.28684242137857e-13-0.43740472465892246.184930880525317e-15LGG

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg05385923chr7:150798793gene-0.3997160154836847.5136115926661e-08-0.39627494085766145.573778208102075e-11LUAD
cg10409299chr7:150801755promoter-0.399600416059977.58862508455032e-08-0.39597389838657565.297680271841859e-11LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of TMEM176B

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource