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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000083307

Summary for GRHL2

check button Gene summary

Gene informationEnsembl ID

ENSG00000083307

Gene symbol

GRHL2

Gene namegrainyhead like transcription factor 2
HGNC

2799

Entrez ID

79977

Gene typeprotein_coding
SynonymsGRHL2|FLJ13782|BOM
UniProtAcc

Q6ISB3


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for GRHL2

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
GRHL24.09e+031.28e+003.72e-013.43e+005.94e-042.10e-03BLCA
GRHL21.18e+033.78e+006.63e-015.70e+001.19e-081.33e-07CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
GRHL22.16e+031.19e+001.99e-015.99e+002.12e-094.03e-08READ

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Sex-biased somatic mutation for GRHL2

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for GRHL2

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
SARCcg03650674chr8:101493758CGI:chr8:101493284-101494202promoter,gene body4.96e-013.42e-013.43e+006.15e-042.37e-031.53e-01
SARCcg18004756chr8:101492254CGI:chr8:101492250-101492542promoter6.34e-015.04e-013.44e+005.75e-042.25e-031.30e-01
SARCcg25330243chr8:101492273CGI:chr8:101492250-101492542promoter4.92e-013.28e-013.59e+003.25e-041.41e-031.64e-01
SARCcg16435779chr8:101492219CGI:chr8:101492250-101492542promoter6.24e-014.91e-014.30e+001.69e-051.02e-041.33e-01
SARCcg11397370chr8:101492251CGI:chr8:101492250-101492542promoter5.30e-014.29e-013.96e+007.52e-053.98e-041.01e-01
SARCcg03780851chr8:101492336CGI:chr8:101492250-101492542promoter6.01e-014.82e-014.00e+006.29e-053.40e-041.19e-01
SARCcg25639415chr8:101492393CGI:chr8:101492250-101492542promoter5.86e-014.76e-013.47e+005.25e-042.09e-031.10e-01
SARCcg20574490chr8:101492438CGI:chr8:101492250-101492542UTR,promoter,exon,gene body6.68e-015.47e-014.64e+003.57e-062.37e-051.21e-01
LAMLcg17885542chr8:101491716CGI:chr8:101492250-101492542promoter4.29e-015.39e-01-2.62e+008.79e-031.98e-02-1.09e-01
LAMLcg20342184chr8:101491742CGI:chr8:101492250-101492542promoter2.32e-013.41e-01-3.31e+009.36e-042.84e-03-1.09e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
KIRCcg18004756chr8:101492254CGI:chr8:101492250-101492542promoter1.18e-011.75e-026.38e+001.78e-103.73e-091.01e-01
KIRCcg16688483chr8:101494161CGI:chr8:101493284-101494202promoter,gene body2.88e-011.63e-014.03e+005.51e-051.21e-041.25e-01
LUSCcg10899768chr8:101494407CGI:chr8:101493284-101494202promoter,gene body1.62e-013.13e-01-3.62e+002.98e-041.21e-03-1.51e-01
LUSCcg01519063chr8:101493065CGI:chr8:101493284-101494202promoter,gene body2.34e-013.82e-01-3.77e+001.64e-048.77e-04-1.48e-01
LUSCcg18899777chr8:101494323CGI:chr8:101493284-101494202promoter,gene body1.90e-013.17e-01-3.70e+002.18e-041.02e-03-1.27e-01
COADcg10899768chr8:101494407CGI:chr8:101493284-101494202promoter,gene body1.93e-013.53e-01-4.62e+003.87e-062.94e-05-1.60e-01
COADcg14202477chr8:101492631CGI:chr8:101492250-101492542UTR,promoter,exon,gene body2.17e-013.29e-01-4.35e+001.38e-057.52e-05-1.12e-01
COADcg01519063chr8:101493065CGI:chr8:101493284-101494202promoter,gene body2.14e-013.56e-01-4.39e+001.14e-056.49e-05-1.42e-01
COADcg08988797chr8:101493285CGI:chr8:101493284-101494202promoter,gene body1.09e-012.42e-01-4.39e+001.14e-056.49e-05-1.32e-01
COADcg18899777chr8:101494323CGI:chr8:101493284-101494202promoter,gene body2.09e-013.65e-01-4.66e+003.15e-062.55e-05-1.56e-01
LIHCcg14202477chr8:101492631CGI:chr8:101492250-101492542UTR,promoter,exon,gene body5.96e-014.84e-013.55e+003.88e-046.84e-041.12e-01
LIHCcg01519063chr8:101493065CGI:chr8:101493284-101494202promoter,gene body7.49e-016.15e-014.33e+001.46e-053.81e-051.33e-01
KIRPcg14202477chr8:101492631CGI:chr8:101492250-101492542UTR,promoter,exon,gene body4.75e-013.61e-012.77e+005.55e-037.79e-031.14e-01
CHOLcg23973429chr8:101492518CGI:chr8:101492250-101492542UTR,promoter,exon,gene body1.29e-012.60e-01-3.02e+002.51e-031.19e-02-1.31e-01
CHOLcg03023152chr8:101493328CGI:chr8:101493284-101494202promoter,gene body9.67e-022.19e-01-3.32e+009.08e-041.01e-02-1.23e-01
CHOLcg10899768chr8:101494407CGI:chr8:101493284-101494202promoter,gene body2.49e-015.73e-01-2.95e+003.19e-031.32e-02-3.24e-01
CHOLcg14202477chr8:101492631CGI:chr8:101492250-101492542UTR,promoter,exon,gene body2.89e-014.82e-01-2.80e+005.09e-031.63e-02-1.93e-01
CHOLcg01519063chr8:101493065CGI:chr8:101493284-101494202promoter,gene body2.63e-016.31e-01-3.54e+004.02e-048.32e-03-3.67e-01
CHOLcg08988797chr8:101493285CGI:chr8:101493284-101494202promoter,gene body1.80e-012.86e-01-2.06e+003.90e-024.26e-02-1.06e-01
CHOLcg18899777chr8:101494323CGI:chr8:101493284-101494202promoter,gene body2.93e-015.42e-01-2.65e+007.96e-031.92e-02-2.49e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg03023152chr8:101493328CGI:chr8:101493284-101494202promoter,gene body1.05e-012.27e-01-1.23e+017.90e-352.26e-33-1.21e-01
BRCAcg10899768chr8:101494407CGI:chr8:101493284-101494202promoter,gene body2.13e-014.43e-01-1.31e+012.54e-391.68e-37-2.30e-01
BRCAcg05458052chr8:101491664CGI:chr8:101492250-101492542promoter1.07e-012.79e-01-1.31e+013.69e-392.36e-37-1.72e-01
BRCAcg17885542chr8:101491716CGI:chr8:101492250-101492542promoter1.45e-013.00e-01-1.28e+011.41e-376.55e-36-1.55e-01
BRCAcg20342184chr8:101491742CGI:chr8:101492250-101492542promoter1.23e-012.83e-01-1.34e+018.29e-417.96e-39-1.60e-01
BRCAcg14202477chr8:101492631CGI:chr8:101492250-101492542UTR,promoter,exon,gene body2.46e-014.49e-01-1.28e+011.48e-376.85e-36-2.03e-01
BRCAcg01519063chr8:101493065CGI:chr8:101493284-101494202promoter,gene body2.42e-014.95e-01-1.36e+014.80e-426.44e-40-2.53e-01
BRCAcg08988797chr8:101493285CGI:chr8:101493284-101494202promoter,gene body1.11e-012.50e-01-1.25e+019.88e-363.27e-34-1.39e-01
BRCAcg18899777chr8:101494323CGI:chr8:101493284-101494202promoter,gene body2.47e-014.80e-01-1.35e+012.76e-413.00e-39-2.33e-01
LUADcg10899768chr8:101494407CGI:chr8:101493284-101494202promoter,gene body2.03e-013.18e-01-3.10e+001.97e-035.04e-03-1.15e-01
LUADcg18899777chr8:101494323CGI:chr8:101493284-101494202promoter,gene body2.15e-013.48e-01-3.96e+007.45e-057.73e-04-1.34e-01
LIHCcg05458052chr8:101491664CGI:chr8:101492250-101492542promoter2.92e-011.33e-012.36e+001.83e-022.25e-021.59e-01
KIRPcg03650674chr8:101493758CGI:chr8:101493284-101494202promoter,gene body1.99e-015.51e-022.44e+001.48e-022.18e-021.44e-01
KIRPcg18004756chr8:101492254CGI:chr8:101492250-101492542promoter1.85e-015.24e-022.94e+003.24e-038.06e-031.32e-01
KIRPcg25330243chr8:101492273CGI:chr8:101492250-101492542promoter1.86e-014.23e-023.02e+002.50e-036.82e-031.43e-01
KIRPcg16435779chr8:101492219CGI:chr8:101492250-101492542promoter1.99e-016.55e-022.11e+003.53e-023.93e-021.34e-01
KIRPcg11397370chr8:101492251CGI:chr8:101492250-101492542promoter2.50e-011.46e-012.33e+002.00e-022.67e-021.04e-01
KIRPcg03780851chr8:101492336CGI:chr8:101492250-101492542promoter2.56e-011.05e-012.01e+004.44e-024.60e-021.50e-01

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Exon skipping events with PSI in TCGA for GRHL2

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for GRHL2

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for GRHL2

check buttonTFs related to GRHL2.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
LGGZNF235GRHL24.63e+009.84e-014.16e+001.02e-02Male-biased
READDUX4GRHL23.92e+006.42e-034.86e+009.90e-01Female-biased
READDUXAGRHL23.88e+001.30e-024.64e+009.81e-01Female-biased
READMIXL1GRHL24.04e+006.82e-034.97e+009.90e-01Female-biased
READPOU2F2GRHL23.26e+001.77e-034.55e+009.92e-01Female-biased
READPOU3F3GRHL22.95e+005.27e-044.61e+009.93e-01Female-biased
READPOU4F2GRHL23.13e+001.87e-034.40e+009.89e-01Female-biased
READPOU5F1BGRHL23.38e+003.24e-034.51e+009.90e-01Female-biased
READSOX17GRHL23.31e+007.15e-034.21e+009.81e-01Female-biased
READSOX6GRHL23.34e+004.38e-034.38e+009.87e-01Female-biased
READSTAT2GRHL22.31e+004.90e-043.97e+009.82e-01Female-biased
READYY1GRHL23.32e+006.95e-034.23e+009.81e-01Female-biased
READZKSCAN2GRHL23.15e+009.21e-044.63e+009.93e-01Female-biased
READZNF25GRHL22.64e+005.15e-044.29e+009.89e-01Female-biased
READZNF334GRHL22.67e+001.45e-044.73e+009.95e-01Female-biased
READZNF570GRHL22.33e+002.46e-044.21e+009.88e-01Female-biased
READZNF620GRHL23.10e+004.62e-034.12e+009.81e-01Female-biased
READZNF713GRHL23.39e+005.79e-034.35e+009.85e-01Female-biased
READZNF74GRHL23.49e+008.32e-034.36e+009.82e-01Female-biased
READZNF79GRHL22.44e+001.05e-044.60e+009.94e-01Female-biased
THYMPOU3F3GRHL23.23e+003.61e-034.16e+009.83e-01Female-biased
THYMPOU5F1BGRHL23.76e+009.66e-034.46e+009.82e-01Female-biased
THYMZKSCAN2GRHL23.45e+006.88e-034.22e+009.81e-01Female-biased
THYMZNF25GRHL23.10e+002.65e-034.11e+009.83e-01Female-biased
THYMZNF334GRHL22.85e+009.72e-044.11e+009.85e-01Female-biased
THYMZNF79GRHL22.75e+001.15e-033.96e+009.81e-01Female-biased

check buttonGRHL2 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.
related_gene

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Sex-biased RBP-ES network for GRHL2

check buttonRBPs related to ES in GRHL2.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
LUADHNRNPA1L2exon_skip_4852509.08e+009.86e-018.75e+009.93e-03Male-biased

check buttonGRHL2 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type
ENSG00000083307SNHG4,hsa-mir-665,GRHL2Male-specific ceRNATCGA-BLCA
ENSG00000083307AC026362.1,hsa-mir-665,GRHL2Male-specific ceRNATCGA-BLCA
ENSG00000083307OGFRP1,hsa-mir-665,GRHL2Male-specific ceRNATCGA-BLCA
ENSG00000083307LINC01018,hsa-mir-122,GRHL2Tumor-specific sex-biased ceRNATCGA-KIRP
ENSG00000083307GPR176-DT,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307LINC01783,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307BX284668.2,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307Z95331.1,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307NPHP3-AS1,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307GRASLND,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307HAGLR,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307AC106795.2,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP
ENSG00000083307AL157832.1,hsa-mir-665,GRHL2Male-specific ceRNATCGA-KIRP

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs7017753chr8:97847209:T:C-0.04093931857461220.0111617074260786LUADFemale-baised eQTL
rs2515219chr8:98811822:G:A-0.07300443069472020.0415349982113688COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs73701931chr8:101573038:C:Ggene0.1204152515527980.0252607993194232COADMale-baised eQTL
rs73701932chr8:101574903:T:Cgene0.1150658322507080.0265508066739517COADMale-baised eQTL
rs11996495chr8:101565555:T:Agene0.1066963144250560.0290577442802998COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000083307
CpG Site: cg14686437
Position to Gene: gene,enhancer
Male Effect: -
Female Effect: -0.394991055936746

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg14686437chr8:101495609gene,enhancer-0.3949910559367464.23964797754711e-12-0.47215644359390932.7622996496732996e-15LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of GRHL2

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000083307GRHL2C1837640Deafness, Autosomal Dominant 281CTD_human
ENSG00000083307GRHL2C4014987Nail and tooth abnormalities, marginal palmoplantar keratoderma, oral hyperpigmentation syndrome1CTD_human