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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000074964

Summary for ARHGEF10L

check button Gene summary

Gene informationEnsembl ID

ENSG00000074964

Gene symbol

ARHGEF10L

Gene nameRho guanine nucleotide exchange factor 10 like
HGNC

25540

Entrez ID

55160

Gene typeprotein_coding
SynonymsARHGEF10L|FLJ10521|KIAA1626
UniProtAcc

Q9HCE6


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for ARHGEF10L

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
ARHGEF10L3.82e+03-1.68e+003.12e-01-5.39e+007.17e-086.71e-07CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

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Sex-biased somatic mutation for ARHGEF10L

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for ARHGEF10L

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
CHOLcg10115348chr1:17539158CGI:chr1:17539434-17540048promoter7.75e-016.64e-012.61e+009.04e-032.00e-021.12e-01
CHOLcg10123662chr1:17539218CGI:chr1:17539434-17540048promoter5.32e-013.77e-012.32e+002.01e-023.30e-021.55e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BLCAcg10115348chr1:17539158CGI:chr1:17539434-17540048promoter6.20e-017.52e-01-2.63e+008.49e-031.24e-02-1.33e-01
ESCAcg10115348chr1:17539158CGI:chr1:17539434-17540048promoter5.89e-014.00e-012.15e+003.12e-024.42e-021.89e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
KIRPcg10115348chr1:17539158CGI:chr1:17539434-17540048promoter8.27e-017.03e-013.13e+001.72e-035.42e-031.24e-01

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Exon skipping events with PSI in TCGA for ARHGEF10L

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
CHOLexon_skip_20917.85e-019.35e-01-2.57e+001.02e-022.22e-02-1.50e-01

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for ARHGEF10L

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for ARHGEF10L

check buttonTFs related to ARHGEF10L.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonARHGEF10L related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for ARHGEF10L

check buttonRBPs related to ES in ARHGEF10L.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
UVMBRUNOL4exon_skip_21237.38e+009.83e-017.03e+005.17e-03Male-biased
UVMBRUNOL5exon_skip_21237.40e+009.83e-017.06e+005.20e-03Male-biased
UVMhnRNPLLexon_skip_21237.28e+009.83e-016.93e+005.21e-03Male-biased
LIHCSRSF9exon_skip_20766.20e+001.91e-036.81e+009.82e-01Female-biased
PCPGIGF2BP1exon_skip_20831.02e+019.84e-019.92e+001.43e-02Male-biased
MESOIGF2BP1exon_skip_20839.89e+005.62e-031.03e+019.93e-01Female-biased
KICHIGF2BP1exon_skip_20839.82e+003.15e-031.02e+019.95e-01Female-biased

check buttonARHGEF10L related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs6659022chr1:22658211:C:T-0.1125024040821220.00847021101574495LUADFemale-baised eQTL
rs6603859chr1:16379580:G:T--0.04627998205334040.0111520003982044LUADFemale-baised eQTL
rs11260738chr1:16374298:G:A--0.04508770780200770.0163990082463092LUADFemale-baised eQTL
rs2977238chr1:17231627:G:A-0.04673986479943440.0229202641577578LUADFemale-baised eQTL
rs2977237chr1:17231103:G:A-0.04546943836231160.024901886132702LUADFemale-baised eQTL
rs3003409chr1:17231342:A:C-0.04478191019301760.0307466207831863LUADFemale-baised eQTL
rs74705609chr1:17272972:C:T-0.08464711112560720.0332431336308799LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs78128878chr1:26894134:T:C-0.1623949440103920.0425482643451533PAADMale-baised eQTL
rs113849058chr1:26896515:C:T-0.1624507005049230.0427439672064585PAADMale-baised eQTL
rs769897chr1:9039668:A:G-0.2459269958183690.00667853859479137SARCMale-baised eQTL
rs77855246chr1:20493113:C:A-0.1777615782600630.0124278221334943SARCMale-baised eQTL
rs113240820chr1:26882675:G:T-0.1731135087403490.0206862510785639SARCMale-baised eQTL
rs141847393chr1:26885718:T:C-0.1731135087403490.0206862510785639SARCMale-baised eQTL
rs144171499chr1:26869648:G:A-0.1647562620266270.0336166628425704SARCMale-baised eQTL
rs139297081chr1:26873616:A:G-0.1647562620266270.0336166628425704SARCMale-baised eQTL
rs113476222chr1:26873629:G:A-0.1647562620266270.0336166628425704SARCMale-baised eQTL
rs75584730chr1:26875006:G:A-0.1647562620266270.0336166628425704SARCMale-baised eQTL
rs76995736chr1:26877382:C:A-0.1647562620266270.0336166628425704SARCMale-baised eQTL
rs6426681chr1:21382342:G:A-0.14313279828480.0290082894525843LGGMale-baised eQTL
rs2270979chr1:17696795:C:Tgene-0.0709775988878580.0119240975195729KIRCMale-baised eQTL
rs2270978chr1:17696870:C:Tgene,CDS,exon,UTR-0.0709775988878580.0119240975195729KIRCMale-baised eQTL
rs2354290chr1:17693366:A:Ggene-0.07007349747539860.013104133502659KIRCMale-baised eQTL
rs10888050chr1:17695994:T:Cgene-0.07007349747539860.013104133502659KIRCMale-baised eQTL
rs1416853chr1:17698385:G:C--0.06901210316528460.0196234584019182KIRCMale-baised eQTL
rs12023874chr1:17699117:A:G--0.06925084392362040.0203169154817582KIRCMale-baised eQTL
rs12023877chr1:17699138:A:C--0.06925084392362040.0203169154817582KIRCMale-baised eQTL
rs4920620chr1:17696659:A:Ggene-0.06876529820135140.0227543611243807KIRCMale-baised eQTL
rs11203435chr1:17683738:T:Agene0.07081480418184970.0301876418201584KIRCMale-baised eQTL
rs12729433chr1:17686594:C:Ggene0.07008944117572850.0349964379060506KIRCMale-baised eQTL
rs6689540chr1:17687325:T:Cgene0.06997520180845850.0359091329330669KIRCMale-baised eQTL
rs74061959chr1:17689667:G:Agene0.06997520180845850.0359091329330669KIRCMale-baised eQTL
rs72879056chr1:26609222:A:G-0.09899776687255960.0360830977153774KIRCMale-baised eQTL
rs2279815chr1:17695571:G:Tgene-0.06525350555020770.0396781083275502KIRCMale-baised eQTL
rs905390chr1:17691760:A:Cgene-0.06822197478171830.0478609446292865KIRCMale-baised eQTL
rs905389chr1:17694911:T:Cgene,exon-0.06365520761635190.0491981166601735KIRCMale-baised eQTL
rs10917288chr1:22745352:C:G-0.07199714188783790.00883349951104876BLCAMale-baised eQTL
rs4263970chr1:22737437:T:C-0.0597056140535980.0131583482564403BLCAMale-baised eQTL
rs4612601chr1:22740551:G:A-0.0593770052514890.015324897292624BLCAMale-baised eQTL
rs12567471chr1:14456462:T:C--0.06332010133962790.0156516611837671BLCAMale-baised eQTL
rs56867169chr1:7893471:G:A-0.1214057236223680.0165393696244054BLCAMale-baised eQTL
rs6690681chr1:14456093:G:T--0.06114710871230620.021162837208315BLCAMale-baised eQTL
rs11121271chr1:8933633:C:T-0.0544611423130940.0224130955301497BLCAMale-baised eQTL
rs2992758chr1:18480011:G:C-0.07290547373694590.0226743727090737BLCAMale-baised eQTL
rs882025chr1:22723859:G:A-0.05671037096768240.0245353724693272BLCAMale-baised eQTL
rs1889862chr1:18483992:A:C-0.07315363082993840.0250301782482576BLCAMale-baised eQTL
rs882024chr1:22723769:T:G-0.05652204051027230.0274951903952616BLCAMale-baised eQTL
rs2904122chr1:22733291:T:C-0.05562611222346820.0330333874571061BLCAMale-baised eQTL
rs2869512chr1:22733338:T:C-0.05562611222346820.0330333874571061BLCAMale-baised eQTL
rs6662664chr1:14451274:A:G--0.05989915307976390.0341701365702234BLCAMale-baised eQTL
rs7530275chr1:14457160:G:A--0.05932695595674050.0375486602169478BLCAMale-baised eQTL
rs6691839chr1:26232815:G:T--0.05840733187052830.0398204233649063BLCAMale-baised eQTL
rs2486769chr1:14459813:T:G--0.05871227541820580.0410310465837007BLCAMale-baised eQTL
rs35066330chr1:22814990:G:A--0.05479094954406520.041614592986689BLCAMale-baised eQTL
rs6671980chr1:14453163:T:G--0.05879803520077080.0425529467930874BLCAMale-baised eQTL
rs6659078chr1:14450236:A:C--0.05817164973174890.0435052971539657BLCAMale-baised eQTL
rs2486768chr1:14459350:C:T--0.05803440172285020.0436009406583397BLCAMale-baised eQTL
rs1360920chr1:18479204:C:T-0.06697436085712360.048200106671576BLCAMale-baised eQTL
rs17397415chr1:14455420:G:A--0.05796978253674830.0482047685170252BLCAMale-baised eQTL
rs4614253chr1:14456860:A:T-0.0651089819774550.0456972613949715LUADMale-baised eQTL
rs4655167chr1:20250537:G:C--0.0959621424136660.0133527304625469COADMale-baised eQTL
rs2473625chr1:14584737:T:C-0.0849314271326920.0135153360380401COADMale-baised eQTL
rs517267chr1:14608808:G:T-0.07954630502548680.0176484026646507COADMale-baised eQTL
rs909948chr1:18498709:G:A-0.1055246469486440.0183064288702941COADMale-baised eQTL
rs640109chr1:14608830:T:C-0.0782747132986820.0215713091091347COADMale-baised eQTL
rs12025574chr1:14595676:G:A--0.07858767782058880.0227764862009618COADMale-baised eQTL
rs9430635chr1:9678728:C:G-0.06044341398070050.0270480096949101COADMale-baised eQTL
rs9919249chr1:18496520:C:A-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs9919202chr1:18496628:G:T-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs9919287chr1:18496736:T:C-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs28582432chr1:18496833:C:A-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs2009682chr1:18497468:A:G-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs9919318chr1:18498112:T:G-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs9919236chr1:18498317:G:T-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs12385722chr1:18498890:T:C-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs11261024chr1:18499307:G:A-0.1051754301756240.0297366036089391COADMale-baised eQTL
rs11261025chr1:18500216:A:G-0.1049235971088050.0304309860566898COADMale-baised eQTL
rs12116479chr1:14591407:G:C--0.08055240736446550.0313754023472346COADMale-baised eQTL
rs12074637chr1:18493293:A:T-0.1110162513161390.0334437053370733COADMale-baised eQTL
rs58026570chr1:18494000:A:T-0.1110162513161390.0334437053370733COADMale-baised eQTL
rs6676514chr1:14600949:A:G-0.07244369697012710.0354162045521278COADMale-baised eQTL
rs2185151chr1:24743448:G:A--0.06199488497310980.0398390461560388COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000074964
CpG Site: cg21645973
Position to Gene: gene,exon,CDS
Male Effect: -0.370281835320747
Female Effect: -
eQTM boxplot analysisGene ID: ENSG00000074964
CpG Site: cg06980341
Position to Gene: gene
Male Effect: -0.400059075814293
Female Effect: -
eQTM boxplot analysisGene ID: ENSG00000074964
CpG Site: cg25979543
Position to Gene: gene
Male Effect: -
Female Effect: -0.259306819452194
eQTM boxplot analysisGene ID: ENSG00000074964
CpG Site: cg06980341
Position to Gene: gene
Male Effect: -0.188948322381275
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg21645973chr1:17587575gene,exon,CDS-0.3702818353207471.79700257055504e-07-0.57709913633752224.973204766760202e-10PAAD
cg06980341chr1:17548107gene-0.4000590758142937.53520807602135e-09-0.456916915280401579.230989656658904e-12KIRP
cg06980341chr1:17548107gene-0.1889483223812752.82410550600799e-05-0.333189521223397732.426142248775448e-09BLCA

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg25979543chr1:17561609gene-0.2593068194521941.08792570586928e-05-0.34754203514242091.189378957908425e-08LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type
exon_skip_2091chr1:17634547:17634562In-framers11261095chr1:18148067:C:ADistant downstream-0.1065982698098850.0412597640339755KIRCFemale-baised sQTL
exon_skip_2106chr1:17648553:17648675Frame-shiftrs11579504chr1:17306751:A:GDistant upstream-0.01992843148800930.049538574686242LUADFemale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers708090chr1:17833038:C:ADistant downstream0.1214680282899730.0323527501688841BLCAFemale-baised sQTL

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type
exon_skip_2106chr1:17648553:17648675Frame-shiftrs4920483chr1:18355438:T:CDistant downstream0.02130470007036110.0295649145585756LUADMale-baised sQTL
exon_skip_2075chr1:17613057:17613174In-framers10788679chr1:17590467:A:GDistant upstream-0.02526830731135360.00249502754377808LGGMale-baised sQTL
exon_skip_2075chr1:17613057:17613174In-framers10788678chr1:17590424:T:ADistant upstream-0.02390302039306680.00293576024907881LGGMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers4920476chr1:18316855:C:TDistant downstream0.06758880843507980.00373691545518312COADMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers223211chr1:18318978:A:GDistant downstream0.07512406923325490.00687524948776823COADMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers11260982chr1:18318233:G:CDistant downstream0.06386542007550370.0221746912226327COADMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers72655178chr1:18311074:C:TDistant downstream-0.06551194226369680.0241201031939044COADMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers4920630chr1:17747847:C:ADistant downstream-0.0394456081848890.0247358561704933COADMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers708083chr1:18310766:T:GDistant downstream0.06499367906658760.0435590685467332COADMale-baised sQTL
exon_skip_2091chr1:17634547:17634562In-framers4920475chr1:18316841:C:TDistant downstream0.05813603160165980.0483182073012826COADMale-baised sQTL

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of ARHGEF10L

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource