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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000065485

Summary for PDIA5

check button Gene summary

Gene informationEnsembl ID

ENSG00000065485

Gene symbol

PDIA5

Gene nameprotein disulfide isomerase family A member 5
HGNC

24811

Entrez ID

10954

Gene typeprotein_coding
SynonymsPDIA5|PDIR|FLJ30401
UniProtAcc

Q14554


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for PDIA5

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
PDIA52.76e+03-1.81e+002.50e-01-7.24e+004.55e-131.27e-11CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
PDIA58.21e+02-1.35e+001.80e-01-7.53e+004.89e-145.30e-13KICH

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Sex-biased somatic mutation for PDIA5

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for PDIA5

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg10098541chr3:123066803CGI:chr3:123066887-123067753promoter2.88e-011.70e-013.11e+001.85e-031.31e-021.18e-01
BRCAcg26084141chr3:123068048CGI:chr3:123066887-123067753promoter,gene body2.63e-011.63e-012.37e+001.77e-023.34e-021.00e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg26084141chr3:123068048CGI:chr3:123066887-123067753promoter,gene body2.63e-013.98e-01-8.78e+001.58e-187.55e-18-1.35e-01
HNSCcg00439384chr3:123066711CGI:chr3:123066887-123067753promoter4.07e-012.60e-012.69e+007.10e-031.57e-021.47e-01
HNSCcg10098541chr3:123066803CGI:chr3:123066887-123067753promoter3.92e-012.62e-012.35e+001.86e-022.64e-021.30e-01
BLCAcg00439384chr3:123066711CGI:chr3:123066887-123067753promoter2.95e-013.97e-01-2.18e+002.92e-023.48e-02-1.02e-01
BLCAcg10098541chr3:123066803CGI:chr3:123066887-123067753promoter2.70e-013.76e-01-2.51e+001.22e-021.98e-02-1.06e-01
KIRPcg00439384chr3:123066711CGI:chr3:123066887-123067753promoter2.92e-011.66e-013.55e+003.91e-042.27e-031.27e-01

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Exon skipping events with PSI in TCGA for PDIA5

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for PDIA5

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for PDIA5

check buttonTFs related to PDIA5.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonPDIA5 related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for PDIA5

check buttonRBPs related to ES in PDIA5.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
THYMG3BP2exon_skip_3771859.37e+009.90e-019.03e+007.37e-03Male-biased
LUSCFMR1exon_skip_3771788.43e+009.43e-038.79e+009.85e-01Female-biased
KIRPRBM5exon_skip_3771818.89e+002.53e-039.34e+009.94e-01Female-biased
ESCAFMR1exon_skip_3771788.10e+001.32e-028.51e+009.81e-01Female-biased
ESCARBM4exon_skip_3771937.97e+009.82e-017.53e+001.01e-02Male-biased
READFMR1exon_skip_3771788.35e+004.39e-038.75e+009.90e-01Female-biased
THCAFMR1exon_skip_3771788.66e+009.87e-018.35e+007.51e-03Male-biased
PCPGRBM5exon_skip_3771819.05e+001.47e-029.34e+009.82e-01Female-biased
PCPGU2AF2exon_skip_3771759.39e+009.94e-018.97e+003.32e-03Male-biased
MESOU2AF2exon_skip_3771758.72e+001.28e-039.28e+009.95e-01Female-biased
PAADRBM5exon_skip_3771818.95e+003.24e-039.35e+009.94e-01Female-biased
PAADU2AF2exon_skip_3771758.93e+004.00e-039.31e+009.93e-01Female-biased
SKCMU2AF2exon_skip_3771758.84e+005.11e-039.27e+009.92e-01Female-biased

check buttonPDIA5 related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type
ENSG00000065485AC108134.3,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AL021368.2,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AL390208.1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485FAM66C,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AL359094.1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AC092375.2,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485ITGB1-DT,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485ZNF341-AS1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485FOXD3-AS1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485CCDC18-AS1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485CYTOR,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485HRAT92,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AC091563.1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485MIR497HG,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AC073508.3,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AC099850.1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485ARHGAP27P1-BPTFP1-KPNA2P3,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485RNF213-AS1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AL118505.1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH
ENSG00000065485AC016026.1,hsa-mir-216a,PDIA5Female-specific ceRNATCGA-KICH

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs6762769chr3:132865876:A:G-0.160328097997890.040592291819537GBMFemale-baised eQTL
rs2249154chr3:132873519:G:A--0.160328097997890.040592291819537GBMFemale-baised eQTL
rs1452146chr3:132865345:G:A-0.1611768305704740.0482726058072363GBMFemale-baised eQTL
rs2600960chr3:132878078:G:T--0.1611768305704740.0482726058072363GBMFemale-baised eQTL
rs2712305chr3:132878932:T:C--0.1611768305704740.0482726058072363GBMFemale-baised eQTL
rs4854653chr3:132881701:G:A--0.1611768305704740.0482726058072363GBMFemale-baised eQTL
rs67060255chr3:117369326:C:A-0.1024085182295750.0194776191832069SARCFemale-baised eQTL
rs12631006chr3:115421660:T:C-0.2921741805549350.0351254113632162KIRPFemale-baised eQTL
rs12638811chr3:115421661:G:T-0.2921741805549350.0351254113632162KIRPFemale-baised eQTL
rs7620329chr3:118556670:A:G--0.06841214616402460.0310256514942765LGGFemale-baised eQTL
rs6438453chr3:118556463:C:A--0.06847731873696160.036915225029136LGGFemale-baised eQTL
rs6438454chr3:118556492:C:G--0.06847731873696160.036915225029136LGGFemale-baised eQTL
rs59529658chr3:118672815:T:C-0.07914717902483340.0497017314159272LGGFemale-baised eQTL
rs6791894chr3:114843981:A:G--0.07646622314209820.00561054154371383LUADFemale-baised eQTL
rs9837746chr3:114831290:G:A--0.0738025222135830.00817230592466162LUADFemale-baised eQTL
rs2056535chr3:114801906:A:T--0.07359489623808180.00866050514183927LUADFemale-baised eQTL
rs2140347chr3:114813589:G:A--0.07359489623808180.00866050514183927LUADFemale-baised eQTL
rs2399509chr3:114814255:C:T--0.07359489623808180.00866050514183927LUADFemale-baised eQTL
rs4146802chr3:114847102:A:C--0.07103334186319310.00997763704639284LUADFemale-baised eQTL
rs12490724chr3:126548388:C:A--0.05218424805316350.0133840654816747LUADFemale-baised eQTL
rs9868154chr3:126546754:A:T-0.04984171380617390.0196456950070689LUADFemale-baised eQTL
rs11713326chr3:126549032:G:A--0.05039867778076110.0218861082262148LUADFemale-baised eQTL
rs55668869chr3:126549255:C:T--0.05039867778076110.0218861082262148LUADFemale-baised eQTL
rs677754chr3:114866157:T:C--0.0860201859278760.0224432521816464LUADFemale-baised eQTL
rs672825chr3:114868576:C:G--0.0860201859278760.0224432521816464LUADFemale-baised eQTL
rs666396chr3:114872986:T:C--0.0860201859278760.0224432521816464LUADFemale-baised eQTL
rs1589667chr3:114805000:C:T--0.06492578040754380.0247690048971501LUADFemale-baised eQTL
rs6803847chr3:126549190:T:C--0.05086809876090950.024956888939369LUADFemale-baised eQTL
rs1123373chr3:126546863:T:C--0.04438185577663560.0291955879023172LUADFemale-baised eQTL
rs79468740chr3:114788083:T:C-0.0659985844753220.0349861156815123LUADFemale-baised eQTL
rs16835554chr3:124530229:T:C-0.06878489009212390.0486439981239676LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs2034178chr3:123014236:G:A-0.2871089936436710.0127415710339524PCPGMale-baised eQTL
rs4854645chr3:132485966:G:A--0.0402549290559380.0215496227305606KIRPMale-baised eQTL
rs6793196chr3:132511644:G:A--0.04024656567528780.0216133118857255KIRPMale-baised eQTL
rs754993chr3:132525562:G:A--0.03875197132841470.0335788326132009KIRPMale-baised eQTL
rs6767884chr3:132545192:T:C--0.03824520959328770.043172390217858KIRPMale-baised eQTL
rs1574733chr3:125038474:T:C--0.0711351800250480.0430396340472105LGGMale-baised eQTL
rs9852194chr3:129423321:G:A--0.08155836303302860.0208962752568149BLCAMale-baised eQTL
rs9873063chr3:131675660:C:T--0.04080334966798950.0250496668709599BLCAMale-baised eQTL
rs62263546chr3:119198666:C:T-0.04209045320535030.0282518811040796BLCAMale-baised eQTL
rs62263547chr3:119199725:G:A-0.04209045320535030.0282518811040796BLCAMale-baised eQTL
rs11709534chr3:119196715:T:A-0.0420151059095510.0288259143591424BLCAMale-baised eQTL
rs6809166chr3:130341116:A:T--0.05069943330580720.030298252421043BLCAMale-baised eQTL
rs9872082chr3:129423461:T:C--0.07848916105592420.0324880418788365BLCAMale-baised eQTL
rs9852506chr3:129423511:G:A--0.07848916105592420.0324880418788365BLCAMale-baised eQTL
rs9872390chr3:129423633:T:A--0.07848916105592420.0324880418788365BLCAMale-baised eQTL
rs9872391chr3:129423634:T:A--0.07848916105592420.0324880418788365BLCAMale-baised eQTL
rs9852348chr3:129423428:G:A--0.07795348499379530.0348900445780232BLCAMale-baised eQTL
rs9863811chr3:129418903:A:G--0.07539630490366270.0486642874889092BLCAMale-baised eQTL
rs11712964chr3:126318061:G:T--0.09059536753139790.023009879630946COADMale-baised eQTL
rs10934492chr3:119370923:A:G-0.08555013545841920.0323288886737584COADMale-baised eQTL
rs147781636chr3:119372511:G:A-0.1100585409500950.0368492751611713COADMale-baised eQTL
rs60841305chr3:126309809:A:G--0.08617489234776390.0373781462300554COADMale-baised eQTL
rs17203055chr3:119365484:A:G-0.1066176871288670.043942704205429COADMale-baised eQTL
rs79411340chr3:119368996:G:A-0.1090444529034020.0440288839990619COADMale-baised eQTL
rs12636459chr3:119368987:T:G-0.0821385567240020.045248548913049COADMale-baised eQTL
rs7641045chr3:119853012:G:C-0.05100566018612850.0475520092191089COADMale-baised eQTL
rs9289277chr3:126319497:C:A--0.08746805899982190.0482221695219129COADMale-baised eQTL
rs732737chr3:126993915:C:T-0.1142866129019190.0495586662323711COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000065485
CpG Site: cg16720405
Position to Gene: gene,enhancer
Male Effect: -0.340261681951104
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg16720405chr3:123071331gene,enhancer-0.3402616819511048.0981082222231e-05-0.32353101479461587.907460681752991e-07LUAD

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type
exon_skip_377198chr3:123130479:123130616Frame-shiftrs111283456chr3:122692914:T:CDistant upstream-0.1247816132995320.0219568549127286PCPGMale-baised sQTL
exon_skip_377198chr3:123130479:123130616Frame-shiftrs9832142chr3:122711091:C:TDistant upstream0.108607235049020.0461372989142781PCPGMale-baised sQTL
exon_skip_377198chr3:123130479:123130616Frame-shiftrs930123chr3:122714715:G:ADistant upstream0.108607235049020.0461372989142781PCPGMale-baised sQTL

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription
sQTM boxplot analysisEX ID: exon_skip_377198
CpG Site: cg22707878
Position to EX: Distant upstream
Male Effect: -
Female Effect: 0.116746334401549

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type
exon_skip_377198chr3:123130479:123130616cg22707878chr3:122886001Distant upstream0.1167463344015491.22267257388969e-050.44359828543335322.692023614960341e-06Frame-shiftLIHC

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of PDIA5

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource