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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000002933

Summary for TMEM176A

check button Gene summary

Gene informationEnsembl ID

ENSG00000002933

Gene symbol

TMEM176A

Gene nametransmembrane protein 176A
HGNC

24930

Entrez ID

55365

Gene typeprotein_coding
SynonymsTMEM176A|HCA112|MS4B1
UniProtAcc

Q96HP8


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for TMEM176A

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
TMEM176A3.80e+031.10e+002.51e-014.37e+001.25e-053.74e-05LUAD
TMEM176A1.22e+031.49e+003.24e-014.60e+004.30e-062.13e-05THCA
TMEM176A2.79e+041.13e+002.37e-014.77e+001.81e-066.15e-06KIRP
TMEM176A1.85e+04-3.36e+004.86e-01-6.90e+005.13e-121.16e-10CHOL

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

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Sex-biased somatic mutation for TMEM176A

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for TMEM176A

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter2.37e-013.66e-01-2.06e+003.98e-024.59e-02-1.29e-01
ESCAcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter4.55e-013.43e-012.14e+003.21e-024.47e-021.12e-01
ESCAcg14991769chr7:150800069CGI:chr7:150799721-150801118promoter5.51e-014.34e-012.12e+003.37e-024.53e-021.17e-01
ESCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter3.61e-012.61e-012.52e+001.17e-022.91e-021.00e-01
ACCcg05726600chr7:150801506CGI:chr7:150799721-150801118promoter,gene body6.12e-017.38e-01-2.47e+001.35e-022.98e-02-1.26e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
KIRCcg05726600chr7:150801506CGI:chr7:150799721-150801118promoter,gene body1.60e-012.94e-01-5.35e+008.62e-084.40e-07-1.35e-01
HNSCcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter,exon,gene body5.90e-018.01e-01-4.71e+002.46e-061.20e-05-2.11e-01
LUSCcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter4.17e-011.34e-013.53e+004.19e-041.49e-032.83e-01
LUSCcg14991769chr7:150800069CGI:chr7:150799721-150801118promoter4.66e-012.22e-013.61e+003.09e-041.24e-032.43e-01
LUSCcg26385222chr7:150799989CGI:chr7:150799721-150801118promoter4.68e-012.49e-013.59e+003.32e-041.29e-032.19e-01
LUSCcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter2.20e-011.06e-013.26e+001.12e-032.80e-031.14e-01
LUSCcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter,exon,gene body6.43e-018.62e-01-3.14e+001.71e-033.74e-03-2.19e-01
BLCAcg04861380chr7:150800575CGI:chr7:150799721-150801118UTR,promoter,exon,gene body1.99e-012.41e-023.11e+001.88e-033.73e-031.75e-01
BLCAcg19336959chr7:150800615CGI:chr7:150799721-150801118UTR,promoter,exon,gene body2.05e-013.07e-023.00e+002.66e-034.92e-031.74e-01
BLCAcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter4.07e-012.16e-012.06e+003.92e-024.14e-021.92e-01
BLCAcg26385222chr7:150799989CGI:chr7:150799721-150801118promoter4.61e-013.13e-012.59e+009.47e-031.35e-021.48e-01
BLCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter3.34e-011.26e-013.33e+008.61e-042.02e-032.08e-01
BLCAcg25124476chr7:150800650CGI:chr7:150799721-150801118UTR,promoter,exon,gene body2.53e-019.46e-022.98e+002.90e-035.27e-031.58e-01
BLCAcg00417408chr7:150800652CGI:chr7:150799721-150801118UTR,promoter,exon,gene body2.74e-011.14e-012.89e+003.82e-036.57e-031.61e-01
BLCAcg07769074chr7:150800672CGI:chr7:150799721-150801118UTR,promoter,exon,gene body1.68e-015.79e-022.63e+008.49e-031.24e-021.10e-01
BLCAcg08359956chr7:150801117CGI:chr7:150799721-150801118promoter,gene body3.25e-011.93e-012.18e+002.94e-023.31e-021.32e-01
CHOLcg08359956chr7:150801117CGI:chr7:150799721-150801118promoter,gene body3.81e-011.29e-012.43e+001.50e-022.65e-022.52e-01
CHOLcg03964111chr7:150801405CGI:chr7:150799721-150801118promoter,gene body5.08e-012.10e-012.29e+002.23e-023.24e-022.97e-01
CHOLcg10409299chr7:150801755CGI:chr7:150799721-150801118promoter,exon,gene body7.43e-015.04e-013.10e+001.96e-031.07e-022.40e-01
CHOLcg07208344chr7:150802274CGI:chr7:150799721-150801118promoter,exon,CDS,gene body8.51e-016.09e-013.54e+004.02e-048.32e-032.42e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg04861380chr7:150800575CGI:chr7:150799721-150801118UTR,promoter,exon,gene body1.51e-012.28e-029.05e+001.48e-197.69e-191.29e-01
BRCAcg05017199chr7:150799977CGI:chr7:150799721-150801118promoter2.87e-019.07e-028.44e+003.14e-171.36e-161.96e-01
BRCAcg14991769chr7:150800069CGI:chr7:150799721-150801118promoter4.01e-011.86e-018.77e+001.85e-188.80e-182.15e-01
BRCAcg26385222chr7:150799989CGI:chr7:150799721-150801118promoter3.55e-012.04e-017.62e+002.59e-148.95e-141.52e-01
BRCAcg02244695chr7:150800258CGI:chr7:150799721-150801118promoter2.37e-011.05e-016.93e+004.36e-121.27e-111.32e-01
BRCAcg25124476chr7:150800650CGI:chr7:150799721-150801118UTR,promoter,exon,gene body1.99e-018.56e-026.46e+001.04e-102.72e-101.13e-01
BRCAcg00417408chr7:150800652CGI:chr7:150799721-150801118UTR,promoter,exon,gene body2.14e-019.44e-027.02e+002.26e-126.74e-121.20e-01
BRCAcg08359956chr7:150801117CGI:chr7:150799721-150801118promoter,gene body4.09e-013.04e-016.01e+001.84e-094.37e-091.05e-01
BRCAcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter,exon,gene body7.66e-019.16e-01-8.93e+004.30e-192.16e-18-1.50e-01
LUADcg19336959chr7:150800615CGI:chr7:150799721-150801118UTR,promoter,exon,gene body1.28e-012.49e-023.36e+007.93e-042.75e-031.03e-01
LUADcg00417408chr7:150800652CGI:chr7:150799721-150801118UTR,promoter,exon,gene body2.02e-018.64e-023.11e+001.90e-034.92e-031.15e-01
LIHCcg13459303chr7:150802188CGI:chr7:150799721-150801118promoter,exon,gene body6.06e-014.88e-012.10e+003.61e-023.86e-021.17e-01
KIRPcg14991769chr7:150800069CGI:chr7:150799721-150801118promoter2.04e-016.44e-022.87e+004.17e-039.48e-031.40e-01

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Exon skipping events with PSI in TCGA for TMEM176A

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
LUADexon_skip_4723606.77e-017.82e-01-3.76e+001.72e-047.60e-04-1.05e-01
CHOLexon_skip_4723607.54e-019.06e-01-2.41e+001.58e-022.87e-02-1.52e-01

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI
KIRPexon_skip_4723607.69e-018.79e-01-3.38e+007.22e-046.99e-03-1.10e-01

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RNA A-to-I editing events in TCGA for TMEM176A

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for TMEM176A

check buttonTFs related to TMEM176A.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
PCPGPLAGL2TMEM176A3.48e+009.30e-034.30e+009.82e-01Female-biased

check buttonTMEM176A related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for TMEM176A

check buttonRBPs related to ES in TMEM176A.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
SKCMZC3H10exon_skip_4723457.10e+002.64e-037.60e+009.88e-01Female-biased
SARCBRUNOL6exon_skip_4723456.61e+005.73e-037.03e+009.81e-01Female-biased
SARCZC3H10exon_skip_4723457.13e+002.37e-037.65e+009.88e-01Female-biased

check buttonTMEM176A related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs2240986chr7:157409380:C:T-0.2007928436886230.044879527021699GBMFemale-baised eQTL
rs714429chr7:144456641:T:C-0.1121430340121010.0157648462853003STADFemale-baised eQTL
rs2888075chr7:144456786:G:A-0.1059169020298320.029265647205511STADFemale-baised eQTL
rs62483108chr7:144442326:G:A-0.1093094221259430.032004604486872STADFemale-baised eQTL
rs6962238chr7:152642023:C:G--0.1127893578271020.0148246217002099LGGFemale-baised eQTL
rs13242554chr7:152642608:G:A--0.1127893578271020.0148246217002099LGGFemale-baised eQTL
rs10272702chr7:143261090:T:C-0.2177274100203670.000956594422757552BLCAFemale-baised eQTL
rs116131242chr7:147943620:T:G-0.321731550474270.00120856458205534BLCAFemale-baised eQTL
rs79051424chr7:147945441:C:T-0.321731550474270.00120856458205534BLCAFemale-baised eQTL
rs114515860chr7:147946074:G:A-0.321731550474270.00120856458205534BLCAFemale-baised eQTL
rs117609483chr7:147945736:A:T-0.2990262559024360.0024701532562307BLCAFemale-baised eQTL
rs76633493chr7:147947037:C:T-0.2990262559024360.0024701532562307BLCAFemale-baised eQTL
rs77187521chr7:147948068:A:G-0.2990262559024360.0024701532562307BLCAFemale-baised eQTL
rs77689119chr7:155898541:A:G-0.2453548250082580.0141530899549403BLCAFemale-baised eQTL
rs79567485chr7:155893852:C:A-0.2449568492448730.0147125259046715BLCAFemale-baised eQTL
rs55810549chr7:155895855:C:T-0.2449568492448730.0147125259046715BLCAFemale-baised eQTL
rs74454984chr7:155901136:C:A-0.2440245420452960.0151239168663698BLCAFemale-baised eQTL
rs140991464chr7:155902087:C:T-0.2440245420452960.0151239168663698BLCAFemale-baised eQTL
rs55639312chr7:155903662:G:T-0.2440245420452960.0151239168663698BLCAFemale-baised eQTL
rs74765187chr7:155904568:A:T-0.2440245420452960.0151239168663698BLCAFemale-baised eQTL
rs56023813chr7:155905671:C:T-0.2431894511027710.0162794127472555BLCAFemale-baised eQTL
rs2966504chr7:152797101:A:T-0.0853122184456690.0310298122507872LUADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs28539822chr7:146098902:C:T-0.08277979693115570.0375391685387494LGGMale-baised eQTL
rs2692380chr7:144925589:C:T--0.09005626957329590.0105839637575415KIRCMale-baised eQTL
rs173168chr7:146677431:A:G-0.1087268381544450.0288841656674702KIRCMale-baised eQTL
rs116135912chr7:146674514:A:T-0.1085121362739210.0295288332983519KIRCMale-baised eQTL
rs1353235chr7:146675932:T:C-0.1085121362739210.0295288332983519KIRCMale-baised eQTL
rs66533253chr7:146676484:C:T-0.1085121362739210.0295288332983519KIRCMale-baised eQTL
rs2699472chr7:144925399:T:A--0.07815686974137480.0342307656441365KIRCMale-baised eQTL
rs2699467chr7:144924602:T:C--0.07979508306254210.0358493070794381KIRCMale-baised eQTL
rs200671290chr7:159243971:T:G-0.08502901069815790.0360583547773389LUADMale-baised eQTL
rs883839chr7:145046312:A:C-0.06630252736544780.0169767969661514COADMale-baised eQTL
rs11981103chr7:141272843:C:T-0.05100136535469720.0259882947646189COADMale-baised eQTL
rs34908063chr7:145052378:C:T-0.06451244651248060.0286308839951279COADMale-baised eQTL
rs216994chr7:141260207:G:A--0.04959119320012740.0289359673564039COADMale-baised eQTL
rs891512chr7:151011001:A:G--0.05947554692931170.0293494773969265COADMale-baised eQTL
rs12539896chr7:141244886:C:T-0.04960807189360230.0402831032869007COADMale-baised eQTL
rs216996chr7:141270582:C:A--0.04776561497206220.0414083183107322COADMale-baised eQTL
rs10488316chr7:154399115:C:G--0.08442271571693720.0445336039641023COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription
eQTM boxplot analysisGene ID: ENSG00000002933
CpG Site: cg10409299
Position to Gene: gene,exon,promoter
Male Effect: -0.328274994051129
Female Effect: -
eQTM boxplot analysisGene ID: ENSG00000002933
CpG Site: cg10409299
Position to Gene: gene,exon,promoter
Male Effect: -
Female Effect: -0.451537921347272
eQTM boxplot analysisGene ID: ENSG00000002933
CpG Site: cg05726600
Position to Gene: gene,promoter
Male Effect: -0.262855728683552
Female Effect: -

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg10409299chr7:150801755gene,exon,promoter-0.3282749940511291.09281057206577e-10-0.65553065861177582.3966068786781775e-13PAAD
cg05726600chr7:150801506gene,promoter-0.2628557286835521.21890720289222e-15-0.473470430721971151.4908524883825923e-17LGG

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type
cg10409299chr7:150801755gene,exon,promoter-0.4515379213472724.90121926994426e-14-0.50413575017893717.633855723943979e-18LUAD

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of TMEM176A

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource