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	Gene summary
	Spatial pattern genes
	Spatial pattern pathway
	Cell cell interactions using single cell data
	Cell-cell/spot-spot interactions using spatial data
	Transcription factors events
	Related drugs with this gene
	Related diseases with this gene

Spatial pattern gene: Snrpf (spascer ID:69878)

Gene summary for Snrpf

Gene summary

Gene information
	Species	Mouse
	Gene symbol	Snrpf
	Gene ID	69878
	Gene name	small nuclear ribonucleoprotein polypeptide F
	Synonyms	2010013O18Rik\|SMF\|sm-F\|snRNP-F
	Cytomap	10\|10 C2
	Type of gene	protein-coding
	Description	small nuclear ribonucleoprotein Fsm protein F
	Modification date	20220424
	UniProtAcc	P62307

Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).

Gene	GO ID	GO term	PubMed ID	Category
Snrpf	GO:0000398	mRNA splicing, via spliceosome	21873635	Process
Snrpf	GO:0003723	RNA binding	21873635	Function
Snrpf	GO:0005685	U1 snRNP	21873635	Component
Snrpf	GO:0071013	catalytic step 2 spliceosome	21873635	Component

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Spatial pattern events for Snrpf

spatial pattern gene list.

Gene symbol	Species	Tissue	Replication	PMID	Adj p-value
Snrpf	Mouse	Brain	S2	34413515	1.56e-15
Snrpf	Mouse	Brain	S3	34413515	4.64e-08
Snrpf	Mouse	Brain	S4	34413515	4.65e-15
Snrpf	Mouse	Brain	S6	34413515	1.68e-10
Snrpf	Mouse	Brain	S7	34413515	1.23e-06
Snrpf	Mouse	Brain	rep_1	35141374	5.15e-07
Snrpf	Mouse	Brain	rep_3	35141374	1.64e-15
Snrpf	Mouse	Brain	rep_4	35141374	7.66e-09
Snrpf	Mouse	Brain	rep_5	35141374	2.02e-14
Snrpf	Mouse	Brain	rep_6	35141374	2.69e-08
Snrpf	Mouse	Embryo	rep_5	33188776	2.76e-06
Snrpf	Mouse	Kidney	CLP	34003797	2.19e-15
Snrpf	Mouse	Kidney	IRI	34003797	2.29e-15
Snrpf	Mouse	Kidney	Sham	34003797	2.58e-15
Snrpf	Mouse	Kidney	rep_1	34853151	2.42e-15
Snrpf	Mouse	Kidney	rep_3	34853151	1.80e-09
Snrpf	Mouse	Kidney	rep_5	34853151	3.18e-15
Snrpf	Mouse	Brain	rep_1	33469025	1.30e-15
Snrpf	Mouse	Brain	rep_1	35027729	8.67e-07
Snrpf	Mouse	Brain	rep_3	35027729	7.71e-10
Snrpf	Mouse	Brain	rep_4	35027729	1.89e-06
Snrpf	Mouse	Brain	rep_5	35027729	5.00e-15
Snrpf	Mouse	Intestine	rep_3	35149721	2.13e-07
Snrpf	Mouse	Intestine	rep_4	35149721	2.30e-15
Snrpf	Mouse	Lymph	A1	0	3.29e-15
Snrpf	Mouse	Lymph	B1	0	3.66e-15
Snrpf	Mouse	Lung	rep_1	35290801	6.56e-15
Snrpf	Mouse	Lung	rep_2	35290801	8.75e-15
Snrpf	Mouse	Lung	rep_3	35290801	3.00e-12
Snrpf	Mouse	Lung	rep_4	35290801	3.18e-06

spatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)	Singel gene map
Brain_rep_1_H&E
Brain_rep_3_H&E
Brain_rep_4_H&E
Brain_rep_5_H&E
Brain_rep_6_H&E
Kidney_CLP_H&E
Kidney_IRI_H&E
Kidney_Sham_H&E
Kidney_rep_1_H&E
Kidney_rep_3_H&E
Kidney_rep_5_H&E
Brain_rep_1_H&E
Brain_rep_1_H&E
Brain_rep_3_H&E
Brain_rep_4_H&E
Brain_rep_5_H&E
Lung_rep_1_H&E
Lung_rep_2_H&E
Lung_rep_3_H&E
Lung_rep_4_H&E

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Spatial pattern pathway has Snrpf envolved

Symbol	Pathway	Species	Tissue type	Replication	P-value
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Spinal cord	CN94_E1	5.9e-06
Snrpf	GOBP_Mrna_Processing	Mouse	Spinal cord	L7bCN02_E1	5.5e-06
Snrpf	GOBP_Dna_Templated_Transcription_Termination	Mouse	Spinal cord	L7CN45_C1	1.4e-07
Snrpf	GOBP_Intracellular_Transport	Mouse	Spinal cord	L7CN45_C1	4.4e-06
Snrpf	GOBP_Nuclear_Transport	Mouse	Spinal cord	L7CN45_C1	6.5e-07
Snrpf	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Spinal cord	L7CN45_C1	1.4e-06
Snrpf	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Spinal cord	L7CN45_C1	1.2e-07
Snrpf	GOBP_Rna_Processing	Mouse	Spinal cord	L7CN45_C1	2.2e-09
Snrpf	GOBP_Rna_Splicing	Mouse	Spinal cord	L7CN45_C1	3.7e-08
Snrpf	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Spinal cord	L7CN45_C1	1.8e-09
Snrpf	GOBP_Spliceosomal_Snrnp_Assembly	Mouse	Spinal cord	L7CN45_C1	7.4e-06
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Spinal cord	L7CN45_C1	4.9e-06
Snrpf	GOBP_Import_Into_Nucleus	Mouse	Spinal cord	L7CN47_C1	2.0e-06
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Brain	rep_41	3.3e-07
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Brain	rep_41	2.5e-06
Snrpf	GOBP_Dna_Templated_Transcription_Termination	Mouse	Brain	rep_1	5.4e-10
Snrpf	GOBP_Import_Into_Nucleus	Mouse	Brain	rep_1	8.0e-08
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Brain	rep_1	2.0e-55
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Brain	rep_3	1.3e-206
Snrpf	GOBP_Intracellular_Transport	Mouse	Brain	rep_3	1.0e-102
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Brain	rep_3	3.9e-221
Snrpf	GOBP_Mrna_Processing	Mouse	Brain	rep_3	4.7e-219
Snrpf	GOBP_Nuclear_Transport	Mouse	Brain	rep_3	1.4e-181
Snrpf	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Brain	rep_3	5.6e-32
Snrpf	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Brain	rep_3	6.1e-80
Snrpf	GOBP_Rna_Processing	Mouse	Brain	rep_3	4.3e-140
Snrpf	GOBP_Rna_Splicing	Mouse	Brain	rep_3	2.2e-224
Snrpf	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Brain	rep_3	1.8e-234
Snrpf	GOBP_Spliceosomal_Snrnp_Assembly	Mouse	Brain	rep_3	5.8e-214
Snrpf	GOBP_Dna_Templated_Transcription_Termination	Mouse	Embryo	rep_14	1.5e-52
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Embryo	rep_14	1.0e-19
Snrpf	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Embryo	rep_14	2.1e-33
Snrpf	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Embryo	rep_14	6.2e-25
Snrpf	GOBP_Rna_Processing	Mouse	Embryo	rep_14	3.5e-14
Snrpf	GOBP_Spliceosomal_Snrnp_Assembly	Mouse	Embryo	rep_14	5.8e-36
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Embryo	rep_14	2.3e-60
Snrpf	GOBP_Import_Into_Nucleus	Mouse	Embryo	rep_1	1.6e-15
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Embryo	rep_1	5.8e-21
Snrpf	GOBP_Nuclear_Transport	Mouse	Embryo	rep_1	5.4e-112
Snrpf	GOBP_Rna_Processing	Mouse	Embryo	rep_2	2.4e-14
Snrpf	GOBP_Dna_Templated_Transcription_Termination	Mouse	Kidney	rep_2	4.1e-111
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Kidney	rep_2	6.9e-16
Snrpf	GOBP_Intracellular_Transport	Mouse	Kidney	rep_2	7.9e-80
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Kidney	rep_2	3.1e-08
Snrpf	GOBP_Mrna_Processing	Mouse	Kidney	rep_2	5.0e-53
Snrpf	GOBP_Nuclear_Transport	Mouse	Kidney	rep_2	4.2e-27
Snrpf	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Kidney	rep_2	1.3e-69
Snrpf	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Kidney	rep_2	3.3e-25
Snrpf	GOBP_Rna_Processing	Mouse	Kidney	rep_2	1.1e-71
Snrpf	GOBP_Rna_Splicing	Mouse	Kidney	rep_2	1.1e-33
Snrpf	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Kidney	rep_2	8.8e-36
Snrpf	GOBP_Spliceosomal_Snrnp_Assembly	Mouse	Kidney	rep_2	1.8e-129
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Kidney	rep_2	2.2e-53
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Liver	CN16-D2	5.2e-07
Snrpf	GOBP_Mrna_Processing	Mouse	Liver	CN16-D2	4.8e-09
Snrpf	GOBP_Rna_Splicing	Mouse	Liver	CN16-D2	2.4e-07
Snrpf	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Liver	CN16-D2	2.0e-09
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Liver	CN73-C1	9.6e-08
Snrpf	GOBP_Dna_Templated_Transcription_Termination	Mouse	Liver	rep_15	3.9e-07
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Liver	rep_15	9.1e-15
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Brain	rep_1	3.7e-15
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Lymph	MS-1	2.6e-10
Snrpf	GOBP_Import_Into_Nucleus	Mouse	Lymph	MS-1	9.5e-15
Snrpf	GOBP_Intracellular_Transport	Mouse	Lymph	MS-1	3.3e-11
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Lymph	MS-1	3.2e-11
Snrpf	GOBP_Nuclear_Transport	Mouse	Lymph	MS-1	1.5e-07
Snrpf	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Lymph	MS-1	1.7e-07
Snrpf	GOBP_Rna_Processing	Mouse	Lymph	MS-1	2.0e-09
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Brain	rep_7	3.3e-11
Snrpf	GOBP_Termination_Of_Rna_Polymerase_Ii_Transcription	Mouse	Brain	HP_ad_rep3	5.4e-18
Snrpf	GOBP_Dna_Templated_Transcription_Termination	Mouse	Brain	HP_ad_rep7	3.0e-07
Snrpf	GOBP_Histone_Mrna_Metabolic_Process	Mouse	Brain	HP_ad_rep7	2.5e-08
Snrpf	GOBP_Import_Into_Nucleus	Mouse	Brain	HP_ad_rep7	3.2e-07
Snrpf	GOBP_Intracellular_Transport	Mouse	Brain	HP_ad_rep7	3.1e-08
Snrpf	GOBP_Mrna_Metabolic_Process	Mouse	Brain	HP_ad_rep7	2.2e-09
Snrpf	GOBP_Mrna_Processing	Mouse	Brain	HP_ad_rep7	2.3e-09
Snrpf	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Brain	HP_ad_rep7	7.9e-07
Snrpf	GOBP_Ribonucleoprotein_Complex_Subunit_Organization	Mouse	Brain	HP_ad_rep7	8.3e-08
Snrpf	GOBP_Rna_Processing	Mouse	Brain	HP_ad_rep7	2.7e-09
Snrpf	GOBP_Rna_Splicing	Mouse	Brain	HP_ad_rep7	5.3e-10
Snrpf	GOBP_Rna_Splicing_Via_Transesterification_Reactions	Mouse	Brain	HP_ad_rep7	2.3e-11
Snrpf	GOBP_Nuclear_Transport	Mouse	Brain	HP_polb_rep9	1.4e-07
Snrpf	GOBP_Spliceosomal_Snrnp_Assembly	Mouse	Brain	HP_polb_rep9	1.2e-12

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Snrpf function as liang/receptor in single cell data

Tissue

Source

SourceCell

Target

TargetCell

PMID

Group

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Snrpf function as liang/receptor across spatial transcriptomics tissue

Interactions using deconvoluted spatial data.

Ligand

Receptor

LR pair

Tissue

Replication

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Transcription factor for Snrpf envolved

Transcription factor analysis using single cell data.

Tissue

Group

Cell types

Target genes

Rss score

Motif information.

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Related Drugs for Snrpf

Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for Snrpf

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

Pubmeds

Source