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Spatial pattern gene: Ccdc28b (spascer ID:66264) |
Gene summary for Ccdc28b |
 Gene summary |
| Gene information | |
| Species | Mouse | Gene symbol | Ccdc28b | Gene ID | 66264 |
| Gene name | coiled coil domain containing 28B |
| Synonyms | 1110002E08Rik|1810010N17Rik |
| Cytomap | 4|4 D2.2 |
| Type of gene | protein-coding |
| Description | coiled-coil domain-containing protein 28B |
| Modification date | 20220424 |
| UniProtAcc | Q8CEG5 |
| Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA). |
| Gene | GO ID | GO term | PubMed ID | Category |
| Ccdc28b | GO:0005813 | centrosome | 21873635 | Component |
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Spatial pattern events for Ccdc28b |
| spatial pattern gene list. |
| Gene symbol | Species | Tissue | Replication | PMID | Adj p-value |
| Ccdc28b | Mouse | Brain | S2 | 34413515 | 1.56e-15 |
| Ccdc28b | Mouse | Brain | S3 | 34413515 | 3.83e-13 |
| Ccdc28b | Mouse | Brain | S4 | 34413515 | 1.37e-15 |
| Ccdc28b | Mouse | Brain | S6 | 34413515 | 1.46e-15 |
| Ccdc28b | Mouse | Brain | S7 | 34413515 | 1.55e-15 |
| Ccdc28b | Mouse | Kidney | rep_3 | 34853151 | 8.90e-09 |
| Ccdc28b | Mouse | Brain | rep_1 | 33469025 | 2.88e-14 |
| Ccdc28b | Mouse | Brain | rep_1 | 35027729 | 1.78e-09 |
| Ccdc28b | Mouse | Brain | rep_2 | 35027729 | 1.57e-15 |
| Ccdc28b | Mouse | Brain | rep_3 | 35027729 | 2.24e-11 |
| Ccdc28b | Mouse | Brain | rep_5 | 35027729 | 1.03e-11 |
| Ccdc28b | Mouse | Brain | rep_1 | 35210624 | 1.74e-15 |
| Ccdc28b | Mouse | Brain | rep_2 | 35210624 | 3.17e-15 |
| Ccdc28b | Mouse | Brain | rep_3 | 35210624 | 3.27e-15 |
| spatial pattern gene map.(click to enlarge the image in a new window) |
| H&E staining (if available) | Singel gene map |
Kidney_rep_3_H&E  |  |
Brain_rep_1_H&E  | |
Brain_rep_1_H&E  |  |
Brain_rep_2_H&E  |  |
Brain_rep_3_H&E  |  |
Brain_rep_5_H&E  |  |
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Spatial pattern pathway has Ccdc28b envolved |
| Symbol | Pathway | Species | Tissue type | Replication | P-value |
| Ccdc28b | GOBP_Cell_Projection_Assembly | Mouse | Spinal cord | CN94_E1 | 3.2e-06 |
| Ccdc28b | GOBP_Organelle_Assembly | Mouse | Spinal cord | CN94_E1 | 9.5e-06 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Spinal cord | L7CN45_C1 | 1.2e-07 |
| Ccdc28b | GOBP_Cilium_Organization | Mouse | Spinal cord | L7CN45_C1 | 5.6e-09 |
| Ccdc28b | GOBP_Cilium_Organization | Mouse | Brain | rep_27 | 3.1e-06 |
| Ccdc28b | GOBP_Cell_Projection_Assembly | Mouse | Brain | rep_1 | 8.3e-09 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Brain | rep_1 | 2.6e-08 |
| Ccdc28b | GOBP_Cilium_Organization | Mouse | Brain | rep_3 | 3.3e-172 |
| Ccdc28b | GOBP_Organelle_Assembly | Mouse | Brain | rep_3 | 2.0e-160 |
| Ccdc28b | GOBP_Cilium_Organization | Mouse | Embryo | rep_1 | 1.8e-293 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Embryo | rep_3 | 1.7e-72 |
| Ccdc28b | GOBP_Organelle_Assembly | Mouse | Embryo | rep_6 | 4.1e-70 |
| Ccdc28b | GOBP_Cell_Projection_Assembly | Mouse | Kidney | rep_2 | 3.6e-69 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Kidney | rep_2 | 4.1e-48 |
| Ccdc28b | GOBP_Cilium_Organization | Mouse | Kidney | rep_2 | 3.5e-79 |
| Ccdc28b | GOBP_Organelle_Assembly | Mouse | Kidney | rep_2 | 2.8e-62 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Liver | rep_16 | 3.4e-07 |
| Ccdc28b | GOBP_Cell_Projection_Assembly | Mouse | Lymph | MS-1 | 1.4e-09 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Lymph | MS-1 | 1.5e-09 |
| Ccdc28b | GOBP_Organelle_Assembly | Mouse | Lymph | MS-1 | 5.5e-08 |
| Ccdc28b | GOBP_Cell_Projection_Assembly | Mouse | Brain | HP_ad_rep7 | 1.0e-07 |
| Ccdc28b | GOBP_Cell_Projection_Organization | Mouse | Brain | HP_ad_rep7 | 8.1e-09 |
| Ccdc28b | GOBP_Cilium_Organization | Mouse | Brain | HP_ad_rep7 | 3.0e-08 |
| Ccdc28b | GOBP_Organelle_Assembly | Mouse | Brain | HP_adpolb_rep1 | 1.8e-07 |
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Ccdc28b function as liang/receptor in single cell data |
| Tissue | Source | SourceCell | Target | TargetCell | PMID | Group |
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Ccdc28b function as liang/receptor across spatial transcriptomics tissue |
| Interactions using deconvoluted spatial data. |
| Ligand | Receptor | LR pair | Tissue | Replication |
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Transcription factor for Ccdc28b envolved |
| Transcription factor analysis using single cell data. |
| TF | Tissue | Group | Cell types | Target genes | Rss score |
| Motif information. |
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Related Drugs for Ccdc28b |
| Approved drugs targeting this gene. (DrugBank Version 5.1.9 2022-01-04) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for Ccdc28b |
| Diseases associated with this gene. (DisGeNet 7.0) |
| Gene | Disease ID | Disease name | Pubmeds | Source |
| Ccdc28b | C2936862 | Bardet-Biedl syndrome 1 (disorder) | 1 | CTD_human;GENOMICS_ENGLAND |
| Ccdc28b | C4277690 | Ciliopathies | 1 | GENOMICS_ENGLAND |
