Home

Download & Upload

Statistics

Landscape

Help

Contact

	Gene summary
	Spatial pattern genes
	Spatial pattern pathway
	Cell cell interactions using single cell data
	Cell-cell/spot-spot interactions using spatial data
	Transcription factors events
	Related drugs with this gene
	Related diseases with this gene

Spatial pattern gene: Rcl1 (spascer ID:59028)

Gene summary for Rcl1

Gene summary

Gene information
	Species	Mouse
	Gene symbol	Rcl1
	Gene ID	59028
	Gene name	RNA terminal phosphate cyclase-like 1
	Synonyms	2310040A02Rik\|AI789745\|C76567\|RPCL1\|Rnac
	Cytomap	19\|19 C1
	Type of gene	protein-coding
	Description	RNA 3'-terminal phosphate cyclase-like proteinRNA cyclase homolog
	Modification date	20220424
	UniProtAcc	Q9JJT0

Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).

Gene	GO ID	GO term	PubMed ID	Category
Rcl1	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635	Process
Rcl1	GO:0004521	endoribonuclease activity	21873635	Function
Rcl1	GO:0005730	nucleolus	21873635	Component

Top

Spatial pattern events for Rcl1

spatial pattern gene list.

Gene symbol	Species	Tissue	Replication	PMID	Adj p-value
Rcl1	Mouse	Kidney	IRI	34003797	6.69e-10
Rcl1	Mouse	Kidney	Sham	34003797	6.15e-08
Rcl1	Mouse	Brain	rep_1	33469025	1.30e-15
Rcl1	Mouse	Liver	rep_22	35021063	8.52e-07
Rcl1	Mouse	Testicle	rep_1	34731600	2.55e-15
Rcl1	Mouse	Lymph	A1	0	3.29e-15
Rcl1	Mouse	Lymph	B1	0	6.10e-10

spatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)	Singel gene map
Kidney_IRI_H&E
Kidney_Sham_H&E
Brain_rep_1_H&E
Liver_rep_22_H&E

Top

Spatial pattern pathway has Rcl1 envolved

Symbol	Pathway	Species	Tissue type	Replication	P-value
Rcl1	GOBP_Nucleic_Acid_Phosphodiester_Bond_Hydrolysis	Mouse	Spinal cord	CN94_E1	5.8e-06
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Spinal cord	L7bCN01_D2	4.9e-06
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Spinal cord	L7bCN02_E1	2.3e-06
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Spinal cord	L7bCN02_E1	5.4e-06
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Spinal cord	L7CN45_C1	1.4e-08
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Spinal cord	L7CN45_C1	5.8e-09
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Spinal cord	L7CN45_C1	1.8e-07
Rcl1	GOBP_Ncrna_Metabolic_Process	Mouse	Spinal cord	L7CN45_C1	1.5e-07
Rcl1	GOBP_Ncrna_Processing	Mouse	Spinal cord	L7CN45_C1	1.4e-06
Rcl1	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Spinal cord	L7CN45_C1	1.4e-06
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Spinal cord	L7CN45_C1	1.6e-06
Rcl1	GOBP_Ribosome_Biogenesis	Mouse	Spinal cord	L7CN45_C1	1.4e-06
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Spinal cord	L7CN45_C1	4.9e-07
Rcl1	GOBP_Rna_Processing	Mouse	Spinal cord	L7CN45_C1	2.2e-09
Rcl1	GOBP_Rrna_Metabolic_Process	Mouse	Spinal cord	L7CN45_C1	6.3e-07
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Spinal cord	L7CN47_D1	1.7e-07
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_11	7.2e-05
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Brain	rep_27	4.2e-07
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_27	8.2e-06
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Brain	rep_27	8.1e-08
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Brain	rep_27	1.4e-08
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Brain	rep_72	6.9e-05
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Brain	rep_3	4.0e-25
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_3	8.2e-60
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Brain	rep_3	4.7e-18
Rcl1	GOBP_Ncrna_Metabolic_Process	Mouse	Brain	rep_3	1.8e-46
Rcl1	GOBP_Ncrna_Processing	Mouse	Brain	rep_3	5.1e-21
Rcl1	GOBP_Nucleic_Acid_Phosphodiester_Bond_Hydrolysis	Mouse	Brain	rep_3	1.9e-149
Rcl1	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Brain	rep_3	5.6e-32
Rcl1	GOBP_Ribosome_Biogenesis	Mouse	Brain	rep_3	1.8e-14
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Brain	rep_3	2.5e-155
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Brain	rep_3	9.2e-50
Rcl1	GOBP_Rna_Processing	Mouse	Brain	rep_3	4.3e-140
Rcl1	GOBP_Rrna_Metabolic_Process	Mouse	Brain	rep_3	1.7e-24
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_7	5.7e-117
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Brain	rep_7	1.4e-124
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_7	2.4e-148
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Brain	rep_7	1.5e-116
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_7	9.8e-115
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Brain	rep_7	3.5e-103
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Embryo	rep_6	1.7e-13
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Embryo	rep_6	9.0e-19
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Embryo	rep_6	6.9e-16
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Embryo	rep_14	3.2e-54
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Embryo	rep_14	1.1e-45
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Embryo	rep_14	4.0e-23
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Embryo	rep_14	1.5e-49
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Embryo	rep_14	8.5e-57
Rcl1	GOBP_Ncrna_Processing	Mouse	Embryo	rep_14	2.7e-41
Rcl1	GOBP_Nucleic_Acid_Phosphodiester_Bond_Hydrolysis	Mouse	Embryo	rep_14	3.6e-15
Rcl1	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Embryo	rep_14	2.1e-33
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Embryo	rep_14	6.3e-37
Rcl1	GOBP_Ribosome_Biogenesis	Mouse	Embryo	rep_14	2.1e-33
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Embryo	rep_14	1.1e-17
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Embryo	rep_14	6.0e-30
Rcl1	GOBP_Rna_Processing	Mouse	Embryo	rep_14	3.5e-14
Rcl1	GOBP_Rrna_Metabolic_Process	Mouse	Embryo	rep_14	2.2e-54
Rcl1	GOBP_Rna_Processing	Mouse	Embryo	rep_2	2.4e-14
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Kidney	rep_2	1.5e-90
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Kidney	rep_2	9.1e-28
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Kidney	rep_2	7.0e-98
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Kidney	rep_2	2.0e-104
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Kidney	rep_2	4.9e-67
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Kidney	rep_2	2.2e-95
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Kidney	rep_2	3.9e-67
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Kidney	rep_2	4.6e-60
Rcl1	GOBP_Ncrna_Metabolic_Process	Mouse	Kidney	rep_2	6.2e-81
Rcl1	GOBP_Ncrna_Processing	Mouse	Kidney	rep_2	5.7e-81
Rcl1	GOBP_Nucleic_Acid_Phosphodiester_Bond_Hydrolysis	Mouse	Kidney	rep_2	3.2e-102
Rcl1	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Kidney	rep_2	1.3e-69
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Kidney	rep_2	1.9e-65
Rcl1	GOBP_Ribosome_Biogenesis	Mouse	Kidney	rep_2	2.5e-90
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Kidney	rep_2	1.8e-86
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Kidney	rep_2	5.3e-45
Rcl1	GOBP_Rna_Processing	Mouse	Kidney	rep_2	1.1e-71
Rcl1	GOBP_Rrna_Metabolic_Process	Mouse	Kidney	rep_2	6.8e-87
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Liver	CN16-D2	2.4e-10
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Liver	CN16-D2	1.9e-07
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Liver	CN73-C1	4.8e-12
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Liver	CN73-C1	6.9e-07
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Liver	CN73-C1	5.7e-09
Rcl1	GOBP_Ncrna_Metabolic_Process	Mouse	Liver	CN73-C1	1.4e-08
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Liver	CN73-C1	5.1e-08
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Liver	rep_16	1.6e-10
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Liver	rep_16	2.0e-13
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Liver	rep_16	5.2e-10
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Liver	rep_16	6.6e-13
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	rep_1	1.9e-06
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Lymph	MS-1	2.8e-08
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Lymph	MS-1	2.3e-10
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Lymph	MS-1	1.6e-09
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Lymph	MS-1	2.5e-08
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Lymph	MS-1	2.6e-10
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Lymph	MS-1	2.8e-08
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Lymph	MS-1	8.6e-12
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Lymph	MS-1	8.6e-12
Rcl1	GOBP_Ncrna_Metabolic_Process	Mouse	Lymph	MS-1	1.4e-09
Rcl1	GOBP_Ncrna_Processing	Mouse	Lymph	MS-1	7.2e-09
Rcl1	GOBP_Nucleic_Acid_Phosphodiester_Bond_Hydrolysis	Mouse	Lymph	MS-1	1.4e-09
Rcl1	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Lymph	MS-1	1.7e-07
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Lymph	MS-1	9.9e-07
Rcl1	GOBP_Ribosome_Biogenesis	Mouse	Lymph	MS-1	8.8e-09
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Lymph	MS-1	9.3e-10
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Lymph	MS-1	8.3e-11
Rcl1	GOBP_Rna_Processing	Mouse	Lymph	MS-1	2.0e-09
Rcl1	GOBP_Rrna_Metabolic_Process	Mouse	Lymph	MS-1	7.1e-07
Rcl1	GOBP_Endonucleolytic_Cleavage_In_5_Ets_Of_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	HP_ad_rep3	1.2e-11
Rcl1	GOBP_Endonucleolytic_Cleavage_In_Its1_To_Separate_Ssu_Rrna_From_5_8s_Rrna_And_Lsu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	HP_ad_rep3	2.0e-07
Rcl1	GOBP_Endonucleolytic_Cleavage_Involved_In_Rrna_Processing	Mouse	Brain	HP_ad_rep3	2.8e-09
Rcl1	GOBP_Maturation_Of_5_8s_Rrna	Mouse	Brain	HP_ad_rep7	4.7e-08
Rcl1	GOBP_Maturation_Of_5_8s_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	HP_ad_rep7	9.5e-08
Rcl1	GOBP_Ncrna_Metabolic_Process	Mouse	Brain	HP_ad_rep7	5.9e-10
Rcl1	GOBP_Nucleic_Acid_Phosphodiester_Bond_Hydrolysis	Mouse	Brain	HP_ad_rep7	3.0e-09
Rcl1	GOBP_Ribonucleoprotein_Complex_Biogenesis	Mouse	Brain	HP_ad_rep7	7.9e-07
Rcl1	GOBP_Ribosome_Biogenesis	Mouse	Brain	HP_ad_rep7	1.6e-08
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis	Mouse	Brain	HP_ad_rep7	4.6e-12
Rcl1	GOBP_Rna_Phosphodiester_Bond_Hydrolysis_Endonucleolytic	Mouse	Brain	HP_ad_rep7	1.2e-09
Rcl1	GOBP_Rna_Processing	Mouse	Brain	HP_ad_rep7	2.7e-09
Rcl1	GOBP_Ribosomal_Small_Subunit_Biogenesis	Mouse	Brain	HP_ad_rep8	2.2e-07
Rcl1	GOBP_Cleavage_Involved_In_Rrna_Processing	Mouse	Brain	HP_adpolb_rep1	2.0e-14
Rcl1	GOBP_Ncrna_Processing	Mouse	Brain	HP_adpolb_rep1	3.5e-08
Rcl1	GOBP_Rrna_Metabolic_Process	Mouse	Brain	HP_adpolb_rep1	2.6e-13
Rcl1	GOBP_Maturation_Of_Ssu_Rrna	Mouse	Brain	HP_polb_rep9	3.6e-10
Rcl1	GOBP_Maturation_Of_Ssu_Rrna_From_Tricistronic_Rrna_Transcript_Ssu_Rrna_5_8s_Rrna_Lsu_Rrna	Mouse	Brain	HP_polb_rep9	6.8e-08

Top

Rcl1 function as liang/receptor in single cell data

Tissue

Source

SourceCell

Target

TargetCell

PMID

Group

Top

Rcl1 function as liang/receptor across spatial transcriptomics tissue

Interactions using deconvoluted spatial data.

Ligand

Receptor

LR pair

Tissue

Replication

Top

Transcription factor for Rcl1 envolved

Transcription factor analysis using single cell data.

Tissue

Group

Cell types

Target genes

Rss score

Motif information.

Top

Related Drugs for Rcl1

Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

Related Diseases for Rcl1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	Pubmeds	Source
Rcl1	C0152013	Adenocarcinoma of lung (disorder)	1	CTD_human